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Membres
Valérie Briolat
Chef(fe) de Groupe
Responsable
Anciens Membres
Services
Equipments: Shared Room
The objectif of this service is to simplify access to the autonomous use of our machines
Training: Next Generation Sequencing
The objective is to support you in the preparation of NGS experiment.
Équipements
Genotyping • Illumina • (Autonomous)
Description Genotyping is a method for determining the variation of genetic sequences in human samples for the purposes of research studies, disease associations or population associations, and for detecting variants, CNVs, etc. Usage […]
Qubit • Invitrogen • (Autonomous)
Description Qubit doses nucleic acids in a sensitive and specific way: accurately measures the concentration of nucleic acids, whether they are double-stranded DNA, single-stranded DNA, total RNA or microRNA, even in the presence of […]
COVARIS • E220 • (Autonomous)
Description Covaris is recognized as the reference for DNA fragmentation. Adaptive Focused Acoustics technology (AFA™) allows precise control of the mechanical fragmentation of DNA. In addition, this process is isothermal, so it does not […]
MiniSeq • Illumina • (Autonomous)
MiniSeq NGS low throughput Description The MiniSeq is a low throughput NGS sequencer using the same types of libraries as other Illumina sequencers. Its multiple cassettes make it flexible. Usage For autonomous […]
iSeq100 • Illumina • (Autonomous)
ISeq 100 Description The ISeq 100 is a low output NGS sequencer using the same types of libraries as the other Illumina sequencers. It is particularly suitable for WGS […]
Publications
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2020Mining zebrafish microbiota reveals key community-level resistance against fish pathogen infection., ISME J 2020 Oct 19. Online ahead of print..
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2020SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis., BMC Bioinformatics 2020 Aug; 21(1): 345.
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2020Differential DNA methylation in experienced meditators after an intensive day of mindfulness-based practice: Implications for immune-related pathways., Brain Behav. Immun. 2020 Feb; 84(): 36-44.
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2019IFN-Stimulated Genes in Zebrafish and Humans Define an Ancient Arsenal of Antiviral Immunity., J. Immunol. 2019 12; 203(12): 3361-3373.
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2019Transcriptional profiling of a laboratory and clinical Mycobacterium tuberculosis strain suggests respiratory poisoning upon exposure to delamanid, Tuberculosis (Edinb) 2019 Jul;117:18-23.
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2017FTR83, a Member of the Large Fish-Specific finTRIM Family, Triggers IFN Pathway and Counters Viral Infection., Front Immunol 2017 ; 8(): 617.
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2017Imaging of viral neuroinvasion in the zebrafish reveals that Sindbis and chikungunya viruses favour different entry routes., Dis Model Mech 2017 07; 10(7): 847-857.
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2015Multilocus sequence analysis of the genus Citrobacter and description of Citrobacter pasteurii sp. nov., Int J Syst Evol Microbiol 2015 May; 65(Pt 5): 1486-1490.
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2015Characterization of samhd1 morphant zebrafish recapitulates features of the human type I interferonopathy Aicardi-Goutières syndrome., J. Immunol. 2015 Mar; 194(6): 2819-25.
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2014Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes., J. Immunol. 2014 May; 192(9): 4328-41.
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