Tools & Software

Software
MinActionPath
Marc Delarue

Software
ProteoCombiner
Julia Chamot-Rooke • Diogo Borges-Lima

Software
instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder
Romain Koszul

Software
Chromosight: A computer vision program for pattern detection in chromosome contact maps
Romain Koszul

Software
Serpentine: a flexible 2D binning method for differential Hi-C analysis
Romain Koszul

Software
COVID-Align

Software
Imjoy – open access platform for deep learning methods
Christophe Zimmer

Tool
ARIAweb: a server for automated NMR structure calculation
Benjamin Bardiaux

Tool
Python-cwlgen
Hervé Menager

Tool
sequana_coverage standalone application
Thomas Cokelaer

Tool
Single Cell Proteomics
Milena Hasan • Mariette Matondo

Tool
Single Cell Phenotyping – Microscopy
Nathalie Aulner

Tool
Single Cell Phenotyping – Flow Cytometry
Sophie Novault

Tool
Single Cell Data Analysis
Milena Hasan • Marie-Agnès Dillies • Claudia Chica

Tool
Single Cell Transcriptomics
Valentina Libri • Marc Monot

Tool
crispr.pasteur.fr
David Bikard

Tool
GenEvo
Thomas Bourgeron

Tool
PLUMED-NEST
Max Bonomi

Tool
Live Mouse Tracker
Elodie Ey • Fabrice de Chaumont • Jean-Christophe Olivo-Marin • Thomas Bourgeron

Software
g-RITA
Natalia Pietrosemoli

Software
JolyTree
Alexis Criscuolo

Tool
RΕQ: assessing branch supports oƒ a distance-based phylogenetic tree with the rate oƒ elementary quartets
Alexis Criscuolo

Software
PLUMED
Max Bonomi

Software
DIVA microscopy
Jean-Baptiste Masson • Maxime Dahan† • Fabien Reyal • Mohamed El Beheiry

Software
BACNET : A Java platform to create “multi-omics” website.
Christophe Becavin

Tool
Sherpa
Natalia Pietrosemoli • Sébastien MELLA

Tool
coGSEA
Natalia Pietrosemoli

Tool
Bioconda
Etienne Kornobis • Thomas Cokelaer

Software
ZOLA-3D Zernike Optimized Localization approach
Christophe Zimmer

Tool