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member
team
department
center
program_project
nrc
whocc
project
software
tool
patent

Keywords

Positions

Administrative Staff
Assistant Professor
Associate Professor
Clinical Research Assistant
Clinical Research Nurse
Clinician Researcher
Department Manager
Dual-education Student
Full Professor
Honorary Professor
Lab assistant
Master Student
MD-PhD Student
Medical Staff
Non-permanent Researcher
Nursing Staff
Permanent Researcher
Pharmacist
PhD Student
Physician
Post-doc
Prize
Project Manager
Research Associate
Research Engineer
Retired scientist
Technician
Undergraduate Student
Veterinary
Visiting Scientist

Appointments

Deputy Director of Center
Deputy Director of Department
Deputy Director of National Reference Center
Deputy Head of Facility
Director of Center
Director of Department
Director of Institute
Director of National Reference Center
Group Leader
Head of Facility
Head of Operations
Head of Structure
Honorary President of the Departement
Labex Coordinator

Search

Queuine Is a Nutritional Regulator of Entamoeba histolytica Response to Oxidative Stress and a Virulence Attenuator.

mBio

Nagaraja S, Cai MW, Sun J, Varet H, Sarid L, Trebicz-Geffen M, Shaulov Y, Mazumdar M, Legendre R, Coppée JY, Begley TJ, Dedon PC, Gourinath S, Guillen N, Saito-Nakano Y, Shimokawa C, Hisaeda H, Ankri S,

BioFlow-Insight: facilitating reuse of Nextflow workflows with structure reconstruction and visualization.

NAR genomics and bioinformatics

Marchment G, Brancotte B, Schmit M, Lemoine F, Cohen-Boulakia S

Author Correction: Emergence and clonal expansion of in vitro artemisinin-resistant Plasmodium falciparum kelch13 R561H mutant parasites in Rwanda.

Nature medicine

Uwimana A, Legrand E, Stokes BH, Ndikumana JM, Warsame M, Umulisa N, Ngamije D, Munyaneza T, Mazarati JB, Munguti K, Campagne P, Criscuolo A, Ariey F, Murindahabi M, Ringwald P, Fidock DA, Mbituyumuremyi A, Menard D,

Proteogenomic Characterization of Bladder Cancer Reveals Sensitivity to Apoptosis Induced by Tumor Necrosis Factor-related Apoptosis-inducing Ligand in FGFR3-mutated Tumors.

European urology

Groeneveld CS, Sanchez-Quiles V, Dufour F, Shi M, Dingli F, Nicolle R, Chapeaublanc E, Poullet P, Jeffery D, Krucker C, Maillé P, Vacherot F, Vordos D, Benhamou S, Lebret T, Micheau O, Zinovyev A, Loew D, Allory Y, de Reyniès A, Bernard-Pierrot I, Radvanyi F

Germline inherited small RNAs facilitate the clearance of untranslated maternal mRNAs in C. elegans embryos.

Nature communications

Quarato P, Singh M, Cornes E, Li B, Bourdon L, Mueller F, Didier C, Cecere G,

Arthrobacter ulcerisalmonis sp. nov., isolated from an ulcer of a farmed Atlantic salmon (Salmo salar), and emended description of the genus Arthrobacter sensu lato.

International journal of systematic and evolutionary microbiology

Kämpfer P, Busse HJ, Schumann P, Criscuolo A, Clermont D, Irgang R, Poblete-Morales M, Glaeser SP, Avendaño-Herrera R,

MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets.

Bioinformatics (Oxford, England)

Hourdel V, Volant S, O'Brien DP, Chenal A, Chamot-Rooke J, Dillies MA, Brier S

Experimental evolution links post-transcriptional regulation to Leishmania fitness gain.

PLoS pathogens

Piel L, Rajan KS, Bussotti G, Varet H, Legendre R, Proux C, Douché T, Giai-Gianetto Q, Chaze T, Cokelaer T, Vojtkova B, Gordon-Bar N, Doniger T, Cohen-Chalamish S, Rengaraj P, Besse C, Boland A, Sadlova J, Deleuze JF, Matondo M, Unger R, Volf P, Michaeli S, Pescher P, Späth GF

Mobility evaluation by GPS tracking in a rural, low-income population in Cambodia.

PloS one

Pepey A, Obadia T, Kim S, Sovannaroth S, Mueller I, Witkowski B, Vantaux A, Souris M,

Accurate profiling of microbial communities for shotgun metagenomic sequencing with Meteor2.

Microbiome

Ghozlane A, Thirion F, Plaza Oñate F, Gauthier F, Le Chatelier E, Annamalé A, Almeida M, Ehrlich SD, Pons N

Impact of temperature on dengue and chikungunya transmission by the mosquito Aedes albopictus.

Scientific reports

Mercier A, Obadia T, Carraretto D, Velo E, Gabiane G, Bino S, Vazeille M, Gasperi G, Dauga C, Malacrida AR, Reiter P, Failloux AB,

Distinct systemic and mucosal immune responses during acute SARS-CoV-2 infection.

Nature immunology

Smith N, Goncalves P, Charbit B, Grzelak L, Beretta M, Planchais C, Bruel T, Rouilly V, Bondet V, Hadjadj J, Yatim N, Pere H, Merkling SH, Ghozlane A, Kernéis S, Rieux-Laucat F, Terrier B, Schwartz O, Mouquet H, Duffy D, Di Santo JP,

Cdc48-associated complex bound to 60S particles is required for the clearance of aberrant translation products

Proceedings of the National Academy of Sciences of the United States of America

Defenouillère Q, Yao Y, Mouaikel J, Namane A, Galopier A, Decourty L, Doyen A, Malabat C, Saveanu C, Jacquier A, Fromont-Racine M

The oxidative stress response of pathogenic Leptospira is controlled by two peroxide stress regulators which putatively cooperate in controlling virulence.

PLoS pathogens

Zavala-Alvarado C, G Huete S, Vincent AT, Sismeiro O, Legendre R, Varet H, Bussotti G, Lorioux C, Lechat P, Coppée JY, Veyrier FJ, Picardeau M, Benaroudj N

The CovR regulatory network drives the evolution of Group B Streptococcus virulence.

PLoS genetics

Mazzuoli MV, Daunesse M, Varet H, Rosinski-Chupin I, Legendre R, Sismeiro O, Gominet M, Kaminski PA, Glaser P, Chica C, Trieu-Cuot P, Firon A,

Mosaicism and prenatal diagnosis options: insights from retinoblastoma

European journal of human genetics : EJHG

Dehainault C, Golmard L, Millot GA, Charpin A, Laugé A, Tarabeux J, Aerts I, Cassoux N, Stoppa-Lyonnet D, Gauthier-Villars M, Houdayer C

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Determination of differentially regulated proteins upon proteasome inhibition in AML cell lines by the combination of large-scale and targeted quantitative proteomics

Targeted Intron Retention and Excision for Rapid Gene Regulation in Response to Neuronal Activity

Calls

Application as permanent staff scientist at Institut Pasteur

Mid-career Group Leader position in AI in genomics at Institut Pasteur, Paris

Creation of new junior research groups at the Institut Pasteur – Call for applications 2026

Events

6 Upcoming Events

Calendar

Today

17 Dec 2025

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Soutenance de thèse de Doctorat / PhD Thesis Defense – Jean Randrianaly

Pole STATS – biostatistics

Bioinformatics and Biostatistics HUB

Pole FUNOMICA – FUNctional and OMICs Analysis

Rachel Legendre

Jean-Yves Coppee

Trainings & Tools: How to prepare for disasters

Pole STATS – biostatistics

Bioinformatics and Biostatistics HUB

Pole FUNOMICA – FUNctional and OMICs Analysis

Rachel Legendre

Jean-Yves Coppee

JOURNÉE DE LA RECHERCHE TRANSLATIONNELLE “Organoids : from stem cells to diseases modeling…”

Pole STATS – biostatistics

Bioinformatics and Biostatistics HUB

Pole FUNOMICA – FUNctional and OMICs Analysis

Rachel Legendre

Jean-Yves Coppee

Symposium : Spencer Shorte, remembering a visionary mind – Yasmine Belkaid, Michael Nilges, Kelly Rogers, Geert Van Minnebruggen, Ralph Palmisano, Jost Enninga, Pr. Jason Swedlow, Ivo Gomperts Boneca, Yara Reis, Rogerio Amino, Pr. Friedrich Frischknecht, Jean-Yves Tinevez, Mathieu Marchand, Soojin Jang, David Shum, Nathalie Aulner, Florian Muller

Pole STATS – biostatistics

Bioinformatics and Biostatistics HUB

Pole FUNOMICA – FUNctional and OMICs Analysis

Rachel Legendre

Jean-Yves Coppee

ReCombinaisons

Pole STATS – biostatistics

Bioinformatics and Biostatistics HUB

Pole FUNOMICA – FUNctional and OMICs Analysis

Rachel Legendre

Jean-Yves Coppee

Grand challenges in vector-borne diseases

Pole STATS – biostatistics

Bioinformatics and Biostatistics HUB

Pole FUNOMICA – FUNctional and OMICs Analysis

Rachel Legendre

Jean-Yves Coppee

Jobs

Interaction between NOD2 and Faecalibacterium in health and Crohn’s disease

Biology and Genetics of Bacterial Cell Wall

2-year Postdoc position on the cellular biology of human nicotinic receptors associated with lung cancer

Signaling and receptors dynamics

Job: Master Student

M2 Internship Proposal for “Strategies in small-scale bio-inspired circuits”

Decision and Bayesian Computation – Epiméthée

The Institut Pasteur is looking for a Director of Technology

Network

Publications

Frontiers in immunology

Non-human Primate Determinants of Natural Killer Cells in Tissues at Steady-State and During Simian Immunodeficiency Virus Infection.

Developmental cell

piRNAs initiate transcriptional silencing of spermatogenic genes during C. elegans germline development.

Science advances

Immune checkpoint inhibitors increase T cell immunity during SARS-CoV-2 infection.

Nature communications

A conserved NR5A1-responsive enhancer regulates SRY in testis-determination.

News

Symposium : Spencer Shorte, remembering a visionary mind

Ongoing Training in Medical Mycology in Cape Town (Africa) by team members from the CNRMA

Guilhem, Alexandre, Fanny & Sarah have been interviewed for “La Lettre de l&#...

PhD Thesis Defense / Soutenance de thèse de doctorat du docteur Marie Robert