Timeline

Sarah Temmam

Research Engineer

26 Nov 2024

project

Pathogen discovery through clinical metagenomics

26 Nov 2024

project

ANR PREZODE AMAZED

22 Nov 2024

publication

Insights into the virome of Hyalomma marginatum in the Danube Delta: a major vector of Crimean-Congo hemorrhagic fever virus in Eastern Europe.

16 Nov 2023

publication

Virus Pop: Expanding viral databases by protein sequence simulation

15 Nov 2023

publication

Microseek: an innovative approach to unraveling clinical metagenomic secrets

08 Sep 2023

publication

Genotype and Phenotype Characterization of Rhinolophus sp. Sarbecoviruses from Vietnam: Implications for Coronavirus Emergence.

01 Sep 2023

publication

Comprehensive Characterization of Viral Diversity of Female Mosquitoes in Madagascar

29 Aug 2023

publication

Longitudinal Study of Viral Diversity Associated with Mosquito Species Circulating in Cambodia.

01 Jun 2023

publication

Acute tubulointerstitial nephritis with or without uveitis: a novel form of post-acute COVID-19 syndrome in children.

24 May 2023

publication

Virus Pop—Expanding Viral Databases by Protein Sequence Simulation

05 Apr 2023

publication

SARS‐CoV‐2‐related bat virus behavior in human‐relevant models sheds light on the origin of COVID‐19

13 Jan 2023

publication

A Search for Tick-Associated, Bronnoya-like Virus Spillover into Sheep

07 Oct 2022

software

Microseek: A Metagenomic Pipeline for Virus Diagnostic and Discovery

08 Sep 2022

publication

Microseek: A Protein-Based Metagenomic Pipeline for Virus Diagnostic and Discovery.

01 Jul 2022

publication

Seroprevalence of Crimean-Congo Hemorrhagic Fever Among Small Ruminants from Southern Romania.

01 Jul 2022

publication

Author Correction: Bat coronaviruses related to SARS-CoV-2 and infectious for human cells.

14 Apr 2022

publication

Bat coronaviruses related to SARS-CoV-2 and infectious for human cells.

13 Apr 2022

publication

Detection of Phenuiviridae, Chuviridae Members, and a Novel Quaranjavirus in Hard Ticks From Danube Delta.

01 Apr 2022

publication

De nouveaux coronavirus de chauve-souris similaires à SARS-CoV-2 éclairent l’origine de la pandémie de COVID-19

16 Feb 2022

publication

Discovery of bat coronaviruses close to SARS-CoV-2 and infectious for human cells.

01 Aug 2021

publication

Low seroprevalence of COVID-19 in Lao PDR, late 2020.

18 May 2021

publication

Identification of Umbre Orthobunyavirus as a Novel Zoonotic Virus Responsible for Lethal Encephalitis in 2 French Patients With Hypogammaglobulinemia

01 May 2021

publication

Arterial abnormalities identified in kidneys transplanted into children during the COVID-19 pandemic.

28 Apr 2021

publication

Une infection antérieure par des coronavirus saisonniers n’empêche pas la COVID-19 chez les enfants.

26 Apr 2021

publication

Faune sauvage et SARS-CoV-2 : exposition des animaux de zoo pendant la circulation du virus en France en 2020.

26 Apr 2021

publication

Identification d’un nouvel arbovirus neurotrope en France : le virus Umbre

11 Apr 2021

publication

The virome of Rhipicephalus, Dermacentor and Haemaphysalis ticks from Eastern Romania includes novel viruses with potential relevance for public health.

01 Apr 2021

publication

Prior infection by seasonal coronaviruses, as assessed by serology, does not prevent SARS-CoV-2 infection and disease in children, France, April to June 2020.

01 Apr 2021

publication

SARS-CoV-2 infection in schools in a northern French city: a retrospective serological cohort study in an area of high transmission, France, January to April 2020

01 Mar 2021

publication

Immunological and virological profile of children with chilblain-like lesions and SARS-CoV-2.

07 Feb 2021

publication

Deep Impact of Random Amplification and Library Construction Methods on Viral Metagenomics Results

02 Sep 2020

publication

A comparison of four serological assays for detecting anti–SARS-CoV-2 antibodies in human serum samples from different populations

01 Mar 2020

publication

Whole genome sequencing and phylogenetic characterization of a novel bat-associated picornavirus-like virus with an unusual genome organization

29 Feb 2020

publication

Viromics on Honey-Baited FTA Cards as a New Tool for the Detection of Circulating Viruses in Mosquitoes

26 Jan 2020

publication

RNA Viruses of Amblyomma variegatum and Rhipicephalus microplus and Cattle Susceptibility in the French Antilles

06 Jan 2020

team

Pathogen discovery

01 Jan 2020

publication

Absence of SARS-CoV-2 infection in cats and dogs in close contact with a cluster of COVID-19 patients in a veterinary campus.

14 Nov 2019

publication

Six Nearly Complete Genome Segments of a Novel Reovirus Identified in Laotian Batflies

06 Nov 2019

publication

Insights into the Host Range, Genetic Diversity, and Geographical Distribution of Jingmenviruses

11 Apr 2019

publication

A Novel Polycipiviridae Virus Identified in Pteropus lylei Stools.

01 Jan 2019

publication

Monitoring Silent Spillovers Before Emergence: A Pilot Study at the Tick/Human Interface in Thailand

01 Jan 2019

publication

RVDB-prot, a reference viral protein database and its HMM profiles [version 2; peer review: 2 approved]

01 Jan 2018

publication

Protocol for Generating Infectious RNA Viromes from Complex Biological Samples.

01 Aug 2016

publication

A new asfarvirus infecting amoebas discovered in hematophagous arthropods and their vertebrate hosts.

01 Aug 2016

publication

Zoonotic viruses: how to monitor their emergence?

11 Mar 2016

publication

Characterization of Viral Communities of Biting Midges and Identification of Novel Thogotovirus Species and Rhabdovirus Genus.

14 Feb 2016

publication

Screening for Viral Pathogens in African Simian Bushmeat Seized at A French Airport.

03 Feb 2016

publication

Viral metagenomics: are we missing the giants?

16 Dec 2015

publication

Faustovirus-Like Asfarvirus in Hematophagous Biting Midges and Their Vertebrate Hosts.

02 Oct 2015

publication

Host-Associated Metagenomics: A Guide to Generating Infectious RNA Viromes.

22 Sep 2014

publication

First molecular detection of Rickettsia africae in ticks from the Union of the Comoros.

10 Jun 2014

publication

Viral metagenomics on animals as a tool for the detection of zoonoses prior to human infection?

17 Oct 2013

publication

Describing the silent human virome with an emphasis on giant viruses.

11 Oct 2013

publication

Development of real-time RT-PCR for the detection of low concentrations of Rift Valley fever virus.

03 Dec 2012

publication

High prevalence of hepatitis E in humans and pigs and evidence of genotype-3 virus in swine, Madagascar.

01 Oct 2012

publication

Pathogenic Leptospira spp. in bats, Madagascar and Union of the Comoros.

01 Oct 2012

publication

Influenza A(H1N1)pdm09 virus in pigs, Réunion Island.

01 Oct 2012

publication

Adhesion of human pathogenic enteric viruses and surrogate viruses to inert and vegetal food surfaces.

12 Sep 2012

publication

Intense co-circulation of non-influenza respiratory viruses during the first wave of pandemic influenza pH1N1/2009: a cohort study in Reunion Island.

07 Sep 2012

publication

Identification of novel paramyxoviruses in insectivorous bats of the Southwest Indian Ocean.

27 Aug 2012

publication

Molecular evolutionary analysis of pH1N1 2009 influenza virus in Reunion Island, South West Indian Ocean region: a cohort study.

29 Sep 2011

publication

Pandemic influenza due to pH1N1/2009 virus: estimation of infection burden in Reunion Island through a prospective serosurvey, austral winter 2009.

22 Aug 2011

publication

Comparison of chlorine and peroxyacetic-based disinfectant to inactivate Feline calicivirus, Murine norovirus and Hepatitis A virus on lettuce.

01 Oct 2010

publication

A predictive microbiology approach for thermal inactivation of Hepatitis A virus in acidified berries.

01 Oct 2009

publication

Massilia virus, a novel Phlebovirus (Bunyaviridae) isolated from sandflies in the Mediterranean.

03 Apr 2009

publication

Development and validation of real-time one-step reverse transcription-PCR for the detection and typing of dengue viruses.

01 May 2008

publication

Sandfly fever Sicilian virus, Algeria.

01 Mar 2007

publication

Cocirculation of 2 genotypes of Toscana virus, southeastern France.

01 Jan 2007

publication

Long PCR Product Sequencing (LoPPS): a shotgun-based approach to sequence long PCR products.

01 Jan 2007

publication

Alkhurma hemorrhagic fever virus in Ornithodoros savignyi ticks.

01 Jan 2007

publication

A real-time RT-PCR method for the universal detection and identification of flaviviruses

01 Aug 2006

publication

Toscana virus RNA in Sergentomyia minuta files.

19 Apr 2006

publication

A little guide for advanced search:

Pathogen discovery through clinical metagenomics

ANR PREZODE AMAZED

Insights into the virome of Hyalomma marginatum in the Danube Delta: a major vector of Crimean-Congo hemorrhagic fever virus in Eastern Europe.

Virus Pop: Expanding viral databases by protein sequence simulation

Microseek: an innovative approach to unraveling clinical metagenomic secrets

Genotype and Phenotype Characterization of Rhinolophus sp. Sarbecoviruses from Vietnam: Implications for Coronavirus Emergence.

Comprehensive Characterization of Viral Diversity of Female Mosquitoes in Madagascar

Longitudinal Study of Viral Diversity Associated with Mosquito Species Circulating in Cambodia.

Acute tubulointerstitial nephritis with or without uveitis: a novel form of post-acute COVID-19 syndrome in children.

Virus Pop—Expanding Viral Databases by Protein Sequence Simulation

SARS‐CoV‐2‐related bat virus behavior in human‐relevant models sheds light on the origin of COVID‐19

A Search for Tick-Associated, Bronnoya-like Virus Spillover into Sheep

Microseek: A Metagenomic Pipeline for Virus Diagnostic and Discovery

Microseek: A Protein-Based Metagenomic Pipeline for Virus Diagnostic and Discovery.

Seroprevalence of Crimean-Congo Hemorrhagic Fever Among Small Ruminants from Southern Romania.

Author Correction: Bat coronaviruses related to SARS-CoV-2 and infectious for human cells.

Bat coronaviruses related to SARS-CoV-2 and infectious for human cells.

Detection of Phenuiviridae, Chuviridae Members, and a Novel Quaranjavirus in Hard Ticks From Danube Delta.

De nouveaux coronavirus de chauve-souris similaires à SARS-CoV-2 éclairent l’origine de la pandémie de COVID-19

Discovery of bat coronaviruses close to SARS-CoV-2 and infectious for human cells.

Low seroprevalence of COVID-19 in Lao PDR, late 2020.

Identification of Umbre Orthobunyavirus as a Novel Zoonotic Virus Responsible for Lethal Encephalitis in 2 French Patients With Hypogammaglobulinemia

Arterial abnormalities identified in kidneys transplanted into children during the COVID-19 pandemic.

Une infection antérieure par des coronavirus saisonniers n’empêche pas la COVID-19 chez les enfants.

Faune sauvage et SARS-CoV-2 : exposition des animaux de zoo pendant la circulation du virus en France en 2020.

Identification d’un nouvel arbovirus neurotrope en France : le virus Umbre

The virome of Rhipicephalus, Dermacentor and Haemaphysalis ticks from Eastern Romania includes novel viruses with potential relevance for public health.

Prior infection by seasonal coronaviruses, as assessed by serology, does not prevent SARS-CoV-2 infection and disease in children, France, April to June 2020.

SARS-CoV-2 infection in schools in a northern French city: a retrospective serological cohort study in an area of high transmission, France, January to April 2020

Immunological and virological profile of children with chilblain-like lesions and SARS-CoV-2.

Deep Impact of Random Amplification and Library Construction Methods on Viral Metagenomics Results

A comparison of four serological assays for detecting anti–SARS-CoV-2 antibodies in human serum samples from different populations

Whole genome sequencing and phylogenetic characterization of a novel bat-associated picornavirus-like virus with an unusual genome organization

Viromics on Honey-Baited FTA Cards as a New Tool for the Detection of Circulating Viruses in Mosquitoes

RNA Viruses of Amblyomma variegatum and Rhipicephalus microplus and Cattle Susceptibility in the French Antilles

Pathogen discovery

Absence of SARS-CoV-2 infection in cats and dogs in close contact with a cluster of COVID-19 patients in a veterinary campus.

Six Nearly Complete Genome Segments of a Novel Reovirus Identified in Laotian Batflies

Insights into the Host Range, Genetic Diversity, and Geographical Distribution of Jingmenviruses

A Novel Polycipiviridae Virus Identified in Pteropus lylei Stools.

Monitoring Silent Spillovers Before Emergence: A Pilot Study at the Tick/Human Interface in Thailand

RVDB-prot, a reference viral protein database and its HMM profiles [version 2; peer review: 2 approved]

Protocol for Generating Infectious RNA Viromes from Complex Biological Samples.

A new asfarvirus infecting amoebas discovered in hematophagous arthropods and their vertebrate hosts.

Zoonotic viruses: how to monitor their emergence?

Characterization of Viral Communities of Biting Midges and Identification of Novel Thogotovirus Species and Rhabdovirus Genus.

Screening for Viral Pathogens in African Simian Bushmeat Seized at A French Airport.

Viral metagenomics: are we missing the giants?

Faustovirus-Like Asfarvirus in Hematophagous Biting Midges and Their Vertebrate Hosts.

Host-Associated Metagenomics: A Guide to Generating Infectious RNA Viromes.

First molecular detection of Rickettsia africae in ticks from the Union of the Comoros.

Viral metagenomics on animals as a tool for the detection of zoonoses prior to human infection?

Describing the silent human virome with an emphasis on giant viruses.

Development of real-time RT-PCR for the detection of low concentrations of Rift Valley fever virus.

High prevalence of hepatitis E in humans and pigs and evidence of genotype-3 virus in swine, Madagascar.

Pathogenic Leptospira spp. in bats, Madagascar and Union of the Comoros.

Influenza A(H1N1)pdm09 virus in pigs, Réunion Island.

Adhesion of human pathogenic enteric viruses and surrogate viruses to inert and vegetal food surfaces.

Intense co-circulation of non-influenza respiratory viruses during the first wave of pandemic influenza pH1N1/2009: a cohort study in Reunion Island.

Identification of novel paramyxoviruses in insectivorous bats of the Southwest Indian Ocean.

Molecular evolutionary analysis of pH1N1 2009 influenza virus in Reunion Island, South West Indian Ocean region: a cohort study.

Pandemic influenza due to pH1N1/2009 virus: estimation of infection burden in Reunion Island through a prospective serosurvey, austral winter 2009.

Comparison of chlorine and peroxyacetic-based disinfectant to inactivate Feline calicivirus, Murine norovirus and Hepatitis A virus on lettuce.

A predictive microbiology approach for thermal inactivation of Hepatitis A virus in acidified berries.

Massilia virus, a novel Phlebovirus (Bunyaviridae) isolated from sandflies in the Mediterranean.

Development and validation of real-time one-step reverse transcription-PCR for the detection and typing of dengue viruses.

Sandfly fever Sicilian virus, Algeria.

Cocirculation of 2 genotypes of Toscana virus, southeastern France.

Long PCR Product Sequencing (LoPPS): a shotgun-based approach to sequence long PCR products.

Alkhurma hemorrhagic fever virus in Ornithodoros savignyi ticks.

A real-time RT-PCR method for the universal detection and identification of flaviviruses

Toscana virus RNA in Sergentomyia minuta files.

LoPPS: a long PCR product sequencing method for rapid characterisation of long amplicons.