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2022Optimal Transport improves cell-cell similarity inference in single-cell omics data., Bioinformatics 2022 Feb; 38(8): 2169-77.
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2021Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer., Nat Commun 2021 Jan; 12(1): 124.
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2021Evaluating the Reproducibility of Single-Cell Gene Regulatory Network Inference Algorithms., Front Genet 2021 ; 12(): 617282.
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2020An Integrated Analysis of miRNA and Gene Expression Changes in Response to an Obesogenic Diet to Explore the Impact of Transgenerational Supplementation with Omega 3 Fatty Acids., Nutrients 2020 Dec; 12(12): .
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2020Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network., PLoS Comput Biol 2020 Feb; 16(2): e1007652.
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2020Interpreting pathways to discover cancer driver genes with Moonlight., Nat Commun 2020 Jan; 11(1): 69.
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2019Investigating the epi-miRNome: identification of epi-miRNAs using transfection experiments., Epigenomics 2019 Nov; 11(14): 1581-1599.
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2019Assessing reproducibility of matrix factorization methods in independent transcriptomes., Bioinformatics 2019 Nov; 35(21): 4307-4313.
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2019Independent Component Analysis for Unraveling the Complexity of Cancer Omics Datasets., Int J Mol Sci 2019 Sep; 20(18): .
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2019Molecular Inverse Comorbidity between Alzheimer’s Disease and Lung Cancer: New Insights from Matrix Factorization., Int J Mol Sci 2019 Jun; 20(13): .
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