Timeline
Thomas Cokelaer
Research Engineer
24 Jun 2019
24 Oct 2018
publication
A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection.
Read more27 Sep 2018
06 Sep 2018
publication
Sequana Coverage: Detection and Characterization of Genomic Variations using Running Median and Mixture Models
Read more20 Aug 2018
publication
High Acquisition Rate of ESBL-Producing Enterobacteriaceae among French Military Personnel on Mission Abroad, without Evidence of Inter-Individual Transmission.
Read more19 Jul 2018
19 Jul 2018
02 Jul 2018
publication
Bioconda: sustainable and comprehensive software distribution for the life sciences
Read more26 Jun 2018
19 Jan 2018
24 Nov 2017
27 Oct 2017
31 Mar 2017
publication
Drug resistance mechanisms in colorectal cancer dissected with cell type-specific dynamic logic models
Read more22 Nov 2016
12 Aug 2016
publication
Efficient randomization of biological networks while preserving functional characterization of individual nodes
Read more06 Jul 2016
24 Jun 2016
software
BioServices: a common Python package to access biological Web Services programmatically
Read more23 Jun 2016
23 Jun 2016
22 Feb 2016
publication
Inferring causal molecular networks: empirical assessment through a community-based effort
Read more09 Oct 2015
18 Mar 2015
25 Jan 2015
publication
Cooperative development of logical modelling standards and tools with CoLoMoTo
Read more09 Dec 2014
publication
Phosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeast
Read more01 Jun 2014
publication
A community effort to assess and improve drug sensitivity prediction algorithms
Read more10 May 2014
publication
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics
Read more07 Feb 2014
publication
Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach
Read more10 Dec 2013
publication
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
Read more23 Sep 2013
publication
BioServices: a common Python package to access biological Web Services programmatically
Read more12 Jul 2013
publication
Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming
Read more27 Jan 2013
18 Oct 2012
publication
CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms
Read more30 May 2012
publication
L-py: an L-system simulation framework for modeling plant architecture development based on a dynamic language
Read more20 Aug 2009
publication
An upper limit on the stochastic gravitational-wave background of cosmological origin
Read more20 Mar 2009
publication
All-sky LIGO search for periodic gravitational waves in the early fifth-science-run data
Read more21 Nov 2008
22 Nov 2005
12 May 2005