Responsable Pôle Génotypage des Pathogènes
Oxford Nanopore sequencing for detection and surveillance of pathogens
This project intends to share expertise, developments, equipement and bioinformatics tools to apply Oxford Nanopore Technology sequencing to the detection, diagnostic and characterization of pathogens of public health importance. It corresponds to a collaboration […]
Metagenomics for Pathogen Detection
Pathogen detection and characterization methods in public health infectious disease surveillance rely on the identification of agents that are already known to be associated with a particular clinical syndrome. Metagenomics, as an emerging field […]
Summary of the project More than 60% of infectious diseases in humans are caused by pathogens likewise circulating in domestic animals and wildlife. Most of these pathogens are viruses whose genome is an RNA […]
Pôle de Génotypage des Pathogènes (PGP)
The Genotyping of Pathogens Pole, the centre for microbial genomics of the Environment and Infectious Risks Research and Expertise Unit, provides skills with genotyping and genomics technologies for the characterization of sensitive pathogens and/or […]
2016MetaGenSense: A web-application for analysis and exploration of high throughput sequencing metagenomic data, Correia D, Doppelt-Azeroual O, Denis JB et al. MetaGenSense: A web-application for analysis and exploration of high throughput sequencing metagenomic data. F1000Research 2016, 4:86 (doi: 10.12688/f1000research.6139.3) .
2016Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis, Sci Rep 2016;6:30379.
2016Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications, BMC Genomics 2016 Feb;17:118.
2016Mycobacterial pan-genome analysis suggests important role of plasmids in the radiation of type VII secretion systems, Genome Biology and Evolution.
2015Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic, Nature 2015 Aug;524(7563):102-4.
2015Rouxiella chamberiensis gen. nov., sp. nov., a member of the family Enterobacteriaceae isolated from parenteral nutrition bags, Int. J. Syst. Evol. Microbiol. 2015 Jun;65(Pt 6):1812-8.
2014Co-circulation of dengue virus type 3 genotypes in Vientiane capital, Lao PDR, PLoS ONE 2014;9(12):e115569.
2014Three-way interactions between mosquito population, viral strain and temperature underlying chikungunya virus transmission potential, Proc. Biol. Sci. 2014 Oct;281(1792).
2014Emergence of Zaire Ebola virus disease in Guinea, N. Engl. J. Med. 2014 Oct;371(15):1418-25.
2014Chikungunya virus adaptation to a mosquito vector correlates with only few point mutations in the viral envelope glycoprotein, Infect. Genet. Evol. 2014 Jun;24:116-26.
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