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2018Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq, Cell 2018 May;173(6):1520-1534.e20.
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2018A Myc enhancer cluster regulates normal and leukaemic haematopoietic stem cell hierarchies, Nature 2018 Jan;553(7689):515-520.
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2017Two independent modes of chromatin organization revealed by cohesin removal, Nature 2017 Nov;551(7678):51-56.
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2016The Shh Topological Domain Facilitates the Action of Remote Enhancers by Reducing the Effects of Genomic Distances, Dev. Cell 2016 39(5) 529-543.
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2016Formation of new chromatin domains determines pathogenicity of genomic duplications, Nature. 2016;538: 265–269..
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2016Gene regulation at a distance: from remote enhancers to 3D regulatory ensembles, Semin. Cell Dev. Biol. 2016 Jun;.
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2016Cis-regulatory architecture of a brain signaling center predates the origin of chordates, Nat. Genet. 2016 May;48(5):575-80.
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2015Gene regulation during development in the light of topologically associating domains, Wiley Interdiscip Rev Dev Biol 2016 Mar-Apr;5(2):169-85.
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2015Model mice for 15q11-13 duplication syndrome exhibit late-onset obesity and altered lipid metabolism, Hum. Mol. Genet. 2015 Aug;24(16):4559-72.
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2015Hoxa2 selectively enhances Meis binding to change a branchial arch ground state, Dev. Cell 2015 Feb;32(3):265-77.
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2015A discrete transition zone organizes the topological and regulatory autonomy of the adjacent tfap2c and bmp7 genes, PLoS Genet. 2015 Jan;11(1):e1004897.
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2014The architecture of gene expression: integrating dispersed cis-regulatory modules into coherent regulatory domains, Curr. Opin. Genet. Dev. 2014 Aug;27:74-82.
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2014Long-range enhancers regulating Myc expression are required for normal facial morphogenesis, Nat. Genet. 2014 Jul;46(7):753-8.
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2014Functional and topological characteristics of mammalian regulatory domains, Genome Res. 2014 Mar;24(3):390-400.
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2013Efficient site-specific transgenesis and enhancer activity tests in medaka using PhiC31 integrase, Development 2013 Oct;140(20):4287-95.
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2013A switch between topological domains underlies HoxD genes collinearity in mouse limbs, Science 2013 Jun;340(6137):1234167.
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2013From remote enhancers to gene regulation: charting the genome’s regulatory landscapes, Philos. Trans. R. Soc. Lond., B, Biol. Sci. 2013;368(1620):20120358.
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2013TRACER: a resource to study the regulatory architecture of the mouse genome, BMC Genomics 2013;14:215.
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2013An integrated holo-enhancer unit defines tissue and gene specificity of the Fgf8 regulatory landscape, Dev. Cell 2013 Mar;24(5):530-42.
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2013Phenotypic impact of genomic structural variation: insights from and for human disease, Nat. Rev. Genet. 2013 Feb;14(2):125-38.
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2012Transcription factors: from enhancer binding to developmental control, Nat. Rev. Genet. 2012 Sep;13(9):613-26.
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2011A regulatory archipelago controls Hox genes transcription in digits, Cell 2011 Nov;147(5):1132-45.
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2011Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor, Nat. Genet. 2011 Apr;43(4):379-86.
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2010A systematic enhancer screen using lentivector transgenesis identifies conserved and non-conserved functional elements at the Olig1 and Olig2 locus, PLoS ONE 2010;5(12):e15741.
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2010KAP1 controls endogenous retroviruses in embryonic stem cells, Nature 2010 Jan;463(7278):237-40.
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2010Control of vertebrate Hox clusters by remote and global cis-acting regulatory sequences, Adv. Exp. Med. Biol. 2010;689:63-78.
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2009Uncoupling time and space in the collinear regulation of Hox genes, PLoS Genet. 2009 Mar;5(3):e1000398.
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2008Analysis of mammalian gene batteries reveals both stable ancestral cores and highly dynamic regulatory sequences, Genome Biol. 2008;9(12):R172.
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2008Genotypic features of lentivirus transgenic mice, J. Virol. 2008 Jul;82(14):7111-9.
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2008Characterization of mouse Dactylaplasia mutations: a model for human ectrodactyly SHFM3, Mamm. Genome 2008 Apr;19(4):272-8.
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2008Global control regions and regulatory landscapes in vertebrate development and evolution, Adv. Genet. 2008;61:175-205.
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2007Transgenic analysis of Hoxd gene regulation during digit development, Dev. Biol. 2007 Jun;306(2):847-59.
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2005Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes, Nat. Genet. 2005 Aug;37(8):889-93.
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2004Six1 and Eya1 expression can reprogram adult muscle from the slow-twitch phenotype into the fast-twitch phenotype, Mol. Cell. Biol. 2004 Jul;24(14):6253-67.
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2004Mouse limb deformity mutations disrupt a global control region within the large regulatory landscape required for Gremlin expression, Genes Dev. 2004 Jul;18(13):1553-64.
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2003A global control region defines a chromosomal regulatory landscape containing the HoxD cluster, Cell 2003 May;113(3):405-17.
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2002Fiber-type specific and position-dependent expression of a transgene in limb muscles, Differentiation 2002 Oct;70(8):457-67.
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2002A t(2;8) balanced translocation with breakpoints near the human HOXD complex causes mesomelic dysplasia and vertebral defects, Genomics 2002 Apr;79(4):493-8.
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2001Large scale transgenic and cluster deletion analysis of the HoxD complex separate an ancestral regulatory module from evolutionary innovations, Genes Dev. 2001 Sep;15(17):2209-14.
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2000The alpha subunits of Gz and Gi interact with the eyes absent transcription cofactor Eya2, preventing its interaction with the six class of homeodomain-containing proteins, J. Biol. Chem. 2000 Oct;275(41):32129-34.
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1999Developmental regulation of the aldolase A muscle-specific promoter during in vivo muscle maturation is controlled by a nuclear receptor binding element, J. Mol. Biol. 1999 Jun;289(4):893-903.
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1998Expression of myogenin during embryogenesis is controlled by Six/sine oculis homeoproteins through a conserved MEF3 binding site, Proc. Natl. Acad. Sci. U.S.A. 1998 Nov;95(24):14220-5.
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1998Proximal sequences of the aldolase A fast muscle-specific promoter direct nerve- and activity-dependent expression in transgenic mice, J. Biol. Chem. 1998 Jun;273(24):14975-81.
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1998The human pH aldolase A promoter directs widespread but muscle-predominant expression in transgenic mice, Transgenic Res. 1998 Mar;7(2):113-21.
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1998A binding site for nuclear receptors is required for the differential expression of the aldolase A fast-twitch muscle promoter in body and head muscles, J. Biol. Chem. 1998 Jan;273(1):561-7.
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1997A combination of MEF3 and NFI proteins activates transcription in a subset of fast-twitch muscles, Mol. Cell. Biol. 1997 Feb;17(2):656-66.
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1995Myotube-specific activity of the human aldolase A M-promoter requires an overlapping binding site for NF1 and MEF2 factors in addition to a binding site (M1) for unknown proteins, J. Mol. Biol. 1995 Oct;253(1):17-31.