Ligne de temps
Eduardo Rocha
Responsable de Structure
10 juil. 2024
07 mai 2024
publication
Type IV-A3 CRISPR-Cas systems drive inter-plasmid conflicts by acquiring spacers in trans.
Lire plus12 mars 2024
publication
Perturbation and resilience of the gut microbiome up to 3 months after β-lactams exposure in healthy volunteers suggest an important role of microbial β-lactamases.
Lire plus06 mars 2024
publication
Capsules and their traits shape phage susceptibility and plasmid conjugation efficiency
Lire plus20 févr. 2024
22 janv. 2024
event
GG department seminar: Tai Dagan (University of Kiel, Germany): “Multilevel drift and selection in the evolution of prokaryotic plasmids”; February 1st, 2024 @11.00am; Auditorium F. Jacob
Lire plus12 janv. 2024
publication
Cassette recombination dynamics within chromosomal integrons are regulated by toxin-antitoxin systems.
Lire plus03 janv. 2024
publication
Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites.
Lire plus06 nov. 2023
news
Chance Favors the Prepared Genomes: Horizontal Transfer Shapes the Emergence of Antibiotic Resistance Mutations in Core Genes.
Lire plus04 oct. 2023
publication
Chance Favors the Prepared Genomes: Horizontal Transfer Shapes the Emergence of Antibiotic Resistance Mutations in Core Genes.
Lire plus03 août 2023
publication
Latent evolution of biofilm formation depends on life-history and genetic background
Lire plus30 mai 2023
news
The parasites of parasites: identification and characterization of thousands of bacteriophage satellites across bacteria
Lire plus30 mai 2023
06 avr. 2023
news
Highlighted paper: “Competition between lysogenic and sensitive bacteria is determined by the fitness costs of the different emerging phage-resistance strategies” ; Rendueles et al. ; eLife – March 2023
Lire plus28 mars 2023
publication
Competition between lysogenic and sensitive bacteria is determined by the fitness costs of the different emerging phage-resistance strategies.
Lire plus03 mars 2023
publication
Identification and characterization of thousands of bacteriophage satellites across bacteria.
Lire plus29 nov. 2022
publication
Origins of transfer establish networks of functional dependencies for plasmid transfer by conjugation.
Lire plus19 oct. 2022
publication
Structural and Genomic Evolution of RRNPPA Systems and Their Pheromone Signaling.
Lire plus26 sept. 2022
publication
Phage-Plasmids Spread Antibiotic Resistance Genes through Infection and Lysogenic Conversion.
Lire plus13 août 2022
publication
Adaptation to novel spatially-structured environments is driven by the capsule and alters virulence-associated traits.
Lire plus02 juin 2022
publication
Evolution of Plasmid Mobility: Origin and Fate of Conjugative and Nonconjugative Plasmids.
Lire plus11 mai 2022
17 janv. 2022
publication
To catch a hijacker: abundance, evolution and genetic diversity of P4-like bacteriophage satellites.
Lire plus10 nov. 2021
news
Back on: “The Ancient DNA journey: from humans to human pathogens and microbiomes” – 4/11/2021
Lire plus21 oct. 2021
06 oct. 2021
01 juil. 2021
publication
Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae.
Lire plus22 avr. 2021
22 avr. 2021
22 avr. 2021
news
Bacteria have numerous phage–plasmids with conserved phage and variable plasmid genes
Lire plus18 mars 2021
publication
Bacteria have numerous distinctive groups of phage-plasmids with conserved phage and variable plasmid gene repertoires.
Lire plus03 mars 2021
03 mars 2021
publication
Nutrient conditions are primary drivers of bacterial capsule maintenance in Klebsiella
Lire plus01 mars 2021
publication
The impact of genetic diversity on gene essentiality within the Escherichia coli species.
Lire plus11 févr. 2021
publication
Causes and consequences of bacteriophage diversification via genetic exchanges across lifestyles and bacterial taxa.
Lire plus31 juil. 2020
30 juil. 2020
publication
Modular prophage interactions driven by capsule serotype select for capsule loss under phage predation
Lire plus17 juil. 2020
publication
Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids.
Lire plus05 juin 2020
01 juin 2020
publication
Phylogenetic background and habitat drive the genetic diversification of Escherichia coli.
Lire plus08 mai 2020
publication
The major subunit of widespread competence pili exhibits a novel and conserved type IV pilin fold.
Lire plus01 mai 2020
publication
The Evolution of Protein Secretion Systems by Co-option and Tinkering of Cellular Machineries.
Lire plus29 avr. 2020
publication
Macromolecular crowding links ribosomal protein gene dosage to growth rate in Vibrio cholerae.
Lire plus10 févr. 2020
news
Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements
Lire plus10 févr. 2020
news
Community diversity and habitat structure shape the repertoire of extracellular proteins in bacteria
Lire plus07 févr. 2020
publication
Intracellular Positioning Systems Limit the Entropic Eviction of Secondary Replicons Toward the Nucleoid Edges in Bacterial Cells.
Lire plus06 févr. 2020
publication
Community diversity and habitat structure shape the repertoire of extracellular proteins in bacteria.
Lire plus01 févr. 2020
24 janv. 2020
publication
Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements
Lire plus01 janv. 2020
publication
Identifying Conjugative Plasmids and Integrative Conjugative Elements with CONJscan.
Lire plus03 sept. 2019
19 juil. 2019
publication
Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility
Lire plus18 juil. 2019
13 mai 2019
publication
A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria
Lire plus24 avr. 2019
12 févr. 2019
04 févr. 2019
07 janv. 2019
21 déc. 2018
02 juil. 2018
publication
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
Lire plus14 juin 2018
publication
Host range and genetic plasticity explain the co-existence of integrative and extrachromosomal mobile genetic elements
Lire plus12 juin 2018
11 juin 2018
01 juin 2018
publication
Neutral Theory, Microbial Practice: Challenges in Bacterial Population Genetics
Lire plus01 janv. 2018
publication
Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement
Lire plus12 déc. 2017
11 oct. 2017
10 oct. 2017
02 oct. 2017
publication
Metagenomic assessment of the interplay between the environment and the genetic diversification of Acinetobacter
Lire plus19 sept. 2017
18 sept. 2017
publication
Recruitment of a lineage-specific virulence regulatory pathway promotes intracellular infection by a plant pathogen experimentally evolved into a legume symbiont.
Lire plus06 sept. 2017
publication
Integrative and conjugative elements and their hosts: composition, distribution and organization
Lire plus29 août 2017
24 juil. 2017
publication
Abundance and co-occurrence of extracellular capsules increase environmental breadth: Implications for the emergence of pathogens
Lire plus24 mai 2017
news
Emerging diseases: a highly mutant strain of the Elizabethkingia bacterium caused an outbreak in Wisconsin
Lire plus12 avr. 2017
event
“Microbiome evolution and function in social bees” by Nancy MORAN – Genomes & Genetics Departemental seminar co-organized with Microbiology Departement
Lire plus10 avr. 2017
publication
Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer
Lire plus28 mars 2017
publication
Differences in Integron Cassette Excision Dynamics Shape a Trade-Off between Evolvability and Genetic Capacitance.
Lire plus15 mars 2017
01 mars 2017
publication
Identification of Protein Secretion Systems in Bacterial Genomes Using MacSyFinder
Lire plus01 févr. 2017
20 déc. 2016
10 oct. 2016
news
A population biology study of Listeria ushers in a new era in listeriosis surveillance
Lire plus11 sept. 2016
27 juil. 2016
publication
Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis
Lire plus02 mai 2016
publication
Regulation of genetic flux between bacteria by restriction-modification systems.
Lire plus29 avr. 2016
publication
Identification and analysis of integrons and cassette arrays in bacterial genomes.
Lire plus25 mars 2016
publication
Genetic and life-history traits associated with the distribution of prophages in bacteria.
Lire plus17 mars 2016
16 mars 2016
01 mars 2016
01 mars 2016
publication
The impact of selection, gene conversion, and biased sampling on the assessment of microbial demography
Lire plus01 mars 2016
publication
Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity.
Lire plus01 févr. 2016
news
Listeria: identification of hypervirulent strains with placental and cerebral tropism
Lire plus04 janv. 2016
15 nov. 2015
10 nov. 2015
09 oct. 2015
08 oct. 2015
06 oct. 2015
10 sept. 2015
10 sept. 2015
05 sept. 2015
05 sept. 2015
05 sept. 2015
05 sept. 2015
05 sept. 2015
05 sept. 2015
04 sept. 2015
04 sept. 2015
04 sept. 2015
04 sept. 2015
15 juin 2015
15 juin 2015
11 mai 2015
05 mai 2015
publication
Eco-Evolutionary Dynamics of Episomes among Ecologically Cohesive Bacterial Populations
Lire plus25 févr. 2015
publication
Insights on the emergence of Mycobacterium tuberculosis from the analysis of Mycobacterium kansasii
Lire plus13 nov. 2014
publication
TLR9 activation is triggered by the excess of stimulatory versus inhibitory motifs present in Trypanosomatidae DNA
Lire plus17 oct. 2014
publication
MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems
Lire plus13 oct. 2014
publication
The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences.
Lire plus08 oct. 2014
02 sept. 2014
publication
Transient hypermutagenesis accelerates the evolution of legume endosymbionts following horizontal gene transfer
Lire plus12 août 2014
publication
The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts
Lire plus04 août 2014
12 mars 2014
publication
Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion
Lire plus09 janv. 2014
26 sept. 2013
publication
Manipulating or superseding host recombination functions: a dilemma that shapes phage evolvability
Lire plus01 mars 2013
publication
Clinical trial evaluating color change and tooth sensitivity throughout and following in-office bleaching
Lire plus01 mars 2013
01 janv. 2013
publication
Natural genome diversity of AI-2 quorum sensing in Escherichia coli: conserved signal production but labile signal reception
Lire plus01 janv. 2013
12 déc. 2012
26 nov. 2012
publication
Rapid evolution of the sequences and gene repertoires of secreted proteins in bacteria
Lire plus21 nov. 2012
30 oct. 2012
publication
Influence of platform and abutment angulation on peri-implant bone. A three-dimensional finite element stress analysis
Lire plus11 oct. 2012
publication
Antibiotic resistance plasmids spread among natural isolates of Escherichia coli in spite of CRISPR elements
Lire plus27 sept. 2012
publication
The non-flagellar type III secretion system evolved from the bacterial flagellum and diversified into host-cell adapted systems
Lire plus13 sept. 2012
24 août 2012
publication
Characterization of novel phages isolated in coagulase-negative staphylococci reveals evolutionary relationships with Staphylococcus aureus phages
Lire plus06 juil. 2012
publication
A Single Amino Acid Substitution Changes the Self-Assembly Status of a Type IV Piliation Secretin
Lire plus29 févr. 2012
publication
After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection
Lire plus02 févr. 2012
publication
Immune subversion and quorum-sensing shape the variation in infectious dose among bacterial pathogens
Lire plus30 nov. 2011
publication
Investment in rapid growth shapes the evolutionary rates of essential proteins
Lire plus16 sept. 2011
18 août 2011
publication
The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation
Lire plus18 mars 2011
publication
CRISPR distribution within the Escherichia coli species is not suggestive of immunity-associated diversifying selection
Lire plus24 févr. 2011
publication
Function-specific accelerations in rates of sequence evolution suggest predictable epistatic responses to reduced effective population size
Lire plus27 janv. 2011
publication
Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes
Lire plus09 sept. 2010
publication
Mutational patterns cannot explain genome composition: Are there any neutral sites in the genomes of bacteria?
Lire plus01 sept. 2010
15 juin 2010
publication
The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella
Lire plus08 avr. 2010
24 mars 2010
15 janv. 2010
17 déc. 2009
publication
Genome-wide analysis of DNA repeats in Burkholderia cenocepacia J2315 identifies a novel adhesin-like gene unique to epidemic-associated strains of the ET-12 lineage
Lire plus01 oct. 2009
publication
Horizontal gene transfer of the secretome drives the evolution of bacterial cooperation and virulence
Lire plus19 sept. 2009
publication
Alternative to homo-oligomerisation: the creation of local symmetry in proteins by internal amplification
Lire plus01 mai 2009
01 avr. 2009
23 janv. 2009
publication
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
Lire plus04 nov. 2008
publication
The temporal dynamics of slightly deleterious mutations in Escherichia coli and Shigella spp
Lire plus17 oct. 2008
publication
The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients
Lire plus15 oct. 2008
25 juin 2008
publication
An assessment of the impacts of molecular oxygen on the evolution of proteomes
Lire plus16 mai 2008
09 mai 2008
publication
Comparison of stress distribution between complete denture and implant-retained overdenture-2D FEA
Lire plus26 mars 2008
publication
The impact of the neisserial DNA uptake sequences on genome evolution and stability
Lire plus07 janv. 2008
01 janv. 2008
29 sept. 2007
publication
From GC skews to wavelets: a gentle guide to the analysis of compositional asymmetries in genomic data
Lire plus04 sept. 2007
10 juil. 2007
publication
Reconstructing the ancestor of Mycobacterium leprae: the dynamics of gene loss and genome reduction.
Lire plus23 janv. 2007
15 janv. 2007
26 oct. 2006
11 oct. 2006
24 août 2006
01 juil. 2006
publication
Intrastrain heterogeneity of the mgpB gene in Mycoplasma genitalium is extensive in vitro and in vivo and suggests that variation is generated via recombination with repetitive chromosomal sequences
Lire plus30 juin 2006
15 mai 2006
10 mars 2006
publication
Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages
Lire plus01 mars 2006
publication
Replication-associated gene dosage effects shape the genomes of fast-growing bacteria but only for transcription and translation genes
Lire plus09 nov. 2005
18 oct. 2005
16 sept. 2005
publication
Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125
Lire plus26 août 2005
publication
Comparative and evolutionary analysis of the bacterial homologous recombination systems
Lire plus13 juil. 2005
01 janv. 2005
publication
The unusually large Plasmodium telomerase reverse-transcriptase localizes in a discrete compartment associated with the nucleolus.
Lire plus12 oct. 2004
publication
Codon usage bias from tRNA’s point of view: redundancy, specialization, and efficient decoding for translation optimization
Lire plus01 oct. 2004
01 juin 2004
publication
Cytosine methylation is not the major factor inducing CpG dinucleotide deficiency in bacterial genomes
Lire plus01 juin 2004
15 nov. 2003
01 nov. 2003
31 oct. 2003
publication
An analysis of determinants of amino acids substitution rates in bacterial proteins
Lire plus01 août 2003
01 août 2003
publication
Associations between inverted repeats and the structural evolution of bacterial genomes
Lire plus01 août 2003
12 mai 2003
publication
An appraisal of the potential for illegitimate recombination in bacterial genomes and its consequences: from duplications to genome reduction
Lire plus15 oct. 2002
publication
A new family of highly variable proteins in the Chlamydophila pneumoniae genome
Lire plus01 sept. 2002
publication
Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes?
Lire plus01 juil. 2002
01 juin 2002
01 mai 2002
01 mai 2002
publication
Over-representation of repeats in stress response genes: a strategy to increase versatility under stressful conditions?
Lire plus01 sept. 2001
01 juin 2001
publication
Evolutionary role of restriction/modification systems as revealed by comparative genome analysis
Lire plus15 mai 2001
publication
The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis
Lire plus01 juil. 2000
30 juin 2000
publication
Sulphur islands in the Escherichia coli genome: markers of the cell’s architecture?
Lire plus31 mars 2000
publication
Implication of gene distribution in the bacterial chromosome for the bacterial cell factory
Lire plus01 nov. 1999
01 oct. 1999
01 sept. 1999
publication
Translation in Bacillus subtilis: roles and trends of initiation and termination, insights from a genome analysis
Lire plus01 sept. 1999
publication
Analysis of long repeats in bacterial genomes reveals alternative evolutionary mechanisms in Bacillus subtilis and other competent prokaryotes
Lire plus01 août 1999
01 avr. 1999
15 juin 1998
publication