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2024Multiple Introductions of Yersinia pestis during Urban Pneumonic Plague Epidemic, Madagascar, 2017., Emerg Infect Dis 2024 Feb; 30(2): 289-298.
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2020Investigation of viral etiology in potentially malignant disorders and oral squamous cell carcinomas in non-smoking, non-drinking patients, PLoS ONE 2020;15(4):e0232138.
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2016MetaGenSense: A web-application for analysis and exploration of high throughput sequencing metagenomic data, Correia D, Doppelt-Azeroual O, Denis JB et al. MetaGenSense: A web-application for analysis and exploration of high throughput sequencing metagenomic data. F1000Research 2016, 4:86 (doi: 10.12688/f1000research.6139.3) .
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2016Plasmodium vivax multidrug resistance-1 gene polymorphism in French Guiana., Malar J 2016 Nov; 15(1): 540.
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2016Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis, Sci Rep 2016;6:30379.
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2016Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications., BMC Genomics 2016 Feb; 17(): 118.
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2016Mycobacterial pan-genome analysis suggests important role of plasmids in the radiation of type VII secretion systems, Genome Biology and Evolution.
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2015Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic, Nature 2015 Aug;524(7563):102-4.
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2014Co-circulation of dengue virus type 3 genotypes in Vientiane capital, Lao PDR, PLoS ONE 2014;9(12):e115569.
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2014Three-way interactions between mosquito population, viral strain and temperature underlying chikungunya virus transmission potential, Proc. Biol. Sci. 2014 Oct;281(1792).
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2014Emergence of Zaire Ebola virus disease in Guinea, N. Engl. J. Med. 2014 Oct;371(15):1418-25.
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2014Chikungunya virus adaptation to a mosquito vector correlates with only few point mutations in the viral envelope glycoprotein, Infect. Genet. Evol. 2014 Jun;24:116-26.
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2013Identification and validation of specific markers of Bacillus anthracis spores by proteomics and genomics approaches, Mol. Cell Proteomics 2014 Mar;13(3):716-32.
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2013Genetic mapping of specific interactions between Aedes aegypti mosquitoes and dengue viruses, PLoS Genet. 2013;9(8):e1003621.
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2013Clinical features and viral diagnosis of two cases of infection with Middle East Respiratory Syndrome coronavirus: a report of nosocomial transmission, Lancet 2013 Jun;381(9885):2265-72.
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2012Resequencing microarray method for molecular diagnosis of human arboviral diseases, J. Clin. Virol. 2013 Mar;56(3):238-43.
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2011Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples., J Clin Microbiol 2011 Sep; 49(9): 3268-75.