• 2025
  Bignaud A, Conti DE, Thierry A, Serizay J, Labadie K, Poulain J, Cheny O, Colón-González M, Debarbieux L, Guerrero-Osornio M, Helaine S, Hill P, Le Tinier G, Millot GA, Morales L, Parada A, Riera N, Iraola G, Koszul R, Marbouty M, Phages with a broad host range are common across ecosystems., Nat Microbiol 2025 Oct; 10(10): 2537-2549.
• 2025
  Mazzuoli MV, van Raaphorst R, Martin LS, Bock FP, Thierry A, Marbouty M, Waclawiková B, Stinenbosch J, Koszul R, Veening JW, HU promotes higher order chromosome organization and influences DNA replication rates in Streptococcus pneumoniae., Nucleic Acids Res 2025 Apr; 53(8): .
• 2024
  Forest T, Achaz G, Marbouty M, Bignaud A, Thierry A, Koszul R, Milhes M, Lledo J, Pons JM, Fuchs J, Chromosome-level genome assembly of the European green woodpecker Picus viridis., G3 (Bethesda) 2024 Mar; (): .
• 2024
  Barcia-Cruz R, Goudenège D, Moura de Sousa JA, Piel D, Marbouty M, Rocha EPC, Le Roux F, Phage-inducible chromosomal minimalist islands (PICMIs), a novel family of small marine satellites of virulent phages., Nat Commun 2024 Jan; 15(1): 664.
• 2024
  Bignaud A, Cockram C, Borde C, Groseille J, Allemand E, Thierry A, Marbouty M, Mozziconacci J, Espéli O, Koszul R, Transcription-induced domains form the elementary constraining building blocks of bacterial chromosomes., Nat Struct Mol Biol 2024 Jan; (): .
• 2023
  Lamy-Besnier Q, Bignaud A, Garneau JR, Titecat M, Conti DE, Von Strempel A, Monot M, Stecher B, Koszul R, Debarbieux L, Marbouty M, Chromosome folding and prophage activation reveal specific genomic architecture for intestinal bacteria., Microbiome 2023 May; 11(1): 111.
• 2022
  Boutet I, Alves Monteiro HJ, Baudry L, Takeuchi T, Bonnivard E, Billoud B, Farhat S, Gonzales-Araya R, Salaun B, Andersen AC, Toullec JY, Lallier FH, Flot JF, Guiglielmoni N, Guo X, Li C, Allam B, Pales-Espinosa E, Hemmer-Hansen J, Moreau P, Marbouty M, Koszul R, Tanguy A, Chromosomal assembly of the flat oyster (Ostrea edulis L.) genome as a new genetic resource for aquaculture., Evol Appl 2022 Nov; 15(11): 1730-1748.
• 2022
  Kumar S, Schmitt C, Gorgette O, Marbouty M, Duchateau M, Giai Gianetto Q, Matondo M, Guigner JM, De Reuse H, , Bacterial Membrane Vesicles as a Novel Strategy for Extrusion of Antimicrobial Bismuth Drug in Helicobacter pylori., mBio 2022 Oct; 13(5): e0163322.
• 2021
  Simion P, Narayan J, Houtain A, Derzelle A, Baudry L, Nicolas E, Arora R, Cariou M, Cruaud C, Gaudray FR, Gilbert C, Guiglielmoni N, Hespeels B, Kozlowski DKL, Labadie K, Limasset A, Llirós M, Marbouty M, Terwagne M, Virgo J, Cordaux R, Danchin EGJ, Hallet B, Koszul R, Lenormand T, Flot JF, Van Doninck K, , Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga., Sci Adv 2021 Oct; 7(41): eabg4216.
• 2021
  Julian R. Garneau, Véronique Legrand, Martial Marbouty, Maximilian O. Press, Dean R. Vik, Louis-Charles Fortier, Matthew B. Sullivan, David Bikard , Marc Monot, High‑throughput identification of viral termini and packaging mechanisms in virome datasets using PhageTermVirome, Sci Rep 11, 18319 (2021)..
• 2021
  Gauthier J, Boulain H, van Vugt JJFA, Baudry L, Persyn E, Aury JM, Noel B, Bretaudeau A, Legeai F, Warris S, Chebbi MA, Dubreuil G, Duvic B, Kremer N, Gayral P, Musset K, Josse T, Bigot D, Bressac C, Moreau S, Periquet G, Harry M, Montagné N, Boulogne I, Sabeti-Azad M, Maïbèche M, Chertemps T, Hilliou F, Siaussat D, Amselem J, Luyten I, Capdevielle-Dulac C, Labadie K, Merlin BL, Barbe V, de Boer JG, Marbouty M, Cônsoli FL, Dupas S, Hua-Van A, Le Goff G, Bézier A, Jacquin-Joly E, Whitfield JB, Vet LEM, Smid HM, Kaiser L, Koszul R, Huguet E, Herniou EA, Drezen JM, , Author Correction: Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization., Commun Biol 2021 Jul; 4(1): 940.
• 2021
  Lamy-Besnier Q, Koszul R, Debarbieux L, Marbouty M, , Closed and High-Quality Bacterial Genome Sequences of the Oligo-Mouse-Microbiota Community., Microbiol Resour Announc 2021 Apr; 10(17): .
• 2021
  Marbouty M, Thierry A, Millot GA, Koszul R, , MetaHiC phage-bacteria infection network reveals active cycling phages of the healthy human gut., Elife 2021 Feb; 10(): .
• 2021
  Gauthier J, Boulain H, van Vugt JJFA, Baudry L, Persyn E, Aury JM, Noel B, Bretaudeau A, Legeai F, Warris S, Chebbi MA, Dubreuil G, Duvic B, Kremer N, Gayral P, Musset K, Josse T, Bigot D, Bressac C, Moreau S, Periquet G, Harry M, Montagné N, Boulogne I, Sabeti-Azad M, Maïbèche M, Chertemps T, Hilliou F, Siaussat D, Amselem J, Luyten I, Capdevielle-Dulac C, Labadie K, Merlin BL, Barbe V, de Boer JG, Marbouty M, Cônsoli FL, Dupas S, Hua-Van A, Le Goff G, Bézier A, Jacquin-Joly E, Whitfield JB, Vet LEM, Smid HM, Kaiser L, Koszul R, Huguet E, Herniou EA, Drezen JM, , Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization., Commun Biol 2021 Jan; 4(1): 104.
• 2020
  Baudry L, Guiglielmoni N, Marie-Nelly H, Cormier A, Marbouty M, Avia K, Mie YL, Godfroy O, Sterck L, Cock JM, Zimmer C, Coelho SM, Koszul R, , instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder., Genome Biol 2020 06; 21(1): 148.
• 2020
  Böhm K, Giacomelli G, Schmidt A, Imhof A, Koszul R, Marbouty M, Bramkamp M, , Chromosome organization by a conserved condensin-ParB system in the actinobacterium Corynebacterium glutamicum., Nat Commun 2020 Mar; 11(1): 1485.
• 2018
  Moreau P, Cournac A, Palumbo GA, Marbouty M, Mortaza S, Thierry A, Cairo S, Lavigne M, Koszul R, Neuveut C, , Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin., Nat Commun 2018 Oct; 9(1): 4268.
• 2018
  Lioy VS*, Cournac A*, Marbouty M, Duigou S, Mozziconacci J, Espéli O, Boccard F, Koszul R, Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins, Cell 2018 Jan;.
• 2017
  Jourdier E, Baudry L, Poggi-Parodi D, Vicq Y, Koszul R, Margeot A, Marbouty M, Bidard F, Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes, Biotechnol Biofuels 2017;10:151.
• 2017
  Marbouty M, Baudry L, Cournac A, Koszul R, Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay, Sci Adv 2017 Feb;3(2):e1602105.
• 2017
  Marbouty M, Koszul R, Generation and Analysis of Chromosomal Contact Maps of Bacteria, Methods Mol. Biol. 2017;1624:75-84.
• 2016
  Val ME, Marbouty M, de Lemos Martins F, Kennedy SP, Kemble H, Bland MJ, Possoz C, Koszul R, Skovgaard O, Mazel D, A checkpoint control orchestrates the replication of the two chromosomes of Vibrio cholerae., Sci Adv 2016 Apr; 2(4): e1501914.
• 2016
  Maya Spichal, Alice Brion, Sébastien Herbert, Axel Cournac, Martial Marbouty, Christophe Zimmer, Romain Koszul, Emmanuelle Fabre, Evidence for actin dual role in regulating chromosome organization and dynamics in yeast, J Cell Sci 2016 : doi: 10.1242/jcs.175745.
• 2016
  Cournac A, Marbouty M, Mozziconacci J, Koszul R, Generation and Analysis of Chromosomal Contact Maps of Yeast Species, Methods Mol Biol. 2016;1361:227-45.
• 2015
  Marbouty M, Koszul R, Metagenome Analysis Exploiting High-Throughput Chromosome Conformation Capture (3C) Data, Trends Genet. 2015 Nov;.
• 2015
  Guidi M, Ruault M, Marbouty M, Loïodice I, Cournac A, Billaudeau C, Hocher A, Mozziconacci J, Koszul R, Taddei A, , Spatial reorganization of telomeres in long-lived quiescent cells., Genome Biol 2015 Sep; 16(1): 206.
• 2015
  Descorps-Declère S, Saguez C, Cournac A, Marbouty M, Rolland T, Ma L, Bouchier C, Moszer I, Dujon B, Koszul R, Richard GF, Genome-wide replication landscape of Candida glabrata, BMC Biol. 2015 Sep;13:69.
• 2015
  Marbouty M, Le Gall A, Cattoni DI, Cournac A, Koh A, Fiche JB, Mozziconacci J, Murray H, Koszul R, Nollmann M, Condensin- and Replication-Mediated Bacterial Chromosome Folding and Origin Condensation Revealed by Hi-C and Super-resolution Imaging, Mol. Cell 2015 Aug;59(4):588-602.
• 2014
  Marie-Nelly H, Marbouty M, Cournac A, Flot JF, Liti G, Parodi DP, Syan S, Guillén N, Margeot A, Zimmer C, Koszul R, , High-quality genome (re)assembly using chromosomal contact data., Nat Commun 2014 Dec; 5(): 5695.
• 2014
  Marbouty M, Cournac A, Flot JF, Marie-Nelly H, Mozziconacci J, Koszul R, Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms, Elife 2014;3:e03318.
• 2014
  Marie-Nelly H, Marbouty M, Cournac A, Liti G, Fischer G, Zimmer C, Koszul R, , Filling annotation gaps in yeast genomes using genome-wide contact maps., Bioinformatics 2014 Aug; 30(15): 2105-13.
• 2014
  Marbouty M, Ermont C, Dujon B, Richard GF, Koszul R, Purification of G1 daughter cells from different Saccharomycetes species through an optimized centrifugal elutriation procedure, Yeast 2014 May;31(5):159-66.
• 2012
  Cournac A, Marie-Nelly H, Marbouty M, Koszul R, Mozziconacci J, Normalization of a chromosomal contact map, BMC Genomics 2012;13:436.