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2024Perturbation and resilience of the gut microbiome up to 3 months after β-lactams exposure in healthy volunteers suggest an important role of microbial β-lactamases., Microbiome 2024 Mar; 12(1): 50.
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2022Genome-wide mapping of individual replication fork velocities using nanopore sequencing., Nat Commun 2022 06; 13(1): 3295.
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2020Serpentine: a flexible 2D binning method for differential Hi-C analysis., Bioinformatics 2020 Jun; 36(12): 3645-3651.
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2020Mixed-model admixture mapping identifies smoking-dependent loci of lung function in African Americans., Eur J Hum Genet 2020 05; 28(5): 656-668.
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2020Large-scale genome mining allows identification of neutral polymorphisms and novel resistance mutations in genes involved in Candida albicans resistance to azoles and echinocandins., J Antimicrob Chemother 2020 04; 75(4): 835-848.
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2020High-throughput single-cell activity-based screening and sequencing of antibodies using droplet microfluidics, Nat. Biotechnol. 2020 Mar;.
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2020Quantitative global studies reveal differential translational control by start codon context across the fungal kingdom., Nucleic Acids Res 2020 03; 48(5): 2312-2331.
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2020Variants of uncertain clinical significance in hereditary breast and ovarian cancer genes: best practices in functional analysis for clinical annotation, J. Med. Genet. 2020 Mar;.
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2020The anti-IgE mAb omalizumab induces adverse reactions by engaging Fcγ receptors, J. Clin. Invest. 2020 Mar;130(3):1330-1335.
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2019A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context., Nat Commun 2019 10; 10(1): 4788.
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2019LGP2 binds to PACT to regulate RIG-I- and MDA5-mediated antiviral responses., Sci Signal 2019 Oct; 12(601): .
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2019Co-circulation and characterization of novel African arboviruses (genus Ephemerovirus) in cattle, Mayotte island, Indian Ocean, 2017, Transbound Emerg Dis 2019 Nov;66(6):2601-2604.
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2019From the environment to the host: How non-azole agrochemical exposure affects the antifungal susceptibility and virulence of Cryptococcus gattii, Sci. Total Environ. 2019 Sep;681:516-523.
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2019Correlation between RB1germline mutations and second primary malignancies in hereditary retinoblastoma patients treated with external beam radiotherapy, Eur J Med Genet 2019 Mar;62(3):217-223.
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2019Within-Host Genomic Diversity of Candida albicans in Healthy Carriers, Sci Rep 2019 Feb;9(1):2563.
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2019Identification of Recessive Lethal Alleles in the Diploid Genome of a Candida albicans Laboratory Strain Unveils a Potential Role of Repetitive Sequences in Buffering Their Deleterious Impact, mSphere 2019 02;4(1).
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2019Transcription-dependent regulation of replication dynamics modulates genome stability, Nat. Struct. Mol. Biol. 2019 01;26(1):58-66.
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2018Erratum: Generating genomic platforms to study Candida albicans pathogenesis, Nucleic Acids Res. 2018 09;46(16):8664.
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2018Generating genomic platforms to study Candida albicans pathogenesis., Nucleic Acids Res 2018 08; 46(14): 6935-6949.
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2018New susceptibility loci for cutaneous melanoma risk and progression revealed using a porcine model, Oncotarget 2018 Jun;9(45):27682-27697.
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2018Gene flow contributes to diversification of the major fungal pathogen Candida albicans, Nat Commun 2018 06;9(1):2253.
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2018The Loss of Expression of a Single Type 3 Effector (CT622) Strongly Reduces Infectivity and Growth, Front Cell Infect Microbiol 2018;8:145.
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2017Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks, Nat. Genet. 2018 Jan;50(1):42-53.
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2017Heritability of the melatonin synthesis variability in autism spectrum disorders., Sci Rep 2017 Dec; 7(1): 17746.
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2017Contribution of germline deleterious variants in the RAD51 paralogs to breast and ovarian cancers, Eur. J. Hum. Genet. 2017 12;25(12):1345-1353.
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2017A novel role for ciliary function in atopy: ADGRV1 and DNAH5 interactions, J. Allergy Clin. Immunol. 2018 May;141(5):1659-1667.e11.
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2017Proteome remodelling by the stress sigma factor RpoS/σS in Salmonella: identification of small proteins and evidence for post-transcriptional regulation., Sci Rep 2017 05; 7(1): 2127.
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2017Proteome remodelling by the stress sigma factor RpoS/σ in Salmonella: identification of small proteins and evidence for post-transcriptional regulation, Sci Rep 2017 May;7(1):2127.
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2017Network-assisted analysis of GWAS data identifies a functionally-relevant gene module for childhood-onset asthma, Sci Rep 2017 04;7(1):938.
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2016Mosaicism and prenatal diagnosis options: insights from retinoblastoma, Eur. J. Hum. Genet. 2017 02;25(3):381-383.
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2016Yeast cells reveal the misfolding and the cellular mislocalization of the human BRCA1 protein, J. Cell. Sci. 2016 12;129(23):4366-4378.
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2016Analysis of Repair Mechanisms following an Induced Double-Strand Break Uncovers Recessive Deleterious Alleles in the Candida albicans Diploid Genome, mBio 2016 10;7(5).
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2016Functional Assessment of Genetic Variants with Outcomes Adapted to Clinical Decision-Making, PLoS Genet. 2016 06;12(6):e1006096.
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2016A Parent-of-Origin Effect Impacts the Phenotype in Low Penetrance Retinoblastoma Families Segregating the c.1981C>T/p.Arg661Trp Mutation of RB1, PLoS Genet. 2016 Feb;12(2):e1005888.
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2016Signaling from Mus81-Eme2-Dependent DNA Damage Elicited by Chk1 Deficiency Modulates Replication Fork Speed and Origin Usage, Cell Rep 2016 Feb;14(5):1114-1127.
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2015Integrated pathway and epistasis analysis reveals interactive effect of genetic variants at TERF1 and AFAP1L2 loci on melanoma risk, Int. J. Cancer 2015 Oct;137(8):1901-1909.
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2015A common variant in RAB27A gene is associated with fractional exhaled nitric oxide levels in adults, Clin. Exp. Allergy 2015 Apr;45(4):797-806.
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2015BRCA1 Circos: a visualisation resource for functional analysis of missense variants, J. Med. Genet. 2015 Apr;52(4):224-30.
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2014A spontaneous KRT16 mutation in a dog breed: a model for human focal non-epidermolytic palmoplantar keratoderma (FNEPPK), J. Invest. Dermatol. 2015 Apr;135(4):1187-1190.
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2014Rare missense variants in POT1 predispose to familial cutaneous malignant melanoma, Nat. Genet. 2014 May;46(5):482-6.
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2014A preliminary study of viral metagenomics of French bat species in contact with humans: identification of new mammalian viruses, PLoS ONE 2014;9(1):e87194.
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2013Common fragile site profiling in epithelial and erythroid cells reveals that most recurrent cancer deletions lie in fragile sites hosting large genes, Cell Rep 2013 Aug;4(3):420-8.
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2013Candida albicans is not always the preferential yeast colonizing humans: a study in Wayampi Amerindians, J. Infect. Dis. 2013 Nov;208(10):1705-16.
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2013Genomic characterization of Sebokele virus 1 (SEBV1) reveals a new candidate species among the genus Parechovirus, J. Gen. Virol. 2013 Jul;94(Pt 7):1547-53.
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2011Annotation of the domestic dog genome sequence: finding the missing genes, Mamm. Genome 2012 Feb;23(1-2):124-31.
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2011Molecular profiling of common fragile sites in human fibroblasts, Nat. Struct. Mol. Biol. 2011 Nov;18(12):1421-3.
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2011Assessment of human Nter and Cter BRCA1 mutations using growth and localization assays in yeast, Hum. Mutat. 2011 Dec;32(12):1470-80.
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2011Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping, PLoS Genet. 2011 Oct;7(10):e1002316.
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2011Correlation of LNCR rasiRNAs expression with heterochromatin formation during development of the holocentric insect Spodoptera frugiperda, PLoS ONE 2011;6(9):e24746.
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2011In search of lost trajectories: Recovering the diversification of transposable elements, Mob Genet Elements 2011 Jul;1(2):151-154.
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2010Nucleotide supply, not local histone acetylation, sets replication origin usage in transcribed regions, EMBO Rep. 2010 Sep;11(9):698-704.
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2010Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements, Proc. Natl. Acad. Sci. U.S.A. 2010 Apr;107(17):7680-5.
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2010Genome sequence of the pea aphid Acyrthosiphon pisum, PLoS Biol. 2010 Feb;8(2):e1000313.
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2009RNA profiles of rat olfactory epithelia: individual and age related variations, BMC Genomics 2009 Dec;10:572.
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2009Epidemiology, pathology, and genetics of histiocytic sarcoma in the Bernese mountain dog breed, J. Hered. 2009 Jul-Aug;100 Suppl 1:S19-27.
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2008Human immunodeficiency virus-associated thrombotic microangiopathies: clinical characteristics and outcome according to ADAMTS13 activity, Scand. J. Immunol. 2008 Sep;68(3):337-44.
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2008Proteome analysis of differentiating human myoblasts by dialysis-assisted two-dimensional gel electrophoresis (DAGE), Proteomics 2008 Jan;8(2):264-78.
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2004Severe ADAMTS13 deficiency in adult idiopathic thrombotic microangiopathies defines a subset of patients characterized by various autoimmune manifestations, lower platelet count, and mild renal involvement, Medicine (Baltimore) 2004 Jul;83(4):233-44.
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2004The ERPIN server: an interface to profile-based RNA motif identification, Nucleic Acids Res. 2004 Jul;32(Web Server issue):W160-5.
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2003Structural study of DNA duplex containing an N-(2-deoxy-beta-D-erythro-pentofuranosyl) formamide frameshift by NMR and restrained molecular dynamics, Nucleic Acids Res. 2003 Oct;31(20):5930-40.
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2003Constitutive and specific activation of STAT3 by BCR-ABL in embryonic stem cells, Oncogene 2003 Jun;22(26):4102-10.
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2002Requirement for mitogen-activated protein kinase activation in the response of embryonic stem cell-derived hematopoietic cells to thrombopoietin in vitro, Blood 2002 Feb;99(4):1174-82.
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2001The granulocyte colony-stimulating factor receptor supports erythroid differentiation in the absence of the erythropoietin receptor or Stat5, Br. J. Haematol. 2001 Feb;112(2):449-58.
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2000Solution structure by NMR and molecular dynamics of a duplex containing a guanine opposite a N-(2-deoxy-beta-D-erythro-pentofuranosyl)formamide lesion, Biochemistry 2000 May;39(18):5614-21.
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