Timeline

Bernd Jagla

Research Engineer

26 Sep 2023

project

Deep Learning group

17 Jul 2023

course

Bioinformatics program for PhD students 2023 2024

01 Jan 2023

publication

Functional maturation of human iPSC-derived pyramidal neurons in vivo is dependent on proximity with the host tissue.

11 Jul 2022

course

Bioinformatics program for PhD students 2022-2023

30 Oct 2019

tool

Single Cell Transcriptomics, Epigenetic and Genomics (GEX, ATAC, ADT, Multiome)

26 Apr 2019

publication

Human pre-valvular endocardial cells derived from pluripotent stem cells recapitulate cardiac pathophysiological valvulogenesis

18 Mar 2019

event

Antigen Receptor Repertoires and Specificities at Single Cell Resolution

06 Sep 2018

news

Shiny application for single cell mRNAseq data analysis for biologists

21 May 2018

publication

Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation

16 Jan 2018

publication

Molecular signature of the imprintosome complex at the mating-type locus in fission yeast

12 Sep 2017

publication

Role of the IL-12/IL-35 balance in patients with Sjögren syndrome

07 Feb 2017

publication

Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite

24 Mar 2016

publication

Comparative analysis of viral RNA signatures on different RIG-I-like receptors

20 Oct 2015

publication

Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns

24 Sep 2015

tool

Clean-ngs

14 Sep 2015

project

HIV signature on RIG-I-like receptors

29 Jul 2015

team

UTechS Single Cell Biomarkers

26 Jun 2015

team

Bioinformatics and Biostatistics HUB

18 Mar 2015

team

Biomics

04 Feb 2015

project

Technological developments

10 Jan 2015

publication

Repressor activity of the RpoS/σS-dependent RNA polymerase requires DNA binding

08 May 2014

publication

Expanding the RpoS/σS-network by RNA sequencing and identification of σS-controlled small RNAs in Salmonella

31 Mar 2014

publication

A putative regulatory genetic locus modulates virulence in the pathogen Leptospira interrogans

22 May 2013

publication

Massive activation of archaeal defense genes during viral infection

01 Apr 2013

publication

Identification of RNA partners of viral proteins in infected cells

21 Nov 2012

publication

Dicer-2- and Piwi-mediated RNA interference in Rift Valley fever virus-infected mosquito cells

27 Aug 2011

publication

Extending KNIME for next-generation sequencing data analysis

23 Jul 2009

publication

Urinary NGAL marks cystic disease in HIV-associated nephropathy

01 Sep 2007

publication

beta-catenin/TCF/Lef controls a differentiation-associated transcriptional program in renal epithelial progenitors

01 Jan 2006

publication

Cell-based assays using primary endothelial cells to study multiple steps in inflammation

01 Jun 2005

publication

Sequence characteristics of functional siRNAs

01 Mar 2000

publication

A little guide for advanced search:

Timeline

Deep Learning group

Bioinformatics program for PhD students 2023 2024

Functional maturation of human iPSC-derived pyramidal neurons in vivo is dependent on proximity with the host tissue.

Bioinformatics program for PhD students 2022-2023

Single Cell Transcriptomics, Epigenetic and Genomics (GEX, ATAC, ADT, Multiome)

Human pre-valvular endocardial cells derived from pluripotent stem cells recapitulate cardiac pathophysiological valvulogenesis

Antigen Receptor Repertoires and Specificities at Single Cell Resolution

Shiny application for single cell mRNAseq data analysis for biologists

Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation

Molecular signature of the imprintosome complex at the mating-type locus in fission yeast

Role of the IL-12/IL-35 balance in patients with Sjögren syndrome

Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite

Comparative analysis of viral RNA signatures on different RIG-I-like receptors

Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns

Clean-ngs

HIV signature on RIG-I-like receptors

UTechS Single Cell Biomarkers

Bioinformatics and Biostatistics HUB

Biomics

Technological developments

Repressor activity of the RpoS/σS-dependent RNA polymerase requires DNA binding

Expanding the RpoS/σS-network by RNA sequencing and identification of σS-controlled small RNAs in Salmonella

A putative regulatory genetic locus modulates virulence in the pathogen Leptospira interrogans

Massive activation of archaeal defense genes during viral infection

Identification of RNA partners of viral proteins in infected cells

Dicer-2- and Piwi-mediated RNA interference in Rift Valley fever virus-infected mosquito cells

Extending KNIME for next-generation sequencing data analysis

Urinary NGAL marks cystic disease in HIV-associated nephropathy

beta-catenin/TCF/Lef controls a differentiation-associated transcriptional program in renal epithelial progenitors

Cell-based assays using primary endothelial cells to study multiple steps in inflammation

Sequence characteristics of functional siRNAs

Adaptive encoding neural networks for the recognition of human signal peptide cleavage sites