Timeline

Marie Touchon

page

12 Mar 2024

publication

Perturbation and resilience of the gut microbiome up to 3 months after β-lactams exposure in healthy volunteers suggest an important role of microbial β-lactamases.

06 Nov 2023

news

Chance Favors the Prepared Genomes: Horizontal Transfer Shapes the Emergence of Antibiotic Resistance Mutations in Core Genes.

04 Oct 2023

publication

Chance Favors the Prepared Genomes: Horizontal Transfer Shapes the Emergence of Antibiotic Resistance Mutations in Core Genes.

22 Apr 2021

software

CRISPRCasFinder

22 Apr 2021

news

Bacteria have numerous phage–plasmids with conserved phage and variable plasmid genes

18 Mar 2021

publication

Bacteria have numerous distinctive groups of phage-plasmids with conserved phage and variable plasmid gene repertoires.

11 Feb 2021

publication

Causes and consequences of bacteriophage diversification via genetic exchanges across lifestyles and bacterial taxa.

10 Feb 2020

news

Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements

24 Jan 2020

publication

Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements

13 May 2019

publication

A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria

07 Jan 2019

news

Genetic exchanges are more frequent in bacteria encoding capsules

21 Dec 2018

publication

Genetic exchanges are more frequent in bacteria encoding capsules

02 Jul 2018

publication

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

12 Jun 2018

news

Parallels between natural and experimental evolution of symbiosis

11 Jun 2018

publication

Parallels between experimental and natural evolution of legume symbionts

12 Dec 2017

publication

Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria

11 Oct 2017

news

The treasure troves of bacterial genetic diversity

10 Oct 2017

publication

The chromosomal organization of horizontal gene transfer in bacteria

02 Oct 2017

publication

Metagenomic assessment of the interplay between the environment and the genetic diversification of Acinetobacter

06 Sep 2017

publication

Integrative and conjugative elements and their hosts: composition, distribution and organization

29 Aug 2017

publication

A widespread family of polymorphic toxins encoded by temperate phages

24 Jul 2017

publication

Abundance and co-occurrence of extracellular capsules increase environmental breadth: Implications for the emergence of pathogens

24 May 2017

news

Emerging diseases: a highly mutant strain of the Elizabethkingia bacterium caused an outbreak in Wisconsin

10 Apr 2017

publication

Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer

10 Oct 2016

news

A population biology study of Listeria ushers in a new era in listeriosis surveillance

11 Sep 2016

news

Restriction modification systems as regulators of gene transfer

27 Jul 2016

publication

Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis

02 May 2016

publication

Regulation of genetic flux between bacteria by restriction-modification systems.

29 Apr 2016

publication

Identification and analysis of integrons and cassette arrays in bacterial genomes.

25 Mar 2016

publication

Genetic and life-history traits associated with the distribution of prophages in bacteria.

16 Mar 2016

publication

Identification of protein secretion systems in bacterial genomes

01 Mar 2016

publication

Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity.

01 Feb 2016

news

Listeria: identification of hypervirulent strains with placental and cerebral tropism

04 Jan 2016

publication

Coevolution of the Organization and Structure of Prokaryotic Genomes.

08 Oct 2015

tool

TXSScan – models and profiles for protein secretion systems

06 Oct 2015

news

GEM paper among the all-time top10 of PLoS Genetics

10 Sep 2015

project

ANR Magisbac : Genesis and Maintenance of Bacterial Secondary Chromosomes

10 Sep 2015

project

ERC-2011-StG EVOMOBILOME

11 May 2015

team

A little guide for advanced search:

Perturbation and resilience of the gut microbiome up to 3 months after β-lactams exposure in healthy volunteers suggest an important role of microbial β-lactamases.

Chance Favors the Prepared Genomes: Horizontal Transfer Shapes the Emergence of Antibiotic Resistance Mutations in Core Genes.

Chance Favors the Prepared Genomes: Horizontal Transfer Shapes the Emergence of Antibiotic Resistance Mutations in Core Genes.

CRISPRCasFinder

Bacteria have numerous phage–plasmids with conserved phage and variable plasmid genes

Bacteria have numerous distinctive groups of phage-plasmids with conserved phage and variable plasmid gene repertoires.

Causes and consequences of bacteriophage diversification via genetic exchanges across lifestyles and bacterial taxa.

Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements

Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements

A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria

Genetic exchanges are more frequent in bacteria encoding capsules

Genetic exchanges are more frequent in bacteria encoding capsules

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

Parallels between natural and experimental evolution of symbiosis

Parallels between experimental and natural evolution of legume symbionts

Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria

The treasure troves of bacterial genetic diversity

The chromosomal organization of horizontal gene transfer in bacteria

Metagenomic assessment of the interplay between the environment and the genetic diversification of Acinetobacter

Integrative and conjugative elements and their hosts: composition, distribution and organization

A widespread family of polymorphic toxins encoded by temperate phages

Abundance and co-occurrence of extracellular capsules increase environmental breadth: Implications for the emergence of pathogens

Emerging diseases: a highly mutant strain of the Elizabethkingia bacterium caused an outbreak in Wisconsin

Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer

A population biology study of Listeria ushers in a new era in listeriosis surveillance

Restriction modification systems as regulators of gene transfer

Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis

Regulation of genetic flux between bacteria by restriction-modification systems.

Identification and analysis of integrons and cassette arrays in bacterial genomes.

Genetic and life-history traits associated with the distribution of prophages in bacteria.

Identification of protein secretion systems in bacterial genomes

Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity.

Listeria: identification of hypervirulent strains with placental and cerebral tropism

Coevolution of the Organization and Structure of Prokaryotic Genomes.

TXSScan – models and profiles for protein secretion systems

GEM paper among the all-time top10 of PLoS Genetics

ANR Magisbac : Genesis and Maintenance of Bacterial Secondary Chromosomes

ERC-2011-StG EVOMOBILOME

Microbial Evolutionary Genomics