Timeline

Bertrand Néron

Research Engineer

03 Jan 2024

publication

Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites

26 Sep 2023

project

Deep Learning group

01 Sep 2023

publication

BioConvert: a comprehensive format converter for life sciences.

30 May 2023

software

SatelliteFinder

24 Mar 2023

publication

MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes

24 Mar 2022

publication

IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella.

25 Oct 2021

publication

Extracting Dynamical Correlations and Identifying Key Residues for Allosteric Communication in Proteins by correlationplus.

24 Aug 2021

course

Analyse de données reproductible

19 Jul 2018

course

Scientific Programming in Python

19 Jul 2018

course

Introduction to Python Programming

19 Jul 2018

course

Introduction to data analysis

19 Jul 2018

project

Bioconvert

02 Jul 2018

publication

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

18 May 2018

publication

Antisense transcriptional interference mediates condition-specific gene repression in budding yeast

28 Mar 2018

team

Expertise group : ALPS – Algorithmics and programming in science

16 Aug 2017

software

Counter RNAseq Window (CRAW)

24 Jul 2017

publication

Abundance and co-occurrence of extracellular capsules increase environmental breadth: Implications for the emergence of pathogens

15 Jun 2016

project

Bioweb

29 Apr 2016

publication

Identification and analysis of integrons and cassette arrays in bacterial genomes.

16 Mar 2016

publication

Identification of protein secretion systems in bacterial genomes

01 Mar 2016

tool

TXSSdb, a database of protein secretion systems

10 Nov 2015

software

IntegronFinder

08 Oct 2015

tool

TXSScan – models and profiles for protein secretion systems

26 Sep 2015

project

Mobyle

05 Sep 2015

tool

Secreton – Non-Flagellar Type III Secretion Systems in sequenced genomes

05 Sep 2015

tool

ConjDB – a database of conjugative & mobilization systems and T4SS

05 Sep 2015

software

CONJscan-T4SSscan

04 Sep 2015

software

MacSyFinder & MacSyView

26 Jun 2015

team

Bioinformatics and Biostatistics HUB

17 Oct 2014

publication

MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems

12 Mar 2014

publication

Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion

01 Jan 2012

publication

Bioinformatics Applications Discovery and Composition with the Mobyle Suite and MobyleNet

17 Aug 2009

publication

Mobyle: a new full web bioinformatics framework

15 Aug 2002

publication

Activated MAPK/ERK kinase (MEK-1) induces transdifferentiation of pigmented epithelium into neural retina

01 Sep 2001

publication

Cloning and characterization of a novel transcription factor involved in cellular proliferation arrest: PATF

01 Apr 2001

publication

Role of QN1 protein in cell proliferation arrest and differentiation during the neuroretina development

01 May 1998

publication

A little guide for advanced search:

Timeline

Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites

Deep Learning group

BioConvert: a comprehensive format converter for life sciences.

SatelliteFinder

MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes

IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella.

Extracting Dynamical Correlations and Identifying Key Residues for Allosteric Communication in Proteins by correlationplus.

Analyse de données reproductible

Scientific Programming in Python

Introduction to Python Programming

Introduction to data analysis

Bioconvert

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

Antisense transcriptional interference mediates condition-specific gene repression in budding yeast

Expertise group : ALPS – Algorithmics and programming in science

Counter RNAseq Window (CRAW)

Abundance and co-occurrence of extracellular capsules increase environmental breadth: Implications for the emergence of pathogens

Bioweb

Identification and analysis of integrons and cassette arrays in bacterial genomes.

Identification of protein secretion systems in bacterial genomes

TXSSdb, a database of protein secretion systems

IntegronFinder

TXSScan – models and profiles for protein secretion systems

Mobyle

Secreton – Non-Flagellar Type III Secretion Systems in sequenced genomes

ConjDB – a database of conjugative & mobilization systems and T4SS

CONJscan-T4SSscan

MacSyFinder & MacSyView

Bioinformatics and Biostatistics HUB

MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems

Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion

Bioinformatics Applications Discovery and Composition with the Mobyle Suite and MobyleNet

Mobyle: a new full web bioinformatics framework

Activated MAPK/ERK kinase (MEK-1) induces transdifferentiation of pigmented epithelium into neural retina

Cloning and characterization of a novel transcription factor involved in cellular proliferation arrest: PATF

Role of QN1 protein in cell proliferation arrest and differentiation during the neuroretina development

Retinal dysplasia in mice lacking p56lck