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  • team
  • department
  • center
  • program_project
  • nrc
  • whocc
  • project
  • software
  • tool
  • patent
  • Administrative Staff
  • Assistant Professor
  • Associate Professor
  • Clinical Research Assistant
  • Clinical Research Nurse
  • Clinician Researcher
  • Department Manager
  • Dual-education Student
  • Full Professor
  • Honorary Professor
  • Lab assistant
  • Master Student
  • Non-permanent Researcher
  • Nursing Staff
  • Permanent Researcher
  • Pharmacist
  • PhD Student
  • Physician
  • Post-doc
  • Prize
  • Project Manager
  • Research Associate
  • Research Engineer
  • Retired scientist
  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Deputy Head of Facility
  • Director of Center
  • Director of Department
  • Director of Institute
  • Director of National Reference Center
  • Group Leader
  • Head of Facility
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Starting Date
23
Jun 2016
Keywords
14 Keywords
Status
Ongoing
Members
1
Structures
1

About

GDSCTools is a free open-source Python library dedicated to the study of drug responses in the context of the GDSC (Genomics of Drug Sensitivity in Cancer) project. The main developer is `Thomas Cokelaer (Institut Pasteur) `_, and it is a
joint effort of the groups of Mathew Garnett (Sanger Institute) and Julio Saez-Rodriguez (RWTH Aachen & EMBL-EBI)

It contains utilities to find significant associations between drugs and genomic features (e.g., gene mutation) based on an ANOVA analysis. Note, however, that other methods based on e.g., Elastic Net are also available. The GDSCTools library should also be useful in manipulating dedicated data sets such as IC50 or MoBEM (genomic features) data structures.