Timeline

Riccardo Pellarin

Permanent Researcher

08 Jan 2024

publication

Interrogating Aptamer Chemical Space Through Modified Nucleotide Substitution Facilitated by Enzymatic DNA Synthesis

13 Sep 2022

publication

Building Protein Atomic Models from Cryo-EM Density Maps and Residue Co-Evolution.

11 Sep 2022

project

Energir: Energy dependent iron import by Gram-negative bacteria

22 Feb 2021

publication

Advanced In Vivo Cross-Linking Mass Spectrometry Platform to Characterize Proteome-Wide Protein Interactions.

30 Mar 2019

event

Department of Structural Biology and Chemistry seminar: Pr Michael P. Rout, A Hole New View: Structure-Function Mapping of the Nuclear Pore Complex

01 Jan 2019

publication

Bayesian Weighing of Electron Cryo-Microscopy Data for Integrative Structural Modeling

10 Apr 2018

publication

Simultaneous Determination of Protein Structure and Dynamics Using Cryo-Electron Microscopy

14 Mar 2018

publication

Integrative structure and functional anatomy of a nuclear pore complex

01 Jan 2018

publication

Integrative structure modeling with the Integrative Modeling Platform

17 Nov 2017

event

Simultaneous determination of protein structure and dynamics using cryo-electron microscopy

31 Oct 2017

software

Integrative Modelling Platform

14 Mar 2017

publication

Molecular Landscape of the Ribosome Pre-initiation Complex during mRNA Scanning: Structural Role for eIF3c and Its Control by eIF5

01 Dec 2016

publication

A Residue-Resolved Bayesian Approach to Quantitative Interpretation of Hydrogen-Deuterium Exchange from Mass Spectrometry: Application to Characterizing Protein-Ligand Interactions

17 Nov 2016

publication

Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform

10 Nov 2016

publication

Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform

01 Jun 2016

publication

Structure of Complement C3(H2O) Revealed By Quantitative Cross-Linking/Mass Spectrometry And Modeling

01 Sep 2015

publication

Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH

07 Jul 2015

project

ERC-2011-AdG BAYCELLS

07 Jul 2015

project

Bip:Bip

07 Jul 2015

project

Bacterial Transmembrane Signaling

11 May 2015

team

Structural Bioinformatics

28 Aug 2014

publication

Uncertainty in integrative structural modeling

28 Aug 2014

publication

Molecular architecture of the 40S⋅eIF1⋅eIF3 translation initiation complex

26 Aug 2014

publication

Structural characterization by cross-linking reveals the detailed architecture of a coatomer-related heptameric module from the nuclear pore complex

19 Aug 2014

publication

Molecular architecture of photoreceptor phosphodiesterase elucidated by chemical cross-linking and integrative modeling

19 Aug 2014

publication

Determining protein complex structures based on a Bayesian model of in vivo Förster resonance energy transfer (FRET) data

31 Jul 2014

publication

Cys-scanning disulfide crosslinking and bayesian modeling probe the transmembrane signaling mechanism of the histidine kinase, PhoQ

29 Jul 2014

publication

Molecular architecture and function of the SEA complex, a modulator of the TORC1 pathway

12 Apr 2014

publication

Elucidating the mechanism of substrate recognition by the bacterial Hsp90 molecular chaperone

01 Jan 2014

publication

Modeling of proteins and their assemblies with the Integrative Modeling Platform

31 Jan 2013

publication

Methylations of tryptophan-modified naphthoquinone affect its inhibitory potential toward Aβ aggregation

01 Sep 2012

publication

Optimization of designed armadillo repeat proteins by molecular dynamics simulations and NMR spectroscopy

16 Jul 2012

publication

Photocontrol of reversible amyloid formation with a minimal-design peptide

19 Sep 2011

publication

Structural basis for inhibiting β-amyloid oligomerization by a non-coded β-breaker-substituted endomorphin analogue

27 Oct 2010

publication

Amyloid fibril polymorphism is under kinetic control

14 Jun 2010

publication

Complete phenotypic recovery of an Alzheimer’s disease model by a quinone-tryptophan hybrid aggregation inhibitor

16 Sep 2009

publication

How does a simplified-sequence protein fold?

01 Apr 2009

publication

9,10-Anthraquinone hinders beta-aggregation: how does a small molecule interfere with Abeta-peptide amyloid fibrillation?

24 Dec 2008

publication

Amyloid aggregation on lipid bilayers and its impact on membrane permeability

14 Dec 2007

publication

Designed armadillo repeat proteins as general peptide-binding scaffolds: consensus design and computational optimization of the hydrophobic core

04 Oct 2007

publication

Pathways and intermediates of amyloid fibril formation

05 Jun 2006

publication

Interpreting the aggregation kinetics of amyloid peptides

01 Oct 2005

publication

Prediction of aggregation rate and aggregation-prone segments in polypeptide sequences

09 Sep 2005

publication

Organism complexity anti-correlates with proteomic beta-aggregation propensity

24 Nov 2004

publication

Membrane localization and flexibility of a lipidated ras peptide studied by molecular dynamics simulations

28 May 2004

publication

A little guide for advanced search:

Interrogating Aptamer Chemical Space Through Modified Nucleotide Substitution Facilitated by Enzymatic DNA Synthesis

Building Protein Atomic Models from Cryo-EM Density Maps and Residue Co-Evolution.

Energir: Energy dependent iron import by Gram-negative bacteria

Advanced In Vivo Cross-Linking Mass Spectrometry Platform to Characterize Proteome-Wide Protein Interactions.

Department of Structural Biology and Chemistry seminar: Pr Michael P. Rout, A Hole New View: Structure-Function Mapping of the Nuclear Pore Complex

Bayesian Weighing of Electron Cryo-Microscopy Data for Integrative Structural Modeling

Simultaneous Determination of Protein Structure and Dynamics Using Cryo-Electron Microscopy

Integrative structure and functional anatomy of a nuclear pore complex

Integrative structure modeling with the Integrative Modeling Platform

Simultaneous determination of protein structure and dynamics using cryo-electron microscopy

Integrative Modelling Platform

Molecular Landscape of the Ribosome Pre-initiation Complex during mRNA Scanning: Structural Role for eIF3c and Its Control by eIF5

A Residue-Resolved Bayesian Approach to Quantitative Interpretation of Hydrogen-Deuterium Exchange from Mass Spectrometry: Application to Characterizing Protein-Ligand Interactions

Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform

Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform

Structure of Complement C3(H2O) Revealed By Quantitative Cross-Linking/Mass Spectrometry And Modeling

Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH

ERC-2011-AdG BAYCELLS

Bip:Bip

Bacterial Transmembrane Signaling

Structural Bioinformatics

Uncertainty in integrative structural modeling

Molecular architecture of the 40S⋅eIF1⋅eIF3 translation initiation complex

Structural characterization by cross-linking reveals the detailed architecture of a coatomer-related heptameric module from the nuclear pore complex

Molecular architecture of photoreceptor phosphodiesterase elucidated by chemical cross-linking and integrative modeling

Determining protein complex structures based on a Bayesian model of in vivo Förster resonance energy transfer (FRET) data

Cys-scanning disulfide crosslinking and bayesian modeling probe the transmembrane signaling mechanism of the histidine kinase, PhoQ

Molecular architecture and function of the SEA complex, a modulator of the TORC1 pathway

Elucidating the mechanism of substrate recognition by the bacterial Hsp90 molecular chaperone

Modeling of proteins and their assemblies with the Integrative Modeling Platform

Methylations of tryptophan-modified naphthoquinone affect its inhibitory potential toward Aβ aggregation

Optimization of designed armadillo repeat proteins by molecular dynamics simulations and NMR spectroscopy

Photocontrol of reversible amyloid formation with a minimal-design peptide

Structural basis for inhibiting β-amyloid oligomerization by a non-coded β-breaker-substituted endomorphin analogue

Amyloid fibril polymorphism is under kinetic control

Complete phenotypic recovery of an Alzheimer’s disease model by a quinone-tryptophan hybrid aggregation inhibitor

How does a simplified-sequence protein fold?

9,10-Anthraquinone hinders beta-aggregation: how does a small molecule interfere with Abeta-peptide amyloid fibrillation?

Amyloid aggregation on lipid bilayers and its impact on membrane permeability

Designed armadillo repeat proteins as general peptide-binding scaffolds: consensus design and computational optimization of the hydrophobic core

Pathways and intermediates of amyloid fibril formation

Interpreting the aggregation kinetics of amyloid peptides

Prediction of aggregation rate and aggregation-prone segments in polypeptide sequences

Organism complexity anti-correlates with proteomic beta-aggregation propensity

Membrane localization and flexibility of a lipidated ras peptide studied by molecular dynamics simulations

The role of aromaticity, exposed surface, and dipole moment in determining protein aggregation rates