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  • Technician
  • Undergraduate Student
  • Veterinary
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  • Director of Center
  • Director of Department
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Scientific Fields
Diseases
Organisms
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Technique

Published in Bioinformatics - 19 Jan 2018

Dimitri Desvillechabrol, Rachel Legendre, Claire Rioualen, Christiane Bouchier, Jacques van Helden, Sean Kennedy and Thomas Cokelaer

Link to Pubmed [PMID] – 29361152

https://doi.org/10.1093/bioinformatics/bty034

Summary

We designed a PyQt graphical user interface – Sequanix – aimed at democratizing the use of Snakemake pipelines in the NGS space and beyond. By default, Sequanix includes Sequana NGS pipelines (Snakemake format) (http://sequana.readthedocs.io), and is also capable of loading any external Snakemake pipeline. New users can easily, visually, edit configuration files of expert-validated pipelines and can interactively execute these production-ready workflows. Sequanix will be useful to both Snakemake developers in exposing their pipelines and to a wide audience of users.

Availability

Source on http://github.com/sequana/sequana, bio-containers on http://bioconda.github.io and Singularity hub (http://singularity-hug.org).