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Projets Transversaux
Projets
CV
Academic positions:
- From 2023 : G5 junior group leader, Institut Pasteur, Paris
- From 2021: Chair position, Institut Prairie, Paris
- 2019: Visiting researcher, MIT CSAIL department, Cambridge, US (head: Manolis Kellis)
- From 2018: CNRS tenured researcher (Chargé de Recherche)
Awards:
- 2024: CNRS bronze medal
- 2022: prix Paoletti
- 2020: Sanofi iTech Awards
- 2018: L’Oreal-UNESCO Fellowship for women in science
Grants:
- 2024: ERC StG Multiview-CELL
- 2024: PEPR CELL-ID
- 2024: PEPR Santé Numerique
- 2022: ITMO-MIIC APL-EpiNet
- 2020: ANR JCJC scMOmix
Education:
- 2016-2018: Postdoctoral fellow, Institut Curie, Paris (head: Emmanuel Barillot)
- 2014-2015: Visiting Ph.D student, Aalto university, Helsinki, Finland (head: Santo Fortunato)
- 2013-2015: Ph.D student, University of Turin, Italy (head: Michele Caselle, Enzo Medico)
Publications
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2024scConfluence: single-cell diagonal integration with regularized Inverse Optimal Transport on weakly connected features., Nat Commun 2024 Sep; 15(1): 7762.
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2024Molecular mechanisms reconstruction from single-cell multi-omics data with HuMMuS., Bioinformatics 2024 Mar; (): .
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2023Paired single-cell multi-omics data integration with Mowgli., Nat Commun 2023 Nov; 14(1): 7711.
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2022Optimal Transport improves cell-cell similarity inference in single-cell omics data., Bioinformatics 2022 Feb; 38(8): 2169-77.
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2021Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer., Nat Commun 2021 Jan; 12(1): 124.
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2021Evaluating the Reproducibility of Single-Cell Gene Regulatory Network Inference Algorithms., Front Genet 2021 ; 12(): 617282.
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2020An Integrated Analysis of miRNA and Gene Expression Changes in Response to an Obesogenic Diet to Explore the Impact of Transgenerational Supplementation with Omega 3 Fatty Acids., Nutrients 2020 Dec; 12(12): .
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2020Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network., PLoS Comput Biol 2020 Feb; 16(2): e1007652.
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2020Interpreting pathways to discover cancer driver genes with Moonlight., Nat Commun 2020 Jan; 11(1): 69.
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2019Assessing reproducibility of matrix factorization methods in independent transcriptomes., Bioinformatics 2019 Nov; 35(21): 4307-4313.
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