Timeline

Benjamin Bardiaux

Permanent Researcher

30 Oct 2024

publication

Dynamic interplay between a TonB-dependent heme transporter and a TonB protein in a membrane environment

26 Sep 2024

publication

Biophysical insights into sugar-dependent medium acidification promoting YfaL protein-mediated Escherichia coli self-aggregation, biofilm formation and acid stress resistance.

23 Sep 2024

event

Half-day “AI in structural biology: What’s next”

22 Jun 2024

publication

NMR resonance assignment of the cell death execution domain BELL2 from multicellular bacterial signalosomes.

04 Jun 2024

publication

Atomic resolution structure of full-length human insulin fibrils.

07 Mar 2024

publication

Restraint validation of biomolecular structures determined by NMR in the Protein Data Bank.

06 Jan 2024

publication

Ton motor conformational switch and peptidoglycan role in bacterial nutrient uptake.

08 Dec 2023

publication

Membrane platform protein PulF of the Klebsiella type II secretion system forms a trimeric ion channel essential for endopilus assembly and protein secretion.

23 Nov 2023

publication

The Mla system of diderm Firmicute Veillonella parvula reveals an ancestral transenvelope bridge for phospholipid trafficking.

12 Nov 2023

publication

A poly-proline II helix in YadA from Yersinia enterocolitica serotype O:9 facilitates heparin binding through electrostatic interactions.

07 Nov 2023

publication

Structural Analysis of Proteins from Bacterial Secretion Systems and Their Assemblies by NMR Spectroscopy

02 Feb 2023

publication

Structure and dynamic association of an assembly platform subcomplex of the bacterial type II secretion system.

01 Feb 2023

news

Bacterial pathogenicity: improving understanding of an essential process – molecule secretion

13 Sep 2022

publication

Building Protein Atomic Models from Cryo-EM Density Maps and Residue Co-Evolution.

11 Sep 2022

project

Energir: Energy dependent iron import by Gram-negative bacteria

20 Jul 2022

publication

Mechanism of threonine ADP-ribosylation of F-actin by a Tc toxin.

28 Apr 2022

publication

Secondary structure and 1H, 15 N & 13C resonance assignments of the periplasmic domain of OutG, major pseudopilin from Dickeya dadantii type II secretion system.

26 Jan 2022

publication

Characterization of the Interaction Domains between the Phosphoprotein and the Nucleoprotein of Human Metapneumovirus.

03 Nov 2021

publication

Characterization of the interaction domains between the phosphoprotein and the nucleoprotein of human Metapneumovirus.

01 Oct 2021

publication

1 H, 15 N and 13 C resonance assignments of the C-terminal domain of PulL, a component of the Klebsiella oxytoca type II secretion system

28 Sep 2021

project

ANR OM-LipAsy: Outer membrane lipid asymmetry in Veillonella parvula, an atypical diderm Firmicute

11 Sep 2021

publication

Computational and biochemical analysis of type IV pilus dynamics and stability.

19 Aug 2021

publication

1H, 15 N and 13C resonance assignments of the C-terminal domain of PulL, a component of the Klebsiella oxytoca type II secretion system.

17 Aug 2021

publication

A Structural and Dynamic Analysis of the Partially Disordered Polymerase-Binding Domain in RSV Phosphoprotein.

14 Jul 2021

publication

Host-Pathogen Adhesion as the Basis of Innovative Diagnostics for Emerging Pathogens.

02 Jun 2021

event

JOBIM Mini-symposium “Integrative structural modeling in the era of big data and artificial intelligence”

05 Jan 2021

publication

Structural and molecular basis of cross-seeding barriers in amyloids.

01 Jan 2021

publication

Structures of Pathological and Functional Amyloids and Prions, a Solid-State NMR Perspective.

15 Jun 2020

publication

Aβ(1-42) tetramer and octamer structures reveal edge conductivity pores as a mechanism for membrane damage.

08 May 2020

publication

ARIAweb: a server for automated NMR structure calculation.

21 Apr 2020

tool

ARIAweb: a server for automated NMR structure calculation

29 Nov 2019

publication

Structure and function of minor pilins of type IV pili.

15 Nov 2019

publication

Quantitative Structural Interpretation of Protein Crosslinks

31 Jul 2019

project

Synergy_T2SS

08 Jul 2019

event

Department of Structural Biology and Chemistry seminar: Dr. Pablo Chacon, Fitting tools for integrative structural biology

23 May 2019

publication

Dynamics of a type 2 secretion system pseudopilus unraveled by complementary approaches

09 Apr 2019

publication

Structure and Assembly of the Enterohemorrhagic Escherichia coli Type 4 Pilus.

05 Feb 2019

publication

Single-site phosphorylation within the His-tag sequence attached to a recombinant protein

15 Oct 2018

publication

Biogenesis and structure of a type VI secretion baseplate

27 Sep 2018

publication

Structure and dynamics of Helicobacter pylori nickel-chaperone HypA: an integrated approach using NMR spectroscopy, functional assays and computational tools

29 May 2018

publication

The protofilament architecture of a de novo designed coiled coil-based amyloidogenic peptide

26 Apr 2018

publication

Minimal NMR distance information for rigidity of protein graphs

05 Apr 2018

publication

3D Structure Determination of Amyloid Fibrils using Solid-State NMR Spectroscopy

16 Mar 2018

publication

Ordering Protein Contact Matrices

09 Mar 2018

publication

Tuning interval Branch-and-Prune for protein structure determination

27 Jan 2018

publication

Sequence-specific DNA binding activity of the cross-brace zinc finger motif of the piggyBac transposase

12 Dec 2017

publication

Structure of outer membrane protein G in lipid bilayers

28 Nov 2017

project

ViBrANT (Viral and Bacterial Adhesin Network Training)

28 Sep 2017

publication

Structural Characterization of Whirlin Reveals an Unexpected and Dynamic Supramodule Conformation of Its PDZ Tandem

25 Apr 2017

event

Computational geometry for the determination of biomolecular structures

16 Feb 2017

event

Dirk Linke seminar

11 Nov 2016

event

Ecole thématique – Bioinformatics of protein-protein interactions for wet lab scientists

02 Mar 2016

project

ARIA for hybrid structure determination on the cloud

05 Jan 2016

publication

Structure determination of helical filaments by solid-state NMR spectroscopy

12 Oct 2015

publication

The chaperone αB-crystallin uses different interfaces to capture an amorphous and an amyloid client

14 Sep 2015

publication

Neisseria meningitidis Type IV Pili Composed of Sequence Invariable Pilins Are Masked by Multisite Glycosylation

31 Aug 2015

publication

Solid-state NMR Study of the YadA Membrane-Anchor Domain in the Bacterial Outer Membrane

28 Aug 2015

team

Bacterial transmembrane systems

23 Jul 2015

software

ARIA (Ambiguous Restraints for Iterative Assignment)

22 Jul 2015

publication

Biogenesis and structure of a type VI secretion membrane core complex

07 Jul 2015

project

ERC-2011-AdG BAYCELLS

07 Jul 2015

project

Bip:Bip

07 Jul 2015

project

Bacterial Transmembrane Signaling

01 Jun 2015

publication

NMR Exchange Format: a unified and open standard for representation of NMR restraint data

11 Apr 2015

publication

Improved reliability, accuracy and quality in automated NMR structure calculation with ARIA

25 Jul 2014

publication

Solid-state NMR structure determination from diagonal-compensated, sparsely nonuniform-sampled 4D proton-proton restraints

04 Dec 2013

publication

The mechanism of denaturation and the unfolded state of the α-helical membrane-associated protein Mistic

11 Nov 2012

publication

Membrane-protein structure determination by solid-state NMR spectroscopy of microcrystals

31 May 2012

publication

Efficient modeling of symmetric protein aggregates from NMR data

01 Jan 2012

publication

ARIA for solution and solid-state NMR

15 Nov 2011

publication

Structural and mechanistic implications of metal binding in the small heat-shock protein αB-crystallin

28 Sep 2011

publication

A software framework for analysing solid-state MAS NMR data

04 Apr 2011

publication

N-terminal domain of alphaB-crystallin provides a conformational switch for multimerization and structural heterogeneity

24 Mar 2011

publication

Structure calculation from unambiguous long-range amide and methyl 1H-1H distance restraints for a microcrystalline protein with MAS solid-state NMR spectroscopy

01 Mar 2011

publication

Bayesian estimation of NMR restraint potential and weight: a validation on a representative set of protein structures

29 Aug 2010

publication

Solid-state NMR and SAXS studies provide a structural basis for the activation of alphaB-crystallin oligomers

28 Jun 2010

publication

Structural insights into serine-rich fimbriae from Gram-positive bacteria

09 Jun 2010

publication

Simultaneous use of solution, solid-state NMR and X-ray crystallography to study the conformational landscape of the Crh protein during oligomerization and crystallization

15 May 2009

publication

Influence of different assignment conditions on the determination of symmetric homodimeric structures with ARIA

10 Sep 2008

publication

Accurate NMR structures through minimization of an extended hybrid energy

05 Jun 2008

publication

Graphical analysis of NMR structural quality and interactive contact map of NOE assignments in ARIA

20 Feb 2008

publication

3D structure determination of the Crh protein from highly ambiguous solid-state NMR restraints

22 Nov 2006

publication

ARIA2: automated NOE assignment and data integration in NMR structure calculation

01 Mar 2006

publication

Comparison of different torsion angle approaches for NMR structure determination

27 May 2004

publication

A little guide for advanced search:

Dynamic interplay between a TonB-dependent heme transporter and a TonB protein in a membrane environment

Biophysical insights into sugar-dependent medium acidification promoting YfaL protein-mediated Escherichia coli self-aggregation, biofilm formation and acid stress resistance.

Half-day “AI in structural biology: What’s next”

NMR resonance assignment of the cell death execution domain BELL2 from multicellular bacterial signalosomes.

Atomic resolution structure of full-length human insulin fibrils.

Restraint validation of biomolecular structures determined by NMR in the Protein Data Bank.

Ton motor conformational switch and peptidoglycan role in bacterial nutrient uptake.

Membrane platform protein PulF of the Klebsiella type II secretion system forms a trimeric ion channel essential for endopilus assembly and protein secretion.

The Mla system of diderm Firmicute Veillonella parvula reveals an ancestral transenvelope bridge for phospholipid trafficking.

A poly-proline II helix in YadA from Yersinia enterocolitica serotype O:9 facilitates heparin binding through electrostatic interactions.

Structural Analysis of Proteins from Bacterial Secretion Systems and Their Assemblies by NMR Spectroscopy

Structure and dynamic association of an assembly platform subcomplex of the bacterial type II secretion system.

Bacterial pathogenicity: improving understanding of an essential process – molecule secretion

Building Protein Atomic Models from Cryo-EM Density Maps and Residue Co-Evolution.

Energir: Energy dependent iron import by Gram-negative bacteria

Mechanism of threonine ADP-ribosylation of F-actin by a Tc toxin.

Secondary structure and 1H, 15 N & 13C resonance assignments of the periplasmic domain of OutG, major pseudopilin from Dickeya dadantii type II secretion system.

Characterization of the Interaction Domains between the Phosphoprotein and the Nucleoprotein of Human Metapneumovirus.

Characterization of the interaction domains between the phosphoprotein and the nucleoprotein of human Metapneumovirus.

1 H, 15 N and 13 C resonance assignments of the C-terminal domain of PulL, a component of the Klebsiella oxytoca type II secretion system

ANR OM-LipAsy: Outer membrane lipid asymmetry in Veillonella parvula, an atypical diderm Firmicute

Computational and biochemical analysis of type IV pilus dynamics and stability.

1H, 15 N and 13C resonance assignments of the C-terminal domain of PulL, a component of the Klebsiella oxytoca type II secretion system.

A Structural and Dynamic Analysis of the Partially Disordered Polymerase-Binding Domain in RSV Phosphoprotein.

Host-Pathogen Adhesion as the Basis of Innovative Diagnostics for Emerging Pathogens.

JOBIM Mini-symposium “Integrative structural modeling in the era of big data and artificial intelligence”

Structural and molecular basis of cross-seeding barriers in amyloids.

Structures of Pathological and Functional Amyloids and Prions, a Solid-State NMR Perspective.

Aβ(1-42) tetramer and octamer structures reveal edge conductivity pores as a mechanism for membrane damage.

ARIAweb: a server for automated NMR structure calculation.

ARIAweb: a server for automated NMR structure calculation

Structure and function of minor pilins of type IV pili.

Quantitative Structural Interpretation of Protein Crosslinks

Synergy_T2SS

Department of Structural Biology and Chemistry seminar: Dr. Pablo Chacon, Fitting tools for integrative structural biology

Dynamics of a type 2 secretion system pseudopilus unraveled by complementary approaches

Structure and Assembly of the Enterohemorrhagic Escherichia coli Type 4 Pilus.

Single-site phosphorylation within the His-tag sequence attached to a recombinant protein

Biogenesis and structure of a type VI secretion baseplate

Structure and dynamics of Helicobacter pylori nickel-chaperone HypA: an integrated approach using NMR spectroscopy, functional assays and computational tools

The protofilament architecture of a de novo designed coiled coil-based amyloidogenic peptide

Minimal NMR distance information for rigidity of protein graphs

3D Structure Determination of Amyloid Fibrils using Solid-State NMR Spectroscopy

Ordering Protein Contact Matrices

Tuning interval Branch-and-Prune for protein structure determination

Sequence-specific DNA binding activity of the cross-brace zinc finger motif of the piggyBac transposase

Structure of outer membrane protein G in lipid bilayers

ViBrANT (Viral and Bacterial Adhesin Network Training)

Structural Characterization of Whirlin Reveals an Unexpected and Dynamic Supramodule Conformation of Its PDZ Tandem

Computational geometry for the determination of biomolecular structures

Dirk Linke seminar

Ecole thématique – Bioinformatics of protein­-protein interactions for wet lab scientists

ARIA for hybrid structure determination on the cloud

Structure determination of helical filaments by solid-state NMR spectroscopy

The chaperone αB-crystallin uses different interfaces to capture an amorphous and an amyloid client

Neisseria meningitidis Type IV Pili Composed of Sequence Invariable Pilins Are Masked by Multisite Glycosylation

Solid-state NMR Study of the YadA Membrane-Anchor Domain in the Bacterial Outer Membrane

Bacterial transmembrane systems

ARIA (Ambiguous Restraints for Iterative Assignment)

Biogenesis and structure of a type VI secretion membrane core complex

ERC-2011-AdG BAYCELLS

Bip:Bip

Bacterial Transmembrane Signaling

NMR Exchange Format: a unified and open standard for representation of NMR restraint data

Improved reliability, accuracy and quality in automated NMR structure calculation with ARIA

Solid-state NMR structure determination from diagonal-compensated, sparsely nonuniform-sampled 4D proton-proton restraints

The mechanism of denaturation and the unfolded state of the α-helical membrane-associated protein Mistic

Membrane-protein structure determination by solid-state NMR spectroscopy of microcrystals

Efficient modeling of symmetric protein aggregates from NMR data

ARIA for solution and solid-state NMR

Structural and mechanistic implications of metal binding in the small heat-shock protein αB-crystallin

A software framework for analysing solid-state MAS NMR data

N-terminal domain of alphaB-crystallin provides a conformational switch for multimerization and structural heterogeneity

Structure calculation from unambiguous long-range amide and methyl 1H-1H distance restraints for a microcrystalline protein with MAS solid-state NMR spectroscopy

Bayesian estimation of NMR restraint potential and weight: a validation on a representative set of protein structures

Solid-state NMR and SAXS studies provide a structural basis for the activation of alphaB-crystallin oligomers

Structural insights into serine-rich fimbriae from Gram-positive bacteria

Simultaneous use of solution, solid-state NMR and X-ray crystallography to study the conformational landscape of the Crh protein during oligomerization and crystallization

Influence of different assignment conditions on the determination of symmetric homodimeric structures with ARIA

Ecole thématique – Bioinformatics of protein-protein interactions for wet lab scientists