Timeline

Dominique Clermont

Research Engineer

01 Mar 2024

publication

Clarification on the implementation of the Nagoya Protocol in France for the access and sharing of benefits arising from the utilization of microbial genetic resources.

01 Jan 2024

publication

The best of both worlds: a proposal for further integration of Candidatus names into the International Code of Nomenclature of Prokaryotes.

15 Dec 2023

publication

Genome sequence-based identification of Enterobacter strains and description of Enterobacter pasteurii sp. nov.

10 Oct 2023

publication

HIV-1 treatment timing shapes the human intestinal memory B-cell repertoire to commensal bacteria.

20 Jun 2023

publication

Paenibacillus plantiphilus sp. nov. from the plant environment of Zea mays

01 Apr 2023

publication

Paenibacillus auburnensis sp. nov. and Paenibacillus pseudetheri sp. nov., isolated from the rhizosphere of Zea mays

01 Nov 2022

publication

Neobacillus rhizosphaerae sp. nov., isolated from the rhizosphere, and reclassification of Bacillus dielmonensis as Neobacillus dielmonensis comb. nov.

01 Oct 2022

publication

Sutcliffiella rhizosphaerae sp. nov. isolated from roots

18 Sep 2022

publication

Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root

01 Sep 2022

publication

Streptomyces durocortorensis sp. nov., isolated from oak rhizosphere.

01 Jul 2022

publication

Bacillus rhizoplanae sp. nov. from maize roots.

01 May 2022

publication

Pseudoneobacillus rhizosphaerae gen. nov., sp. nov., isolated from maize root rhizosphere.

21 Feb 2022

project

ISIDORe – Integrated Services for Infectious Diseases Outbreak Research

27 Jan 2022

publication

Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing.

01 Dec 2021

publication

Leucobacter soli sp. nov., from soil amended with humic acid.

01 Dec 2021

publication

Streptomyces silvae sp. nov., isolated from forest soil.

01 Nov 2021

publication

Devosia equisanguinis sp. nov., isolated from horse blood.

01 Oct 2021

publication

Paenibacillus allorhizosphaerae sp. nov., from soil of the rhizosphere of Zea mays.

09 Jul 2021

news

HoloZcan Kickoff Meeting

01 Apr 2021

publication

Pseudomonas carbonaria sp. nov., isolated from charcoal.

01 Dec 2020

publication

Flavobacterium salmonis sp. nov. isolated from Atlantic salmon (Salmo salar) and formal proposal to reclassify Flavobacterium spartansii as a later heterotypic synonym of Flavobacterium tructae.

30 Nov 2020

publication

Flavobacterium bizetiae sp. nov., isolated from diseased freshwater fish in Canada at the end of the 1970s.

14 Oct 2020

publication

Halomonas lysinitropha sp. nov., a novel halophilic bacterium isolated from a hypersaline wetland.

09 Oct 2020

publication

Flavobacterium panici sp. nov. isolated from the rhizosphere of the switchgrass Panicum virgatum.

01 Oct 2020

publication

Optimization of a Top-Down Proteomics Platform for Closely Related Pathogenic Bacterial Discrimination.

01 Oct 2020

publication

Yersinia artesiana sp. nov., Yersinia proxima sp. nov., Yersinia alsatica sp. nov., Yersina vastinensis sp. nov., Yersinia thracica sp. nov. and Yersinia occitanica sp. nov., isolated from humans and animals.

22 Jul 2020

project

IS_MIRRI21 – Implementation and Sustainability of Microbial Resource Research Infrastructure for the 21st century

01 Mar 2020

publication

Serratia vespertilionis (García-Fraile et al. 2015) is a later heterotypic synonym of Serratia ficaria (Grimont et al. 1981).

01 Mar 2020

publication

Arthrobacter ulcerisalmonis sp. nov., isolated from an ulcer of a farmed Atlantic salmon (Salmo salar), and emended description of the genus Arthrobacter sensu lato.

01 Sep 2019

publication

The use of genomic DNA sequences as type material for valid publication of bacterial species names will have severe implications for clinical microbiology and related disciplines.

12 Aug 2019

publication

DNAshell Protects DNA Stored at Room Temperature for Downstream Next-Generation Sequencing Studies.

01 Jul 2019

publication

Xinfangfangia humi sp. nov., isolated from soil amended with humic acid.

03 Jun 2019

event

ECCO 2019: XXXVIII Annual Meeting of the European Culture Collections’ Organisation

01 Jun 2019

publication

Paracoccus haematequi sp. nov., isolated from horse blood.

01 Jun 2019

publication

Pigmentiphaga humi sp. nov., isolated from soil amended with humic acid.

01 May 2019

publication

Filibacter tadaridae sp. nov., isolated from within a guano pile from a colony of Mexican free-tailed bats Tadarida brasiliensis.

08 Apr 2019

publication

Paracoccus haematequi sp. nov., isolated from horse blood.

20 Mar 2019

publication

Filibacter tadaridae sp. nov., isolated from within a guano pile from a colony of Mexican free-tailed bats Tadarida brasiliensis.

01 Mar 2019

publication

Revising the taxonomy of the Acinetobacter lwoffii group: The description of Acinetobacter pseudolwoffii sp. nov. and emended description of Acinetobacter lwoffii.

12 Oct 2018

publication

Revising the taxonomy of the Acinetobacter lwoffii group: The description of Acinetobacter pseudolwoffii sp. nov. and emended description of Acinetobacter lwoffii

27 Jul 2018

team

Collection of the Institut Pasteur (CIP)

01 Jul 2018

publication

Conservation des bactéries et de leur acide désoxyribonucléique

05 Apr 2018

publication

Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Genomovar III Strain PH-97028 (=CIP 109753).

01 Jan 2018

publication

Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov.

01 Oct 2017

publication

Manual and expert annotation of the nearly complete genome sequence of Staphylococcus sciuri strain ATCC 29059: A reference for the oxidase-positive staphylococci that supports the atypical phenotypic features of the species group.

01 Sep 2017

publication

Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.

24 May 2017

news

Emerging diseases: a highly mutant strain of the Elizabethkingia bacterium caused an outbreak in Wisconsin

24 May 2017

publication

Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain.

01 Jan 2017

publication

Citrobacter europaeus sp. nov., isolated from water and human faecal samples.

03 Oct 2016

publication

Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1

11 Aug 2016

publication

Whole-Genome Sequence of Corynebacterium auriscanis Strain CIP 106629 Isolated from a Dog with Bilateral Otitis from the United Kingdom.

01 Jun 2016

publication

MALDI-TOF MS for Environmental Analysis, Microbiome Research as a Tool for Biological Resource Centres in MALDI-TOF Mass Spectrometry in Microbiology

22 Mar 2016

project

Phylogenomics of Shiga’s epidemic dysentery bacillus (Shigella dysenteriae type 1)

21 Mar 2016

publication

Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

01 Jan 2016

publication

Synthesis and evaluation of original bioisosteres of bacterial type IIA topoisomerases inhibitors

01 Nov 2015

publication

Paenibacillus faecis sp. nov., isolated from human faeces

28 Jul 2015

project

ATPase inhibitors, the cases of human heat shock protein 90 and bacterial type IIA topoisomerases

01 May 2015

publication

Multilocus sequence analysis of the genus Citrobacter and description of Citrobacter pasteurii sp. nov.

28 Jan 2015

publication

Corrigendum: Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline

13 Oct 2014

publication

The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences.

04 Aug 2014

publication

Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline.

01 Jun 2014

publication

Assessment of DNA encapsulation, a new room-temperature DNA storage method.

01 Jan 2014

publication

Identification of 50 class D β-lactamases and 65 Acinetobacter-derived cephalosporinases in Acinetobacter spp.

22 Nov 2013

publication

The intestinal microbiota modulates the anticancer immune effects of cyclophosphamide

22 Aug 2013

publication

Draft Genome Sequence of Lactobacillus pasteurii CRBIP 24.76T.

22 Aug 2013

publication

Draft Genome Sequence of Lactobacillus hominis Strain CRBIP 24.179T, Isolated from Human Intestine.

22 Aug 2013

publication

Draft Genome Sequences of Lactobacillus equicursoris CIP 110162T and Lactobacillus sp. Strain CRBIP 24.137, Isolated from Thoroughbred Racehorse Feces and Human Urine, Respectively.

22 Aug 2013

publication

Draft Genome Sequences of Five Strains of Lactobacillus acidophilus, Strain CIP 76.13T, Isolated from Humans, Strains CIRM-BIA 442 and CIRM-BIA 445, Isolated from Dairy Products, and Strains DSM 20242 and DSM 9126 of Unknown Origin

11 Feb 2013

publication

Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names

01 Jan 2013

publication

Lactobacillus pasteurii sp. nov. and Lactobacillus hominis sp. nov.

01 Nov 2012

publication

Draft genome sequence of Lactobacillus gigeriorum CRBIP 24.85T, isolated from a chicken crop.

01 Sep 2012

publication

The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome.

01 Feb 2012

publication

Lactobacillus gigeriorum sp. nov., isolated from chicken crop.

01 Sep 2010

publication

Listeria rocourtiae sp. nov.

21 Jul 2009

publication

Pseudomonas brassicacearum subsp. neoaurantiaca subsp. nov., orange-pigmented bacteria isolated from soil and the rhizosphere of agricultural plants.

01 May 2009

publication

Microbacterium binotii sp. nov., isolated from human blood

01 May 2008

publication

Bacillus aeolius DSM 15084T (=CIP 107628T) is a strain of Bacillus licheniformis

01 Jan 2006

publication

Characterization of the chromosomal class A beta-lactamase CKO from Citrobacter koseri

01 Jul 2004

publication

Taxonomic characterization of nine strains isolated from clinical and environmental specimens, and proposal of Corynebacterium tuberculostearicum sp. nov.

01 Jan 2003

publication

A sensitive and rapid method to determine the viability of freeze-dried bacterial cells

01 Sep 2001

publication

A little guide for advanced search:

Clarification on the implementation of the Nagoya Protocol in France for the access and sharing of benefits arising from the utilization of microbial genetic resources.

The best of both worlds: a proposal for further integration of Candidatus names into the International Code of Nomenclature of Prokaryotes.

Genome sequence-based identification of Enterobacter strains and description of Enterobacter pasteurii sp. nov.

HIV-1 treatment timing shapes the human intestinal memory B-cell repertoire to commensal bacteria.

Paenibacillus plantiphilus sp. nov. from the plant environment of Zea mays

Paenibacillus auburnensis sp. nov. and Paenibacillus pseudetheri sp. nov., isolated from the rhizosphere of Zea mays

Neobacillus rhizosphaerae sp. nov., isolated from the rhizosphere, and reclassification of Bacillus dielmonensis as Neobacillus dielmonensis comb. nov.

Sutcliffiella rhizosphaerae sp. nov. isolated from roots

Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root

Streptomyces durocortorensis sp. nov., isolated from oak rhizosphere.

Bacillus rhizoplanae sp. nov. from maize roots.

Pseudoneobacillus rhizosphaerae gen. nov., sp. nov., isolated from maize root rhizosphere.

ISIDORe – Integrated Services for Infectious Diseases Outbreak Research

Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing.

Leucobacter soli sp. nov., from soil amended with humic acid.

Streptomyces silvae sp. nov., isolated from forest soil.

Devosia equisanguinis sp. nov., isolated from horse blood.

Paenibacillus allorhizosphaerae sp. nov., from soil of the rhizosphere of Zea mays.

HoloZcan Kickoff Meeting

Pseudomonas carbonaria sp. nov., isolated from charcoal.

Flavobacterium salmonis sp. nov. isolated from Atlantic salmon (Salmo salar) and formal proposal to reclassify Flavobacterium spartansii as a later heterotypic synonym of Flavobacterium tructae.

Flavobacterium bizetiae sp. nov., isolated from diseased freshwater fish in Canada at the end of the 1970s.

Halomonas lysinitropha sp. nov., a novel halophilic bacterium isolated from a hypersaline wetland.

Flavobacterium panici sp. nov. isolated from the rhizosphere of the switchgrass Panicum virgatum.

Optimization of a Top-Down Proteomics Platform for Closely Related Pathogenic Bacterial Discrimination.

Yersinia artesiana sp. nov., Yersinia proxima sp. nov., Yersinia alsatica sp. nov., Yersina vastinensis sp. nov., Yersinia thracica sp. nov. and Yersinia occitanica sp. nov., isolated from humans and animals.

IS_MIRRI21 – Implementation and Sustainability of Microbial Resource Research Infrastructure for the 21st century

Serratia vespertilionis (García-Fraile et al. 2015) is a later heterotypic synonym of Serratia ficaria (Grimont et al. 1981).

Arthrobacter ulcerisalmonis sp. nov., isolated from an ulcer of a farmed Atlantic salmon (Salmo salar), and emended description of the genus Arthrobacter sensu lato.

The use of genomic DNA sequences as type material for valid publication of bacterial species names will have severe implications for clinical microbiology and related disciplines.

DNAshell Protects DNA Stored at Room Temperature for Downstream Next-Generation Sequencing Studies.

Xinfangfangia humi sp. nov., isolated from soil amended with humic acid.

ECCO 2019: XXXVIII Annual Meeting of the European Culture Collections’ Organisation

Paracoccus haematequi sp. nov., isolated from horse blood.

Pigmentiphaga humi sp. nov., isolated from soil amended with humic acid.

Filibacter tadaridae sp. nov., isolated from within a guano pile from a colony of Mexican free-tailed bats Tadarida brasiliensis.

Paracoccus haematequi sp. nov., isolated from horse blood.

Filibacter tadaridae sp. nov., isolated from within a guano pile from a colony of Mexican free-tailed bats Tadarida brasiliensis.

Revising the taxonomy of the Acinetobacter lwoffii group: The description of Acinetobacter pseudolwoffii sp. nov. and emended description of Acinetobacter lwoffii.

Revising the taxonomy of the Acinetobacter lwoffii group: The description of Acinetobacter pseudolwoffii sp. nov. and emended description of Acinetobacter lwoffii

Collection of the Institut Pasteur (CIP)

Conservation des bactéries et de leur acide désoxyribonucléique

Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Genomovar III Strain PH-97028 (=CIP 109753).

Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov.

Manual and expert annotation of the nearly complete genome sequence of Staphylococcus sciuri strain ATCC 29059: A reference for the oxidase-positive staphylococci that supports the atypical phenotypic features of the species group.

Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.

Emerging diseases: a highly mutant strain of the Elizabethkingia bacterium caused an outbreak in Wisconsin

Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain.

Citrobacter europaeus sp. nov., isolated from water and human faecal samples.

Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1

Whole-Genome Sequence of Corynebacterium auriscanis Strain CIP 106629 Isolated from a Dog with Bilateral Otitis from the United Kingdom.

MALDI-TOF MS for Environmental Analysis, Microbiome Research as a Tool for Biological Resource Centres in MALDI-TOF Mass Spectrometry in Microbiology

Phylogenomics of Shiga’s epidemic dysentery bacillus (Shigella dysenteriae type 1)

Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

Synthesis and evaluation of original bioisosteres of bacterial type IIA topoisomerases inhibitors

Paenibacillus faecis sp. nov., isolated from human faeces

ATPase inhibitors, the cases of human heat shock protein 90 and bacterial type IIA topoisomerases

Multilocus sequence analysis of the genus Citrobacter and description of Citrobacter pasteurii sp. nov.

Corrigendum: Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline

The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences.

Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline.

Assessment of DNA encapsulation, a new room-temperature DNA storage method.

Identification of 50 class D β-lactamases and 65 Acinetobacter-derived cephalosporinases in Acinetobacter spp.

The intestinal microbiota modulates the anticancer immune effects of cyclophosphamide

Draft Genome Sequence of Lactobacillus pasteurii CRBIP 24.76T.

Draft Genome Sequence of Lactobacillus hominis Strain CRBIP 24.179T, Isolated from Human Intestine.

Draft Genome Sequences of Lactobacillus equicursoris CIP 110162T and Lactobacillus sp. Strain CRBIP 24.137, Isolated from Thoroughbred Racehorse Feces and Human Urine, Respectively.

Draft Genome Sequences of Five Strains of Lactobacillus acidophilus, Strain CIP 76.13T, Isolated from Humans, Strains CIRM-BIA 442 and CIRM-BIA 445, Isolated from Dairy Products, and Strains DSM 20242 and DSM 9126 of Unknown Origin

Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names

Lactobacillus pasteurii sp. nov. and Lactobacillus hominis sp. nov.

Draft genome sequence of Lactobacillus gigeriorum CRBIP 24.85T, isolated from a chicken crop.

The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome.

Lactobacillus gigeriorum sp. nov., isolated from chicken crop.

Listeria rocourtiae sp. nov.

Pseudomonas brassicacearum subsp. neoaurantiaca subsp. nov., orange-pigmented bacteria isolated from soil and the rhizosphere of agricultural plants.

Microbacterium binotii sp. nov., isolated from human blood

Bacillus aeolius DSM 15084T (=CIP 107628T) is a strain of Bacillus licheniformis

Characterization of the chromosomal class A beta-lactamase CKO from Citrobacter koseri

Taxonomic characterization of nine strains isolated from clinical and environmental specimens, and proposal of Corynebacterium tuberculostearicum sp. nov.