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  • program_project
  • nrc
  • whocc
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  • software
  • tool
  • patent
  • Administrative Staff
  • Assistant Professor
  • Associate Professor
  • Clinical Research Assistant
  • Clinician Researcher
  • Department Manager
  • Full Professor
  • Graduate Student
  • Honorary Professor
  • Lab assistant
  • Non-permanent Researcher
  • Permanent Researcher
  • Pharmacist
  • PhD Student
  • Physician
  • Post-doc
  • Prize
  • Project Manager
  • Research Associate
  • Research Engineer
  • Retired scientist
  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Deputy Head of Facility
  • Director of Center
  • Director of Department
  • Director of Institute
  • Director of National Reference Center
  • Group Leader
  • Head of Facility
  • Head of Operations
  • Head of Structure
  • Honorary President of the Departement
  • Labex Coordinator
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Scientific Fields
Diseases
Organisms
Applications
Technique
Starting Date
30
Jun 2022
Status
Ongoing
Members
3
Structures
7

About

Palmari is a Python package allowing one to process PALM (photo-activated localization microscopy) movies in order to extract trajectories. The documentation can be found online : https://palmari.readthedocs.io/en/latest/

It has two entry points :

  • it comes as a plugin of the Napari viewer (https://napari.org/)
  • it has a programmatic Python interface so as to be run headlessly. Simple commands allow batches of experiment to be processed with the same protocol, exploiting at best the computing resources available.

Fundings