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© Research
Publication : The Journal of general virology

Genomic characterization of Sebokele virus 1 (SEBV1) reveals a new candidate species among the genus Parechovirus

Team: Biomics
Team: Lyssavirus epidemiology and neuropathology
Team: Bioinformatics and Biostatistics HUB
Team: Expertise group: Genomics
Member: Christiane Bouchier
Member: Corinne Maufrais
Member: Laurent Dacheux
Scientific Fields
Diseases
Organisms
Applications
Technique

Published in The Journal of general virology - 17 Apr 2013

Joffret ML, Bouchier C, Grandadam M, Zeller H, Maufrais C, Bourhy H, Despres P, Delpeyroux F, Dacheux L

Link to Pubmed [PMID] – 23596267

J. Gen. Virol. 2013 Jul;94(Pt 7):1547-53

We determined the genomic features and the taxonomic classification of Sebokele virus 1 (SEBV1), a previously unclassified arbovirus isolated in 1972 from rodents collected in Botambi, Central African Republic. The complete genome sequence was obtained using a deep sequencing approach (Illumina technology) and dedicated bioinformatics workflows for data analysis. Molecular analysis identified SEBV1 as a picornavirus, most closely related to Ljungan viruses of the genus Parechovirus. The genome has a typical Ljungan virus-like organization, including the presence of two unrelated 2A protein motifs. Phylogenetic analysis confirmed that SEBV1 belongs to the parechovirus phylogroup and was most closely related to the Ljungan virus species. However, it appeared clearly distinct from all members of this phylogroup, suggesting that it represents a novel species of the genus Parechovirus.