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© Adeline Mallet
Nématodes Caenorhabditis elegans en microscopie électronique à balayage.
Publication : Molecular phylogenetics and evolution

rely.py, a python script to detect reliable clades

Scientific Fields
Diseases
Organisms
Applications
Technique

Published in Molecular phylogenetics and evolution - 02 Oct 2009

Li B, Dettai A, Lecointre G

Link to Pubmed [PMID] – 19800976

Mol. Phylogenet. Evol. 2010 Jan;54(1):306-8

rely.py is a program implementing the method to detect independently repeated clades by comparing phylogenies as described in Li and Lecointre (2009) and adapted to incompletely overlapping datasets in Li et al. (2009). The comparison can be performed on trees obtained by any inference method (maximum parsimony, Bayesian inference, maximum likelihood). The program computes repetition indices, provides greedy summary trees for each validity domain and a nexus matrix representation of the clades weighted by their repetition indices. The additional script concatnexus.py assists the user in preparing the primary analyses, but it can also be used separately to concatenate nexus datasets.

https://www.ncbi.nlm.nih.gov/pubmed/19800976