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2023Comparing methods for constructing and representing human pangenome graphs., Genome Biol 2023 Nov; 24(1): 274.
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2023BioConvert: a comprehensive format converter for life sciences., NAR Genom Bioinform 2023 Sep; 5(3): lqad074.
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2023Compression Algorithm for Colored de Bruijn Graphs, Leibniz International Proceedings in Informatics , 273 (17), Schloss Dagstuhl - Leibniz-Zentrum für Informatik, pp.1-14, 2023, 978-3-95977-294-5. ⟨10.4230/LIPIcs.WABI.2023.17⟩.
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2022The K-mer File Format: a standardized and compact disk representation of sets of k-mers., Bioinformatics 2022 Jul; (): .
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2020A Graph-Theoretic Barcode Ordering Model forLinked-Reads, 20th International Workshop on Algorithms in Bioinformatics (WABI 2020).
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2020Norine: update of the nonribosomal peptide resource., Nucleic Acids Res. 2020 01; 48(D1): D465-D469.
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2019SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data, BMC Bioinformatics 2019 Feb;20(1):88.
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2018Supervised machine learning outperforms taxonomy-based environmental DNA metabarcoding applied to biomonitoring, Mol Ecol Resour 2018 Jul;.
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2018MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes, Bioinformatics 2018 02;34(4):585-591.
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2016Norine: A powerful resource for novel nonribosomal peptide discovery, Synth Syst Biotechnol 2016 Jun;1(2):89-94.
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