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Responsable de Structure
Development of methods in computational structural biology
Development of methods in computational structural biology (PI)
We are developing new computational methods to calculate the electrostatics of proteins, understand their dynamical properties and simulate transitions between two known conformations of the same macromolecule.
DNA Replication and Synthetic Biology
DNA Replication and Synthetic Biology (PI)
We work with archaeal DNA polymerases to make them accept xeno-nucleotides and synthesize variants of DNA and RNA in vivo.
DNA Repair and Cancer
Marc Delarue (PI)
We study the mechanism of DNA Repair of (DNA) Double Strand Breaks through the so-called Non-Homologous End Joining (NHEJ) process in mammals using x-ray crystallography and structural studies of pol mu and Tdt
Marc Delarue (PI)
We have developed a new way to calculate electrostatics properties of biological macromolecules in a polarizable solvent: AquaSol. We can then compute the solvent density around proteins as well as their SAXS spectra: AquaSAXS.
2018Enzymatic synthesis of random sequences of RNA and RNA analogues by DNA polymerase theta mutants for the generation of aptamer libraries, Nucleic Acids Res. 2018 May 21. doi: 10.1093/nar/gky413.
2018Enzymatic synthesis of random sequences of RNA and RNA analogues by DNA polymerase t heta mutants for the generation of aptamer libraries, in press.
2018Terminal deoxynucleotidyltransferase: the story of an untemplated DNA polymerase capable of DNA bridging and templated synthesis across strands, Curr Opin Struct Biol. 2018 Apr 12;53:22-31..
2018Structural basis for a bimodal allosteric mechanism of general anesthetic modulation in pentameric ligand-gated ion channels, Cell Rep. 2018 Apr 24;23(4):993-1004..
2018Crystal structures of a pentameric ion channel gated by alkaline pH show a widely open pore and identify a cavity for modulation, Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):E3959-E3968..
2017Full mutational mapping of titratable residues helps to identify proton-sensors involved in the control of channel gating in the Gloeobacter violaceus pentameric ligand-gated ion channel., PLoS Biol. 2017 15(12):e2004470..
2017Ab initio sampling of transition paths by Conditioned Langevin Dynamics, J Chem Phys. 2017 Oct 21;147(15):152703..
2017The Renormalization Group and Its Applications to Generating Coarse-Grained Models of Large Biological Molecular Systems., J Chem Theory Comput. 2017 Mar 14;13(3):1424-1438..
2017Barbiturates Bind in the GLIC Ion Channel Pore and Cause Inhibition by Stabilizing a Closed State, J Biol Chem. 2017 Feb 3;292(5):1550-1558..
2016Comparative Normal Mode Analysis of the Dynamics of DENV and ZIKV Capsids, Front Mol Biosci 2016;3:85.
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Unite de Dynamique Structurales des Macromolecules Biologiques
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