Timeline

Thomas Bigot

Research Engineer

08 Sep 2022

publication

Microseek: A Protein-Based Metagenomic Pipeline for Virus Diagnostic and Discovery.

16 Feb 2022

publication

Bat coronaviruses related to SARS-CoV-2 and infectious for human cells.

25 May 2021

publication

Small-molecule inhibition of Lats kinases may promote Yap-dependent proliferation in postmitotic mammalian tissues.

11 Apr 2021

publication

The virome of Rhipicephalus, Dermacentor and Haemaphysalis ticks from Eastern Romania includes novel viruses with potential relevance for public health.

01 Apr 2021

publication

Prior infection by seasonal coronaviruses, as assessed by serology, does not prevent SARS-CoV-2 infection and disease in children, France, April to June 2020.

01 Apr 2021

publication

SARS-CoV-2 infection in schools in a northern French city: a retrospective serological cohort study in an area of high transmission, France, January to April 2020.

07 Feb 2021

publication

Deep Impact of Random Amplification and Library Construction Methods on Viral Metagenomics Results.

24 Sep 2020

course

Bioinformatics program for PhD students 2020-2021

09 Jun 2020

publication

Identification of Umbre Orthobunyavirus as a Novel Zoonotic Virus Responsible for Lethal Encephalitis in 2 French Patients with Hypogammaglobulinemia.

01 Mar 2020

publication

Whole genome sequencing and phylogenetic characterization of a novel bat-associated picornavirus-like virus with an unusual genome organization.

29 Feb 2020

publication

Viromics on Honey-Baited FTA Cards as a New Tool for the Detection of Circulating Viruses in Mosquitoes.

26 Jan 2020

publication

RNA Viruses of Amblyomma variegatum and Rhipicephalus microplus and Cattle Susceptibility in the French Antilles.

14 Nov 2019

publication

Six Nearly Complete Genome Segments of a Novel Reovirus Identified in Laotian Batflies.

06 Nov 2019

publication

Insights into the Host Range, Genetic Diversity, and Geographical Distribution of Jingmenviruses.

08 Jul 2019

publication

Simulation data for the estimation of numerical constants for approximating pairwise evolutionary distances between amino acid sequences

11 Apr 2019

publication

A Novel Polycipiviridae Virus Identified in Pteropus lylei Stools.

01 Jan 2019

publication

RVDB-prot, a reference viral protein database and its HMM profiles.

01 Jan 2019

publication

Monitoring Silent Spillovers Before Emergence: A Pilot Study at the Tick/Human Interface in Thailand.

28 Mar 2018

team

Expertise group: GIPhy – Genome Informatics and Phylogenetics

01 Dec 2017

publication

Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium

26 Jun 2015

team

Bioinformatics and Biostatistics HUB

11 Mar 2015

publication

Large-scale genotyping of highly polymorphic loci by next-generation sequencing: how to overcome the challenges to reliably genotype individuals?

21 May 2013

publication

Bio++: efficient extensible libraries and tools for computational molecular evolution

27 Mar 2013

publication

TPMS: a set of utilities for querying collections of gene trees

03 Dec 2012

publication

Patterns of molecular evolution in dioecious and non-dioecious Silene

10 Jun 2010

project

A little guide for advanced search:

Timeline

Microseek: A Protein-Based Metagenomic Pipeline for Virus Diagnostic and Discovery.

Bat coronaviruses related to SARS-CoV-2 and infectious for human cells.

Small-molecule inhibition of Lats kinases may promote Yap-dependent proliferation in postmitotic mammalian tissues.

The virome of Rhipicephalus, Dermacentor and Haemaphysalis ticks from Eastern Romania includes novel viruses with potential relevance for public health.

Prior infection by seasonal coronaviruses, as assessed by serology, does not prevent SARS-CoV-2 infection and disease in children, France, April to June 2020.

SARS-CoV-2 infection in schools in a northern French city: a retrospective serological cohort study in an area of high transmission, France, January to April 2020.

Deep Impact of Random Amplification and Library Construction Methods on Viral Metagenomics Results.

Bioinformatics program for PhD students 2020-2021

Identification of Umbre Orthobunyavirus as a Novel Zoonotic Virus Responsible for Lethal Encephalitis in 2 French Patients with Hypogammaglobulinemia.

Whole genome sequencing and phylogenetic characterization of a novel bat-associated picornavirus-like virus with an unusual genome organization.

Viromics on Honey-Baited FTA Cards as a New Tool for the Detection of Circulating Viruses in Mosquitoes.

RNA Viruses of Amblyomma variegatum and Rhipicephalus microplus and Cattle Susceptibility in the French Antilles.

Six Nearly Complete Genome Segments of a Novel Reovirus Identified in Laotian Batflies.

Insights into the Host Range, Genetic Diversity, and Geographical Distribution of Jingmenviruses.

Simulation data for the estimation of numerical constants for approximating pairwise evolutionary distances between amino acid sequences

A Novel Polycipiviridae Virus Identified in Pteropus lylei Stools.

RVDB-prot, a reference viral protein database and its HMM profiles.

Monitoring Silent Spillovers Before Emergence: A Pilot Study at the Tick/Human Interface in Thailand.

Expertise group: GIPhy – Genome Informatics and Phylogenetics

Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium

Bioinformatics and Biostatistics HUB

Large-scale genotyping of highly polymorphic loci by next-generation sequencing: how to overcome the challenges to reliably genotype individuals?

Bio++: efficient extensible libraries and tools for computational molecular evolution

TPMS: a set of utilities for querying collections of gene trees

Patterns of molecular evolution in dioecious and non-dioecious Silene

Pathogen discovery