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2025InDeepNet: a web platform for predicting functional binding sites in proteins using InDeep., Nucleic Acids Res 2025 May; (): .
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2024A comprehensive dataset of protein-protein interactions and ligand binding pockets for advancing drug discovery, Scientific Data , 2024, 11 (1), pp.402. ⟨10.1038/s41597-024-03233-z⟩.
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2022InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein–protein interactions, Bioinformatics, 2021, 38 (5), pp.1261 - 1268. ⟨10.1093/bioinformatics/btab849⟩.
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2021Phylogenetic analysis of Harmonin homology domains, BMC Bioinformatics, 2021, 22 (1), pp.190. ⟨10.1186/s12859-021-04116-5⟩.
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2021The iPPI-DB initiative: a community-centered database of protein–protein interaction modulators, Bioinformatics, 2021, 37 (1), pp.89-96. ⟨10.1093/bioinformatics/btaa1091⟩.
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2021New machine learning and physics-based scoring functions for drug discovery., Sci Rep 2021 Feb; 11(1): 3198.
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2020Fr-PPIChem: An academic compound library dedicated to protein-protein interactions, ACS Chem. Biol. 2020 Apr;.
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2017Privileged Substructures to Modulate Protein-Protein Interactions, J Chem Inf Model 2017 Oct;57(10):2448-2462.
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2016Imbalance in chemical space: How to facilitate the identification of protein-protein interaction inhibitors, Sci Rep 2016 Apr;6:23815.
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2015Sampling of conformational ensemble for virtual screening using molecular dynamics simulations and normal mode analysis, Future Med Chem 2015;7(17):2317-31.
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