- Identification of genes involved in ASD (autism spectrum disorders)
- CNV (Copy Number Variants) pipeline from SNP arrays:
– quality control
– CNV calling with 1 to 3 algorithms
– merging of the detected CNV
– defragmentation of the CNV
– annotation and frequencies in cohort and DGV
– visualization in genome browsers (IGV, UCSC)
– inheritance analysis - Whole exome sequencing and whole genome sequencing pipelines:
– quality control
– mapping
– variant calling (SNV: Single Nuclotide Variant, InDel: Insertion / Deletion, SV: Structural Variants, including CNV: Copy Number Variants)
– annotation
– filtering
– cohort and family analysis
- CNV (Copy Number Variants) pipeline from SNP arrays:
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Timeline
Projects
Software
Publications
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2023Phenotypic effects of genetic variants associated with autism., Nat Med 2023 Jun; (): .
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2019Both rare and common genetic variants contribute to autism in the Faroe Islands., NPJ Genom Med 2019 ; 4(): 1.
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2019Synesthesia & Autistic Features in a Large Family:evidence for spatial imagery as a common factor, Behav. Brain Res. 2019 Jan;.
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2018Homozygous 2p11.2 deletion supports the implication of ELMOD3 in hearing loss and reveals the potential association of CAPG with ASD/ID etiology, J. Appl. Genet. 2019 Feb;60(1):49-56.
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2018Measuring and Estimating the Effect Sizes of Copy Number Variants on General Intelligence in Community-Based Samples., JAMA Psychiatry 2018 05; 75(5): 447-457.
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2017A framework to identify contributing genes in patients with Phelan-McDermid syndrome., NPJ Genom Med 2017 ; 2(): 32.
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2016CNTN6 mutations are risk factors for abnormal auditory sensory perception in autism spectrum disorders, Mol. Psychiatry 2017 04;22(4):625-633.
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201511q24.2-25 micro-rearrangements in autism spectrum disorders: Relation to brain structures., Am J Med Genet A 2015 Dec; 167A(12): 3019-30.
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2014Meta-analysis of SHANK Mutations in Autism Spectrum Disorders: a gradient of severity in cognitive impairments., PLoS Genet 2014 Sep; 10(9): e1004580.