• 2024
  Rémi Sieskind, Sophia Missoury, Clément Madru, Isciane Commenge, Germain Niogret, Marcel Hollenstein, Yannick Rondelez, Ludovic Sauguet, Ahmed Haouz, Pierre Legrand, Marc Delarue*, Crystal structures of monomeric BsmI restriction endonuclease reveal a coordinated action of its two distinct active sites to sequentially cleave the two DNA strands, Communications Biology.
• 2024
  Nandan Haloi, Emelia Karlsson, Marc Delarue, Rebecca J Howard, Erik Lindahl, Discovering cryptic pocket opening and binding of a stimulant derivative in a vestibular site of the 5-HT3A receptor, 2024.
• 2024
  Nilesh B Karalkar, Tatiana Kent, Taylor Tredinnick, Leonardo Betancurt-Anzola, Marc Delarue, Richard Pomerantz, Steven A Benner, Template-Independent Enzymatic RNA Synthesis, 2024.
• 2024
  Patrice Koehl, Rafael Navaza, Mustafa Tekpinar, Marc Delarue, MinActionPath2: path generation between different conformations of large macromolecular assemblies by action minimization, Nucleic Acids Research, 2024, pp.gkae421. ⟨10.1093/nar/gkae421⟩.
• 2024
  Emelia Karlsson, Olivia Andén, Chen Fan, Zaineb Fourati, Ahmed Haouz, Yuxuan Zhuang, Rebecca J Howard, Marc Delarue, Erik Lindahl, Vestibular Modulation by Stimulant Derivatives in a Pentameric Ligand-Gated Ion Channel, 2024.
• 2023
  Betancurt-Anzola L, Martínez-Carranza M, Delarue M, Zatopek KM, Gardner AF, Sauguet L, Molecular basis for proofreading by the unique exonuclease domain of Family-D DNA polymerases., Nat Commun 2023 Dec; 14(1): 8306.
• 2023
  Hsieh YC , Delarue M, Orland H, Koehl P, Analyzing the Geometry and Dynamics of Viral Structures: A Review of Computational Approaches Based on Alpha Shape Theory, Normal Mode Analysis, and Poisson–Boltzmann Theories, Viruses 2023, 15, 1366.
• 2023
  Madru C, Martínez-Carranza M, Laurent S, Alberti AC, Chevreuil M, Raynal B, Haouz A, Le Meur RA, Delarue M, Henneke G, Flament D, Krupovic M, Legrand P, Sauguet L, DNA-binding mechanism and evolution of replication protein A., Nat Commun 2023 Apr; 14(1): 2326.
• 2023
  Czernecki D, Nourisson A, Legrand P, Delarue M, Reclassification of family A DNA polymerases reveals novel functional subfamilies and distinctive structural features, Nucleic Acids Research 2023 May 22;51(9):4488-4507.
• 2023
  Koehl P, Delarue M, Orland H, Computing the Gromov-Wasserstein Distance between Two Surface Meshes Using Optimal Transport, Algorithms 2023, 16, 131.
• 2021
  Czernecki D, Hu H, Romoli F, Delarue M, Structural dynamics and determinants of 2-aminoadenine specificity in DNA polymerase DpoZ of vibriophage ϕVC8., Nucleic Acids Res 2021 Nov; 49(20): 11974-11985.
• 2021
  Tekpinar M, Neron B, Delarue M, Extracting Dynamical Correlations and Identifying Key Residues for Allosteric Communication in Proteins by correlationplus., J Chem Inf Model 2021 Oct; 61(10): 4832-4838.
• 2021
  Koehl P, Orland H, Delarue M, Parameterizing elastic network models to capture the dynamics of proteins., J Comput Chem. 2021 Sep 5;42(23):1643-1661..
• 2021
  Czernecki D, Bonhomme F, Kaminski PA, Delarue M , Characterization of a triad of genes in cyanophage S-2L sufficient to replace adenine by 2-aminoadenine in bacterial DNA., Nat Commun 2021 08; 12(1): 4710.
• 2021
  Czernecki D., Bonhomme F., Kaminski PA. and Delarue M., Characterization of a triad of genes in cyanophage S-2Lsufficient to replace adenine by 2-aminoadenine in bacterial DNA, NATURE.
• 2021
  Koehl P, Delarue M, Orland H, Physics approach to the variable-mass optimal-transport problem, Phys Rev E . 2021 Jan;103(1-1):012113 .
• 2021
  Koehl P, Delarue M, Orland H., Simultaneous Identification of Multiple Binding Sites in Proteins: A Statistical Mechanics Approach., J Phys Chem B. 2021 May 20;125(19):5052-5067..
• 2021
  Czernecki D, Legrand P, Tekpinar M, Rosario S, Kaminski PA, Delarue M, How cyanophage S-2L rejects adenine and incorporates 2-aminoadenine to saturate hydrogen bonding in its DNA., Nat Commun 2021 04; 12(1): 2420.
• 2021
  Madru C, Tekpinar AD, Rosario S, Czernecki D, Brûlé S, Sauguet L, Delarue M, Fast and efficient purification of SARS-CoV-2 RNA dependent RNA polymerase complex expressed in Escherichia coli., PLoS One 2021 ; 16(4): e0250610.
• 2020
  Samson C, Legrand P, Tekpinar M,Rozenski J,Abramov M, Holliger P, Pinheiro VB, Herdewijn P, Delarue M, Structural Studies of HNA Substrate Specificity in Mutants of an Archaeal DNA Polymerase Obtained by Directed Evolution, Biomolecules . 2020 Dec 8;10(12):1647. doi: 10.3390/biom10121647..
• 2020
  Fourati Z, Sauguet L, Delarue M, Structural evidence for the binding of monocarboxylates and dicarboxylates at pharmacologically relevant extracellular sites of a pentameric ligand-gated ion channel., Acta Crystallogr D Struct Biol 2020 Jul; 76(Pt 7): 668-675.
• 2020
  Hu H, Howard RJ, Bastolla U, Lindahl E, Delarue M, Structural basis for allosteric transitions of a multidomain pentameric ligand-gated ion channel., Proc. Natl. Acad. Sci. U.S.A. 2020 Jun; 117(24): 13437-13446.
• 2020
  Madru C, Henneke G, Raia P, Hugonneau-Beaufet I, Pehau-Arnaudet G, England P, Lindahl E, Delarue M, Carroni M, Sauguet L, , Structural basis for the increased processivity of D-family DNA polymerases in complex with PCNA., Nat Commun 2020 03; 11(1): 1591.
• 2019
  Koehl P, Delarue M, Orland H, Statistical Physics Approach to the Optimal Transport Problem., Phys. Rev. Lett. 2019 Jul; 123(4): 040603.
• 2019
  Loc'h J, Gerodimos CA, Rosario S, Tekpinar M, Lieber MR, Delarue M, Structural evidence for an “in trans” base selection mechanism involving Loop1 in polymerase μ at an NHEJ double-strand break junction, J. Biol. Chem. 2019 Jul;294(27):10579-10595.
• 2019
  Randrianjatovo-Gbalou I, Delarue M, Rapid enzymatic synthesis of long RNA polymers: A simple protocol to generate RNA libraries with random sequences, Methods 2019 May;161:83-90.
• 2019
  Raia P, Delarue M, Sauguet L, , An updated structural classification of replicative DNA polymerases., Biochem Soc Trans 2019 02; 47(1): 239-249.
• 2019
  Raia P, Carroni M, Henry E, Pehau-Arnaudet G, Brûlé S,Béguin P, Henneke G, Lindahl E, Delarue M, Sauguet L, Structure of the DP1–DP2 PolD complex bound with DNA and its implications for the evolutionary history of DNA and RNA polymerases, PLOS Biology 17, e3000122 .
• 2019
  Raia P, Carroni M, Henry E, Pehau-Arnaudet G, Brûlé S, Béguin P, Henneke G, Lindahl E, Delarue M, Sauguet L, , Structure of the DP1-DP2 PolD complex bound with DNA and its implications for the evolutionary history of DNA and RNA polymerases., PLoS Biol 2019 01; 17(1): e3000122.
• 2018
  Koehl P, Orland H, Delarue M, Numerical Encodings of Amino Acids in Multivariate Gaussian Modeling of Protein Multiple Sequence Alignments, Molecules 2018 Dec;24(1).
• 2018
  Hu H, Ataka K, Menny A, Fourati Z, Sauguet L, Corringer PJ, Koehl P, Heberle J, Delarue M, Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel, Proc. Natl. Acad. Sci. U.S.A. 2018 12;115(52):E12172-E12181.
• 2018
  Koehl P, Delarue M, Coarse-grained dynamics of supramolecules: Conformational changes in outer shells of Dengue viruses, Prog. Biophys. Mol. Biol. 2019 May;143:20-37.
• 2018
  Delarue M, Koehl P, Combined approaches from physics, statistics, and computer science for protein structure prediction: (unity is strength)?, F1000Res 2018;7.
• 2018
  Randrianjatovo-Gbalou I, Rosario S, Sismeiro O, Varet H, Legendre R, Coppée JY, Huteau V, Pochet S, Delarue M, Enzymatic synthesis of random sequences of RNA and RNA analogues by DNA polymerase theta mutants for the generation of aptamer libraries, Nucleic Acids Res. 2018 07;46(12):6271-6284.
• 2018
  Fourati Z, Howard RJ, Heusser SA, Hu H, Ruza RR, Sauguet L, Lindahl E, Delarue M, Structural Basis for a Bimodal Allosteric Mechanism of General Anesthetic Modulation in Pentameric Ligand-Gated Ion Channels, Cell Rep 2018 04;23(4):993-1004.
• 2018
  Loc'h J, Delarue M, Terminal deoxynucleotidyltransferase: the story of an untemplated DNA polymerase capable of DNA bridging and templated synthesis across strands, Curr. Opin. Struct. Biol. 2018 12;53:22-31.
• 2018
  Hu H, Nemecz Á, Van Renterghem C, Fourati Z, Sauguet L, Corringer PJ, Delarue M, Crystal structures of a pentameric ion channel gated by alkaline pH show a widely open pore and identify a cavity for modulation, Proc. Natl. Acad. Sci. U.S.A. 2018 04;115(17):E3959-E3968.
• 2018
  Abdollahi N, Albani A, Anthony E, Baud A, Cardon M, Clerc R, Czernecki D, Conte R, David L, Delaune A, Djerroud S, Fourgoux P, Guiglielmoni N, Laurentie J, Lehmann N, Lochard C, Montagne R, Myrodia V, Opuu V, Parey E, Polit L, Privé S, Quignot C, Ruiz-Cuevas M, Sissoko M, Sompairac N, Vallerix A, Verrecchia V, Delarue M, Guérois R, Ponty Y, Sacquin-Mora S, Carbone A, Froidevaux C, Le Crom S, Lespinet O, Weigt M, Abboud S, Bernardes J, Bouvier G, Dequeker C, Ferré A, Fuchs P, Lelandais G, Poulain P, Richard H, Schweke H, Laine E, Lopes A, Meet-U: Educating through research immersion, PLoS Comput. Biol. 2018 03;14(3):e1005992.
• 2017
  Nemecz Á, Hu H, Fourati Z, Van Renterghem C, Delarue M, Corringer PJ, Full mutational mapping of titratable residues helps to identify proton-sensors involved in the control of channel gating in the Gloeobacter violaceus pentameric ligand-gated ion channel, PLoS Biol. 2017 12;15(12):e2004470.
• 2017
  Delarue M, Koehl P, Orland H, Ab initio sampling of transition paths by conditioned Langevin dynamics, J Chem Phys 2017 Oct;147(15):152703.
• 2017
  Lev B, Murail S, Poitevin F, Cromer BA, Baaden M, Delarue M, Allen TW, String method solution of the gating pathways for a pentameric ligand-gated ion channel, Proc. Natl. Acad. Sci. U.S.A. 2017 05;114(21):E4158-E4167.
• 2017
  Menny A, Lefebvre SN, Schmidpeter PA, Drège E, Fourati Z, Delarue M, Edelstein SJ, Nimigean CM, Joseph D, Corringer PJ, Identification of a pre-active conformation of a pentameric channel receptor, Elife 2017 03;6.
• 2017
  Koehl P, Poitevin F, Navaza R, Delarue M, The Renormalization Group and Its Applications to Generating Coarse-Grained Models of Large Biological Molecular Systems, J Chem Theory Comput 2017 Mar;13(3):1424-1438.
• 2016
  Hsieh YC, Poitevin F, Delarue M, Koehl P, Comparative Normal Mode Analysis of the Dynamics of DENV and ZIKV Capsids, Front Mol Biosci 2016;3:85.
• 2016
  Fourati Z, Ruza RR, Laverty D, Drège E, Delarue-Cochin S, Joseph D, Koehl P, Smart T, Delarue M, Barbiturates Bind in the GLIC Ion Channel Pore and Cause Inhibition by Stabilizing a Closed State, J. Biol. Chem. 2017 02;292(5):1550-1558.
• 2016
  Luckau S, Wehrs TP, Brandau S, Horn PA, Lindemann M, Vaccination Against Human Papilloma Viruses Leads to a Favorable Cytokine Profile of Specific T Cells, J. Immunother. 2016 10;39(8):316-20.
• 2016
  Sauguet L, Raia P, Henneke G, Delarue M., Shared active site architecture between archaeal PolD and multi-subunit RNA polymerases revealed by X-ray crystallography., Nat Commun. 2016 Aug 22;7:12227.
• 2016
  Loc'h J, Rosario S, Delarue M, Structural Basis for a New Templated Activity by Terminal Deoxynucleotidyl Transferase: Implications for V(D)J Recombination, Structure 2016 09;24(9):1452-63.
• 2016
  Poitevin F, Delarue M, Orland H, Beyond Poisson-Boltzmann: Numerical Sampling of Charge Density Fluctuations, J Phys Chem B 2016 07;120(26):6270-7.
• 2016
  Laurent B, Murail S, Shahsavar A, Sauguet L, Delarue M, Baaden M, Sites of Anesthetic Inhibitory Action on a Cationic Ligand-Gated Ion Channel, Structure 2016 Apr;24(4):595-605.
• 2016
  Sauguet L, Fourati Z, Prangé T, Delarue M, Colloc'h N, Structural Basis for Xenon Inhibition in a Cationic Pentameric Ligand-Gated Ion Channel, PLoS ONE 2016;11(2):e0149795.
• 2016
  Sauguet L, Raia P, Henneke G, Delarue M, , Shared active site architecture between archaeal PolD and multi-subunit RNA polymerases revealed by X-ray crystallography., Nat Commun 2016 ; 7(): 12227.
• 2015
  Gouge J, Rosario S, Romain F,Poitevin F, Béguin P, Delarue M, Structural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair, EMBO Journal, 2015, 34 (8), pp.1126-1142. ⟨10.15252/embj.201489643⟩.
• 2015
  Moraga-Cid G, Sauguet L, Huon C, Malherbe L, Girard-Blanc C, Petres S, Murail S, Taly A, Baaden M, Delarue M, Corringer PJ, , Allosteric and hyperekplexic mutant phenotypes investigated on an α1 glycine receptor transmembrane structure., Proc Natl Acad Sci U S A 2015 Mar; 112(9): 2865-70.
• 2015
  Fourati Z, Sauguet L, Delarue M, Genuine open form of the pentameric ligand-gated ion channel GLIC, Acta Crystallogr. D Biol. Crystallogr. 2015 Mar;71(Pt 3):454-60.
• 2014
  Sauguet L, Shahsavar A, Delarue M, Crystallographic studies of pharmacological sites in pentameric ligand-gated ion channels, Biochim. Biophys. Acta 2015 Mar;1850(3):511-23.
• 2014
  Weinreb V, Li L, Chandrasekaran SN, Koehl P, Delarue M, Carter CW, Enhanced amino acid selection in fully evolved tryptophanyl-tRNA synthetase, relative to its urzyme, requires domain motion sensed by the D1 switch, a remote dynamic packing motif, J. Biol. Chem. 2014 Feb;289(7):4367-76.
• 2013
  Sauguet L, Shahsavar A, Poitevin F, Huon C, Menny A, Nemecz À, Haouz A, Changeux JP, Corringer PJ, Delarue M, Crystal structures of a pentameric ligand-gated ion channel provide a mechanism for activation, Proc. Natl. Acad. Sci. U.S.A. 2014 Jan;111(3):966-71.
• 2013
  Costi R, Crucitti GC, Pescatori L, Messore A, Scipione L, Tortorella S, Amoroso A, Crespan E, Campiglia P, Maresca B, Porta A, Granata I, Novellino E, Gouge J, Delarue M, Maga G, Di Santo R, New nucleotide-competitive non-nucleoside inhibitors of terminal deoxynucleotidyl transferase: discovery, characterization, and crystal structure in complex with the target, J. Med. Chem. 2013 Sep;56(18):7431-41.
• 2013
  Gouge J, Rosario S, Romain F, Beguin P, Delarue M, Structures of intermediates along the catalytic cycle of terminal deoxynucleotidyltransferase: dynamical aspects of the two-metal ion mechanism, J. Mol. Biol. 2013 Nov;425(22):4334-52.
• 2013
  Sauguet L, Poitevin F, Murail S, Van Renterghem C, Moraga-Cid G, Malherbe L, Thompson AW, Koehl P, Corringer PJ, Baaden M, Delarue M, Structural basis for ion permeation mechanism in pentameric ligand-gated ion channels, EMBO J. 2013 Mar;32(5):728-41.
• 2013
  Smaoui MR, Poitevin F, Delarue M, Koehl P, Orland H, Waldispühl J, Computational assembly of polymorphic amyloid fibrils reveals stable aggregates, Biophys. J. 2013 Feb;104(3):683-93.
• 2013
  Sauguet L, Howard RJ, Malherbe L, Lee US, Corringer PJ, Harris RA, Delarue M, Structural basis for potentiation by alcohols and anaesthetics in a ligand-gated ion channel, Nat Commun 2013;4:1697.
• 2012
  Giraut A, Abu El-Asrar R, Marlière P, Delarue M, Herdewijn P, 2′-Deoxyribonucleoside phosphoramidate triphosphate analogues as alternative substrates for E. coli polymerase III, Chembiochem 2012 Nov;13(16):2439-44.
• 2012
  Gouge J, Ralec C, Henneke G, Delarue M, Molecular recognition of canonical and deaminated bases by P. abyssi family B DNA polymerase, J. Mol. Biol. 2012 Oct;423(3):315-36.
• 2012
  Corringer PJ, Poitevin F, Prevost MS, Sauguet L, Delarue M, Changeux JP, Structure and pharmacology of pentameric receptor channels: from bacteria to brain, Structure 2012 Jun;20(6):941-56.
• 2012
  Prevost MS, Sauguet L, Nury H, Van Renterghem C, Huon C, Poitevin F, Baaden M, Delarue M, Corringer PJ, A locally closed conformation of a bacterial pentameric proton-gated ion channel, Nat. Struct. Mol. Biol. 2012 May;19(6):642-9.
• 2011
  Nury H, Delarue M, Corringer PJ, [X-ray structures of general anesthetics bound to their molecular targets], Med Sci (Paris) 2011 Dec;27(12):1056-7.
• 2011
  Koehl P, Orland H, Delarue M, Adapting Poisson-Boltzmann to the self-consistent mean field theory: application to protein side-chain modeling, J Chem Phys 2011 Aug;135(5):055104.
• 2011
  Poitevin F, Orland H, Doniach S, Koehl P, Delarue M, AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models, Nucleic Acids Res. 2011 Jul;39(Web Server issue):W184-9.
• 2011
  Nury H, Van Renterghem C, Weng Y, Tran A, Baaden M, Dufresne V, Changeux JP, Sonner JM, Delarue M, Corringer PJ, X-ray structures of general anaesthetics bound to a pentameric ligand-gated ion channel, Nature 2011 Jan;469(7330):428-31.
• 2010
  Piton J, Petrella S, Delarue M, André-Leroux G, Jarlier V, Aubry A, Mayer C, Structural insights into the quinolone resistance mechanism of Mycobacterium tuberculosis DNA gyrase, PLoS ONE 2010 Aug;5(8):e12245.
• 2010
  Nury H, Poitevin F, Van Renterghem C, Changeux JP, Corringer PJ, Delarue M, Baaden M, One-microsecond molecular dynamics simulation of channel gating in a nicotinic receptor homologue, Proc. Natl. Acad. Sci. U.S.A. 2010 Apr;107(14):6275-80.
• 2010
  Koehl P, Delarue M, AQUASOL: An efficient solver for the dipolar Poisson-Boltzmann-Langevin equation, J Chem Phys 2010 Feb;132(6):064101.
• 2009
  Corringer PJ, Baaden M, Bocquet N, Delarue M, Dufresne V, Nury H, Prevost M, Van Renterghem C, Atomic structure and dynamics of pentameric ligand-gated ion channels: new insight from bacterial homologues, J. Physiol. (Lond.) 2010 Feb;588(Pt 4):565-72.
• 2009
  Nury H, Bocquet N, Le Poupon C, Raynal B, Haouz A, Corringer PJ, Delarue M, Crystal structure of the extracellular domain of a bacterial ligand-gated ion channel, J. Mol. Biol. 2010 Feb;395(5):1114-27.
• 2009
  Romain F, Barbosa I, Gouge J, Rougeon F, Delarue M, Conferring a template-dependent polymerase activity to terminal deoxynucleotidyltransferase by mutations in the Loop1 region, Nucleic Acids Res. 2009 Aug;37(14):4642-56.
• 2009
  Koehl P, Orland H, Delarue M, Computing ion solvation free energies using the dipolar Poisson model, J Phys Chem B 2009 Apr;113(17):5694-7.
• 2009
  Duclert-Savatier N, Poggi L, Miclet E, Lopes P, Ouazzani J, Chevalier N, Nilges M, Delarue M, Stoven V, Insights into the enzymatic mechanism of 6-phosphogluconolactonase from Trypanosoma brucei using structural data and molecular dynamics simulation, J. Mol. Biol. 2009 May;388(5):1009-21.
• 2009
  Delfosse V, Girard E, Birck C, Delmarcelle M, Delarue M, Poch O, Schultz P, Mayer C, Structure of the archaeal pab87 peptidase reveals a novel self-compartmentalizing protease family, PLoS One. 2009;4(3):e4712..
• 2009
  Koehl P, Orland H, Delarue M, Beyond the Poisson-Boltzmann model: modeling biomolecule-water and water-water interactions, Phys. Rev. Lett. 2009 Feb;102(8):087801.
• 2009
  Laowanapiban P, Kapustina M, Vonrhein C, Delarue M, Koehl P, Carter CW, Independent saturation of three TrpRS subsites generates a partially assembled state similar to those observed in molecular simulations, Proc. Natl. Acad. Sci. U.S.A. 2009 Feb;106(6):1790-5.
• 2008
  Bocquet N, Nury H, Baaden M, Le Poupon C, Changeux JP, Delarue M, Corringer PJ, X-ray structure of a pentameric ligand-gated ion channel in an apparently open conformation, Nature 2009 Jan;457(7225):111-4.
• 2008
  Azuara C, Orland H, Bon M, Koehl P, Delarue M, Incorporating dipolar solvents with variable density in Poisson-Boltzmann electrostatics, Biophys. J. 2008 Dec;95(12):5587-605.
• 2007
  Delarue M, Dealing with structural variability in molecular replacement and crystallographic refinement through normal-mode analysis, Acta Crystallogr. D Biol. Crystallogr. 2008 Jan;64(Pt 1):40-8.
• 2007
  Franklin J, Koehl P, Doniach S, Delarue M, MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape, Nucleic Acids Res. 2007 Jul;35(Web Server issue):W477-82.
• 2006
  Delarue M, An asymmetric underlying rule in the assignment of codons: possible clue to a quick early evolution of the genetic code via successive binary choices, RNA 2007 Feb;13(2):161-9.
• 2006
  Delarue M, Duclert-Savatier N, Miclet E, Haouz A, Giganti D, Ouazzani J, Lopez P, Nilges M, Stoven V, Three dimensional structure and implications for the catalytic mechanism of 6-phosphogluconolactonase from Trypanosoma brucei, J. Mol. Biol. 2007 Feb;366(3):868-81.
• 2006
  Loth K, Abergel D, Pelupessy P, Delarue M, Lopes P, Ouazzani J, Duclert-Savatier N, Nilges M, Bodenhausen G, Stoven V, Determination of dihedral Psi angles in large proteins by combining NH(N)/C(alpha)H(alpha) dipole/dipole cross-correlation and chemical shifts, Proteins 2006 Sep;64(4):931-9.
• 2006
  Lindahl E, Azuara C, Koehl P, Delarue M, NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis, Nucleic Acids Res. 2006 Jul;34(Web Server issue):W52-6.
• 2006
  Azuara C, Lindahl E, Koehl P, Orland H, Delarue M, PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics, Nucleic Acids Res. 2006 Jul;34(Web Server issue):W38-42.
• 2005
  Lindahl E, Delarue M, Refinement of docked protein-ligand and protein-DNA structures using low frequency normal mode amplitude optimization, Nucleic Acids Res. 2005;33(14):4496-506.
• 2005
  Taly A, Delarue M, Grutter T, Nilges M, Le Novère N, Corringer PJ, Changeux JP, Normal mode analysis suggests a quaternary twist model for the nicotinic receptor gating mechanism, Biophys. J. 2005 Jun;88(6):3954-65.
• 2004
  Delarue M, Dumas P, On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models, Proc. Natl. Acad. Sci. U.S.A. 2004 May;101(18):6957-62.
• 2003
  Fioravanti E, Haouz A, Ursby T, Munier-Lehmann H, Delarue M, Bourgeois D., Mycobacterium tuberculosis thymidylate kinase: structural studies of intermediates along the reaction pathway. Fioravanti E, Haouz A, Ursby T, Munier-Lehmann H, Delarue M, Bourgeois D., J Mol Biol. 2003 Apr 11;327(5):1077-92..
• 2003
  Haouz A, Vanheusden V, Munier-Lehmann H, Froeyen M, Herdewijn P, Van Calenbergh S, Delarue M, Enzymatic and structural analysis of inhibitors designed against Mycobacterium tuberculosis thymidylate kinase. New insights into the phosphoryl transfer mechanism, J. Biol. Chem. 2003 Feb;278(7):4963-71.
• 2002
  Delarue M*, Sanejouand YH., Simplified normal mode analysis of conformational transitions in DNA-dependent polymerases: the elastic network model., J Mol Biol. 2002 Jul 26;320(5):1011-24..
• 2002
  Manallack DT, Pitt WR, Herdewijn P, Balzarini J, De Clercq E, Sanderson MR, Sohi M, Wien F, Munier-Lehmann H, Haouz A, Delarue M, Database searching for thymidine and thymidylate kinase inhibitors using three-dimensional structure-based methods, J Enzyme Inhib Med Chem 2002 Jun;17(3):167-74.
• 2002
  Ursby T, Weik M, Fioravanti E, Delarue M, Goeldner M, Bourgeois D, Cryophotolysis of caged compounds: a technique for trapping intermediate states in protein crystals, Acta Crystallogr. D Biol. Crystallogr. 2002 Apr;58(Pt 4):607-14.
• 2002
  Delarue M, Boulé JB, Lescar J, Expert-Bezançon N, Jourdan N, Sukumar N, Rougeon F, Papanicolaou C., Crystal structures of a template-independent DNA polymerase: murine terminal deoxynucleotidyltransferase., EMBO J. 2002 Feb 1;21(3):427-39..
• 2001
  Li de la Sierra I, Munier-Lehmann H, Gilles AM, Bârzu O, Delarue M., X-ray structure of TMP kinase from Mycobacterium tuberculosis complexed with TMP at 1.95 A resolution., J Mol Biol. 2001 Aug 3;311(1):87-100..
• 2000
  Sukumar N, Boulé JB, Expert-Bezançon N, Jourdan N, Lescar J, Rougeon F, Papanicolaou C, Delarue M., Crystallization of the catalytic domain of murine terminal deoxynucleotidyl transferase., Acta Crystallogr D Biol Crystallogr. 2000 Dec;56(Pt 12):1662-4..
• 2000
  Delarue M, Orland H., General formalism for phase combination and phase refinement: a statistical thermodynamics approach in reciprocal space., Acta Crystallogr A. 2000 Nov;56(Pt 6):562-74. Erratum in: Acta Crystallogr A. 2001 Jan;57(Pt 1):118..
• 2000
  Delarue M., Resolution of the phase-ambiguity problem in the centrosymmetric P [1] space group by Monte Carlo methods., Acta Crystallogr A. 2000 Nov;56(Pt 6):554-61..
• 2000
  Bada M, Walther D, Arcangioli B, Doniach S, Delarue M., Solution structural studies and low-resolution model of the Schizosaccharomyces pombe sap1 protein., J Mol Biol. 2000 Jul 14;300(3):563-74..
• 2000
  Rees B, Webster G, Delarue M, Boeglin M, Moras D., Aspartyl tRNA-synthetase from Escherichia coli: flexibility and adaptability to the substrates., J Mol Biol. 2000 Jun 23;299(5):1157-64..
• 2000
  Li de la Sierra I, Munier-Lehmann H, Gilles AM, Bârzu O, Delarue M., Crystallization and preliminary X-ray analysis of the thymidylate kinase from Mycobacterium tuberculosis., Acta Crystallogr D Biol Crystallogr. 2000 Feb;56(Pt 2):226-8..
• 1998
  Koehl P, and Delarue M., Minimisation of protein lattice distortion based on self-consitent mean-field theory., J. Chem. Phys. 1998 108:9540-49..
• 1997
  Delarue M, Koehl P., The inverse protein folding problem: self-consistent mean field optimisation of a structure specific mutation matrix., Pac Symp Biocomput. 1997:109-21..
• 1997
  Koehl P, Delarue M., The native sequence determines sidechain packing in a protein, but does optimal sidechain packing determine the native sequence?, Pac Symp Biocomput. 1997:198-209..
• 1996
  Snewin VA, Khouri E, Mattei D, Tekaia F, Delarue M, Mendis KN, David PH., Cloning and characterisation of a gene from Plasmodium vivax and P. knowlesi: homology with valine-tRNA synthetase., Gene. 1996 Sep 16;173(2):137-45..
• 1996
  Poch O, Delarue M., Converting sequence block alignments into structural insights., Methods Enzymol. 1996 266:662-80. Review..
• 1996
  Koehl P, Delarue M., Mean-field minimization methods for biological macromolecules., Curr Opin Struct Biol. 1996 Apr;6(2):222-6. Review..
• 1995
  Mosyak L, Reshetnikova L, Goldgur Y, Delarue M, Safro MG., Structure of phenylalanyl-tRNA synthetase from Thermus thermophilus., Nat Struct Biol. 1995 Jul;2(7):537-47..
• 1995
  Delarue M., Partition of aminoacyl-tRNA synthetases in two different structural classes dating back to early metabolism: implications for the origin of the genetic code and the nature of protein sequences., J Mol Evol. 1995 Dec;41(6):703-11..
• 1995
  Delarue M, Koehl P., Atomic environment energies in proteins defined from statistics of accessible and contact surface areas., J Mol Biol. 1995 Jun 9;249(3):675-90..
• 1995
  Koehl P, Delarue M., A self consistent mean field approach to simultaneous gap closure and side-chain positioning in homology modelling., Nat Struct Biol. 1995 Feb;2(2):163-70..
• 1995
  Delarue M., Aminoacyl-tRNA synthetases., Curr Opin Struct Biol. 1995 Feb;5(1):48-55. Review..
• 1994
  Poterszman A*, Delarue M*, Thierry JC, Moras D., Synthesis and recognition of aspartyl-adenylate by Thermus thermophilus aspartyl-tRNA synthetase., J Mol Biol. 1994 Nov 25;244(2):158-67..
• 1994
  Jung S, Miranda EA, de Murcia JM, Niedergang C, Delarue M, Schulz GE, de Murcia GM., Crystallization and X-ray crystallographic analysis of recombinant chicken poly(ADP-ribose) polymerase catalytic domain produced in Sf9 insect cells., J Mol Biol. 1994 Nov 18;244(1):114-6..
• 1994
  Koehl P, Delarue M., Polar and nonpolar atomic environments in the protein core: implications for folding and binding., Proteins. 1994 Nov;20(3):264-78..
• 1994
  Delarue M, Poterszman A, Nikonov S, Garber M, Moras D, Thierry JC., Crystal structure of a prokaryotic aspartyl tRNA-synthetase., EMBO J. 1994 Jul 15;13(14):3219-29..
• 1994
  Koehl P, Delarue M., Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy., J Mol Biol. 1994 Jun 3;239(2):249-75..
• 1994
  Müller R, Poch O, Delarue M, Bishop DH, Bouloy M., Rift Valley fever virus L segment: correction of the sequence and possible functional role of newly identified regions conserved in RNA-dependent polymerases., J Gen Virol. 1994 Jun;75 (Pt 6):1345-52..
• 1993
  Delarue M, Moras D. Bioessays. 1993 Oct;15(10):675-87. Review, The aminoacyl-tRNA synthetase family: modules at work., Bioessays. 1993 Oct;15(10):675-87. Review.
• 1993
  Mourey L, Samama JP, Delarue M, Petitou M, Choay J, Moras D., Crystal structure of cleaved bovine antithrombin III at 3.2 A resolution., J Mol Biol. 1993 Jul 5;232(1):223-41..
• 1993
  Simonin F, Poch O, Delarue M, de Murcia G., Identification of potential active-site residues in the human poly(ADP-ribose) polymerase., J Biol Chem. 1993 Apr 25;268(12):8529-35..
• 1992
  Reshetnikova L, Chernaya M, Ankilova V, Lavrik O, Delarue M, Thierry JC, Moras D, Safro M., Three-dimensional structure of phenylalanyl-transfer RNA synthetase from Thermus thermophilus HB8 at 0.6- nm resolution., Eur J Biochem. 1992 Sep 1;208(2):411-7..
• 1992
  M. Delarue, D. Moras, Aminoacyl-tRNA Synthetases: Partition into two Classes, Nucleic Acids and Molecular Biology vol 6 pp 203-224.
• 1990
  Eriani G, Delarue M, Poch O, Gangloff J, Moras D., Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs., Nature. 1990 Sep 13;347(6289):203-6..
• 1990
  Mourey L, Samama JP, Delarue M, Choay J, Lormeau JC, Petitou M, Moras D., Antithrombin III: structural and functional aspects., Biochimie. 1990 Aug;72(8):599-608. Review..
• 1990
  Delarue M, Samama J-P, Mourey L and Moras D., Crystal structure of cleaved bovine antithrombin III at 3.2 A resolution, Acta Cryst. (1990). B46: 550-556..
• 1990
  Delarue M, Poch O, Tordo N, Moras D, Argos P., An attempt to unify the structure of polymerases., Protein Eng. 1990 May;3(6):461-7..
• 1989
  Samama JP, Delarue M, Mourey L, Choay J, Moras D., Crystallization and preliminary crystallographic data for bovine antithrombin III., J Mol Biol. 1989 Dec 20;210(4):877-9..
• 1989
  Poch O, Sauvaget I, Delarue M, Tordo N., Identification of four conserved motifs among the RNA-dependent polymerase encoding elements., EMBO J. 1989 Dec 1;8(12):3867-74..
• 1989
  M. Delarue and D. Moras, RNA Structure, Nucleic Acids and Molecular Biology vol. 3 pp 182-196.