• 2024
  Kämpfer P, Glaeser SP, McInroy JA, Busse HJ, Clermont D, Criscuolo A, Description of Cohnella rhizoplanae sp. nov., isolated from the root surface of soybean (Glycine max)., Antonie Van Leeuwenhoek 2024 Dec; 118(2): 41.
• 2024
  Boutroux M, Favre-Rochex S, Gorgette O, Touak G, Mühle E, Bouchier C, Chesneau O, Veyrier FJ, Clermont D, Rahi P, Neisseria leonii sp. nov., isolated from the nose, lung, and liver of rabbits., Int J Syst Evol Microbiol 2024 Jul; 74(7): .
• 2024
  Boutroux M, Chiarelli A, Ferrari ML, Chesneau O, Clermont D, Betsou F, A Ranking Tool for “Category Killer” Microbial Biobanks., Biopreserv Biobank 2024 Jun; (): .
• 2024
  Ferrari ML, Chesneau O, Clermont D, Rahi P, Mistou MY, Portier P, Betsou F, Clarification on the implementation of the Nagoya Protocol in France for the access and sharing of benefits arising from the utilization of microbial genetic resources., Int J Syst Evol Microbiol 2024 Mar; 74(3): .
• 2024
  Arahal D, Bisgaard M, Christensen H, Clermont D, Dijkshoorn L, Duim B, Emler S, Figge M, Göker M, Moore ERB, Nemec A, Nørskov-Lauritsen N, Nübel U, On SLW, Vandamme P, Ventosa A, The best of both worlds: a proposal for further integration of Candidatus names into the International Code of Nomenclature of Prokaryotes., Int J Syst Evol Microbiol 2024 Jan; 74(1): .
• 2023
  Rahi P, Mühle E, Scandola C, Touak G, Clermont D, Genome sequence-based identification of Enterobacter strains and description of Enterobacter pasteurii sp. nov., Microbiol Spectr 2024 Jan; 12(1): e0315023.
• 2023
  Planchais C, Molinos-Albert LM, Rosenbaum P, Hieu T, Kanyavuz A, Clermont D, Prazuck T, Lefrou L, Dimitrov JD, Hüe S, Hocqueloux L, Mouquet H, HIV-1 treatment timing shapes the human intestinal memory B-cell repertoire to commensal bacteria., Nat Commun 2023 Oct; 14(1): 6326.
• 2023
  Elena Buelow, Catherine Dauga, Claire Carrion, Hugo Mathé-Hubert, Sophia Achaibou, Margaux Gaschet, Thomas Jové, Olivier Chesneau, Sean Kennedy, Marie-Cecile Ploy, Sandra da Re, Christophe Dagot, Hospital and urban wastewaters shape the matrix and active resistome of environmental biofilms Les eaux usées hospitalières et urbaines façonnent la matrice et le résistome actif des biofilms environnementaux, Water Research, 2023, 244, pp.120408. ⟨10.1016/j.watres.2023.120408⟩.
• 2023
  Hussain M, Thakur RK, Khazir J, Ahmed S, Khan MI, Rahi P, Peer LA, Shanmugam PV, Kaur S, Raina SN, Reshi ZA, Sehgal D, Rajpal VR, Mir BA, Traditional uses, Phytochemistry, Pharmacology, and Toxicology of the Genus Artemisia L. (Asteraceae): A High-value Medicinal Plant., Curr Top Med Chem 2024 ; 24(4): 301-342.
• 2023
  Han CJ, Chen WM, Chen HK, Liaw SJ, Mühle E, Clermont D, Shelomi M, Corrigendum: Chryseobacterium oryctis sp. nov., isolated from the gut of the beetle Oryctes rhinoceros, and Chryseobacterium kimseyorum sp. nov., isolated from a stick insect rearing cage., Int J Syst Evol Microbiol 2023 Aug; 73(8): .
• 2023
  Kämpfer P, Lipski A, Lamothe L, Clermont D, Criscuolo A, McInroy JA, Glaeser SP, Paenibacillus plantiphilus sp. nov. from the plant environment of Zea mays, Antonie Van Leeuwenhoek 2023 Jun; (): .
• 2023
  Chaudhari D, Kiran S, Choudhary A, Silveira K, Narwade N, Dhotre D, Khazir J, Mir BA, Shouche YS, Rahi P, Prokaryotic communities adapted to microhabitats on the Indian lotus (Nelumbo nucifera) growing in the high-altitude urban Dal Lake., Int Microbiol 2023 May; 26(2): 257-267.
• 2023
  Jihed Hsouna, Houda Ilahi, Jia-Cheng Han, Takwa Gritli, Walid Ellouze, Xiao Xia Zhang, Maroua Mansouri, Praveen Rahi, Mustapha Missbah El Idrissi, Mouad Lamrabet, M'Hamed Oubla, Pierre Emmanuel Courty, Daniel Wipf, James T Tambong, Bacem Mnasri, Rhizobium acaciae sp. nov., a new nitrogen-fixing symbiovar isolated from root nodules of Acacia saligna in Tunisia, International Journal of Systematic and Evolutionary Microbiology, 2023, 73, pp.art. 005900. ⟨10.1099/ijsem.0.005900⟩.
• 2023
  Chopra A, Mongad D, Satpute S, Mazumder PB, Rahi P, Quorum sensing activities and genomic insights of plant growth-promoting rhizobacteria isolated from Assam tea., World J Microbiol Biotechnol 2023 Apr; 39(6): 160.
• 2023
  Kämpfer P, Lipski A, McInroy JA, Clermont D, Lamothe L, Glaeser SP, Criscuolo A, , Paenibacillus auburnensis sp. nov. and Paenibacillus pseudetheri sp. nov., isolated from the rhizosphere of Zea mays, Int J Syst Evol Microbiol 2023 Apr; 73(4): .
• 2023
  Cho GS, Mühle E, Clermont D, Franz CMAP, Besaury L, Serratia silvae sp. nov., Isolated from Forest Soil., Curr Microbiol 2023 Feb; 80(4): 114.
• 2023
  Mourer T, El Ghalid M, Pehau-Arnaudet G, Kauffmann B, Loquet A, Brûlé S, Cabral V, d'Enfert C, Bachellier-Bassi S, The Pga59 cell wall protein is an amyloid forming protein involved in adhesion and biofilm establishment in the pathogenic yeast Candida albicans., NPJ Biofilms Microbiomes 2023 Jan; 9(1): 6.
• 2022
  Kämpfer P, Glaeser SP, McInroy JA, Clermont D, Lipski A, Criscuolo A, Neobacillus rhizosphaerae sp. nov., isolated from the rhizosphere, and reclassification of Bacillus dielmonensis as Neobacillus dielmonensis comb. nov., Int J Syst Evol Microbiol 2022 Nov; 72(11): .
• 2022
  Sharma G, Islam ST, Rahi P, Silby MW, Giovannelli D, Welander PV, Ehling-Schulz M, Chaudhry V, Molloy E, Hertweck C, Mundra S, Kalia VC, Lal R, Singh Y, Ruby E, Weigel C, Kolter R, Reply to Oren et al., “New Phylum Names Harmonize Prokaryotic Nomenclature”., mBio 2022 Oct; 13(5): e0232322.
• 2022
  Kämpfer P, Glaeser SP, Lipski A, McInroy JA, Clermont D, Criscuolo A, Sutcliffiella rhizosphaerae sp. nov. isolated from roots, Int J Syst Evol Microbiol 2022 Oct; 72(10): .
• 2022
  Peter Kämpfer, André Lipski, Lucie Lamothe, Dominique Clermont, Alexis Criscuolo, John A. McInroy, Stefanie P. Glaeser , Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root, Arch Microbiol. 2022 Sep;204(10):630.
• 2022
  Skóra M, Zając M, Kwit R, Skarżyńska M, Pasim P, Mikos-Wojewoda E, Bomba A, Giza A, Chesneau O, Hendriksen RS, Wasyl D, Draft Genome Sequences of Six Isolates of the Bacillus cereus Group Isolated from Pet Reptiles., Microbiol Resour Announc 2022 Sep; 11(9): e0038522.
• 2022
  Cassarini M, Rémond C, Mühle E, Clermont D, Besaury L, , Streptomyces durocortorensis sp. nov., isolated from oak rhizosphere., Int J Syst Evol Microbiol 2022 Sep; 72(9): .
• 2022
  Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S, , A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies., Nat Commun 2022 Jul; 13(1): 3807.
• 2022
  Kämpfer P, Lipski A, McInroy JA, Clermont D, Criscuolo A, Glaeser SP, , Bacillus rhizoplanae sp. nov. from maize roots., Int J Syst Evol Microbiol 2022 Jul; 72(7): .
• 2022
  Islam K, Huque R, Saif-Ur-Rahman KM, Ehtesham Kabir ANM, Enayet Hussain AHM, Implementation status of non-communicable disease control program at primary health care level in Bangladesh: Findings from a qualitative research., Public Health Pract (Oxf) 2022 Jun; 3(): 100271.
• 2022
  Kämpfer P, Glaeser SP, Busse HJ, McInroy JA, Clermont D, Criscuolo A, , Pseudoneobacillus rhizosphaerae gen. nov., sp. nov., isolated from maize root rhizosphere., Int J Syst Evol Microbiol 2022 May; 72(5): .
• 2022
  Schneider XT, Stroil BK, Tourapi C, Rebours C, Gaudêncio SP, Novoveska L, Vasquez MI, Responsible Research and Innovation Framework, the Nagoya Protocol and Other European Blue Biotechnology Strategies and Regulations: Gaps Analysis and Recommendations for Increased Knowledge in the Marine Biotechnology Community., Mar Drugs 2022 Apr; 20(5): .
• 2022
  Chaudhary A, Ketkar OA, Irfan S, Rana V, Rahi P, Deshmukh R, Kaur J, Dhar H, Genomic Insights into Omega-3 Polyunsaturated Fatty Acid Producing Shewanella sp. N2AIL from Fish Gut., Biology (Basel) 2022 Apr; 11(5): .
• 2022
  Khairnar M, Hagir A, Parmar K, Sayyed RZ, James EK, Rahi P, Phylogenetic diversity and plant growth-promoting activities of rhizobia nodulating fenugreek (Trigonella foenum-graecum Linn.) cultivated in different agroclimatic regions of India., FEMS Microbiol Ecol 2022 Mar; 98(2): .
• 2022
  Yassine I, Lefèvre S, Hansen EE, Ruckly C, Carle I, Lejay-Collin M, Fabre L, Rafei R, Clermont D, de la Gandara MP, Dabboussi F, Thomson NR, Weill FX, , Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing., Nat Commun 2022 Jan; 13(1): 551.
• 2022
  Haenni M, Dagot C, Chesneau O, Bibbal D, Labanowski J, Vialette M, Bouchard D, Martin-Laurent F, Calsat L, Nazaret S, Petit F, Pourcher AM, Togola A, Bachelot M, Topp E, Hocquet D, Environmental contamination in a high-income country (France) by antibiotics, antibiotic-resistant bacteria, and antibiotic resistance genes: Status and possible causes., Environ Int 2022 Jan; 159(): 107047.
• 2022
  Uqab B, Nazir R, Ganai BA, Rahi P, In vitro Sequestration of Molecular and Mass Spectra Characterized Metallophilic Cadmium Tolerant Bacteria for Sustainable Agriculture., Front Microbiol 2022 ; 13(): 845853.
• 2021
  Kämpfer P, McInroy JA, Clermont D, Neumann-Schaal M, Criscuolo A, Busse HJ, Glaeser SP, , Leucobacter soli sp. nov., from soil amended with humic acid., Int J Syst Evol Microbiol 2021 Dec; 71(12): .
• 2021
  Besaury L, Martinet L, Mühle E, Clermont D, Rémond C, , Streptomyces silvae sp. nov., isolated from forest soil., Int J Syst Evol Microbiol 2021 Dec; 71(12): .
• 2021
  Rahi P, Regulating access can restrict participation in reporting new species and taxa., Nat Microbiol 2021 Dec; 6(12): 1469-1470.
• 2021
  Kämpfer P, Busse HJ, Clermont D, Criscuolo A, Glaeser SP, , Devosia equisanguinis sp. nov., isolated from horse blood., Int J Syst Evol Microbiol 2021 Nov; 71(11): .
• 2021
  Kämpfer P, Busse HJ, McInroy JA, Clermont D, Criscuolo A, Glaeser SP, , Paenibacillus allorhizosphaerae sp. nov., from soil of the rhizosphere of Zea mays., Int J Syst Evol Microbiol 2021 Oct; 71(10): .
• 2021
  Dar MA, Dhole NP, Xie R, Pawar KD, Ullah K, Rahi P, Pandit RS, Sun J, Valorization Potential of a Novel Bacterial Strain, Bacillus altitudinis RSP75, towards Lignocellulose Bioconversion: An Assessment of Symbiotic Bacteria from the Stored Grain Pest, Tribolium castaneum., Microorganisms 2021 Sep; 9(9): .
• 2021
  Rahi P, Khairnar M, Hagir A, Narayan A, Jain KR, Madamwar D, Pansare A, Shouche Y, Peteryoungia gen. nov. with four new species combinations and description of Peteryoungia desertarenae sp. nov., and taxonomic revision of the genus Ciceribacter based on phylogenomics of Rhizobiaceae., Arch Microbiol 2021 Aug; 203(6): 3591-3604.
• 2021
  Kämpfer P, Glaeser SP, McInroy JA, Clermont D, Criscuolo A, Busse HJ, , Pseudomonas carbonaria sp. nov., isolated from charcoal., Int J Syst Evol Microbiol 2021 Apr; 71(4): .
• 2021
  Young JPW, Moeskjær S, Afonin A, Rahi P, Maluk M, James EK, Cavassim MIA, Rashid MH, Aserse AA, Perry BJ, Wang ET, Velázquez E, Andronov EE, Tampakaki A, Flores Félix JD, Rivas González R, Youseif SH, Lepetit M, Boivin S, Jorrin B, Kenicer GJ, Peix Á, Hynes MF, Ramírez-Bahena MH, Gulati A, Tian CF, Defining the Rhizobium leguminosarum Species Complex., Genes (Basel) 2021 Jan; 12(1): .
• 2020
  Kämpfer P, Irgang R, Glaeser SP, Busse HJ, Criscuolo A, Clermont D, Avendaño-Herrera R, , Flavobacterium salmonis sp. nov. isolated from Atlantic salmon (Salmo salar) and formal proposal to reclassify Flavobacterium spartansii as a later heterotypic synonym of Flavobacterium tructae., Int J Syst Evol Microbiol 2020 Dec; 70(12): 6147-6154.
• 2020
  Chaudhari DS, Dhotre DP, Jani K, Sharma A, Singh Y, Shouche YS, Rahi P, Bacterial Communities Associated with the Biofilms Formed in High-Altitude Brackish Water Pangong Tso Located in the Himalayan Plateau., Curr Microbiol 2020 Dec; 77(12): 4072-4084.
• 2020
  Mühle E, Abry C, Leclerc P, Goly GM, Criscuolo A, Busse HJ, Kämpfer P, Bernardet JF, Clermont D, Chesneau O, , Flavobacterium bizetiae sp. nov., isolated from diseased freshwater fish in Canada at the end of the 1970s., Int J Syst Evol Microbiol 2020 Nov; (): .
• 2020
  Ramezani M, Pourmohyadini M, Nikou MM, Makzum S, Schumann P, Clermont D, Criscuolo A, Amoozegar MA, Kämpfer P, Spröer C, , Halomonas lysinitropha sp. nov., a novel halophilic bacterium isolated from a hypersaline wetland., Int J Syst Evol Microbiol 2020 Oct; (): .
• 2020
  Kämpfer P, Glaeser SP, McInroy JA, Xu J, Busse HJ, Clermont D, Criscuolo A, , Flavobacterium panici sp. nov. isolated from the rhizosphere of the switchgrass Panicum virgatum., Int J Syst Evol Microbiol 2020 Oct; (): .
• 2020
  Le Guern AS, Savin C, Angermeier H, Brémont S, Clermont D, Mühle E, Orozova P, Najdenski H, Pizarro-Cerdá J, , Yersinia artesiana sp. nov., Yersinia proxima sp. nov., Yersinia alsatica sp. nov., Yersina vastinensis sp. nov., Yersinia thracica sp. nov. and Yersinia occitanica sp. nov., isolated from humans and animals., Int J Syst Evol Microbiol 2020 Oct; 70(10): 5363-5372.
• 2020
  Li Q, Pellegrino J, Lee DJ, Tran AA, Chaires HA, Wang R, Park JE, Ji K, Chow D, Zhang N, Brilot AF, Biel JT, van Zundert G, Borrelli K, Shinabarger D, Wolfe C, Murray B, Jacobson MP, Mühle E, Chesneau O, Fraser JS, Seiple IB, , Synthetic group A streptogramin antibiotics that overcome Vat resistance., Nature 2020 10; 586(7827): 145-150.
• 2020
  Dupré M, Duchateau M, Malosse C, Borges-Lima D, Calvaresi V, Podglajen I, Clermont D, Rey M, Chamot-Rooke J, , Optimization of a Top-Down Proteomics Platform for Closely Related Pathogenic Bacterial Discrimination., J Proteome Res 2020 Oct; (): .
• 2020
  Rahi P, Giram P, Chaudhari D, diCenzo GC, Kiran S, Khullar A, Chandel M, Gawari S, Mohan A, Chavan S, Mahajan B, Rhizobium indicum sp. nov., isolated from root nodules of pea (Pisum sativum) cultivated in the Indian trans-Himalayas., Syst Appl Microbiol 2020 Sep; 43(5): 126127.
• 2020
  Uqab B, Nazir R, Ahmad Ganai B, Rahi P, Rehman S, Farooq S, Dar R, Parray JA, Fahad Al-Arjani Al-Arjani AB, Tabassum B, Fathi Abd Allah E, MALDI-TOF-MS and 16S rRNA characterization of lead tolerant metallophile bacteria isolated from saffron soils of Kashmir for their sequestration potential., Saudi J Biol Sci 2020 Aug; 27(8): 2047-2053.
• 2020
  Gujarati S, Chaudhari D, Hagir A, Khairnar M, Shouche Y, Rahi P, Klebsiella indica sp. nov., isolated from the surface of a tomato., Int J Syst Evol Microbiol 2020 May; 70(5): 3278-3286.
• 2020
  García-Fraile P, Spröer C, Chesneau O, Criscuolo A, Lang E, Clermont D, , Serratia vespertilionis (García-Fraile et al. 2015) is a later heterotypic synonym of Serratia ficaria (Grimont et al. 1981)., Int J Syst Evol Microbiol 2020 Mar; 70(3): 1961-1962.
• 2020
  Kämpfer P, Busse HJ, Schumann P, Criscuolo A, Clermont D, Irgang R, Poblete-Morales M, Glaeser SP, Avendaño-Herrera R, , Arthrobacter ulcerisalmonis sp. nov., isolated from an ulcer of a farmed Atlantic salmon (Salmo salar), and emended description of the genus Arthrobacter sensu lato., Int J Syst Evol Microbiol 2020 Mar; 70(3): 1963-1968.
• 2020
  Chaudhari D, Rangappa K, Das A, Layek J, Basavaraj S, Kandpal BK, Shouche Y, Rahi P, Pea (Pisum sativum l.) Plant Shapes Its Rhizosphere Microbiome for Nutrient Uptake and Stress Amelioration in Acidic Soils of the North-East Region of India., Front Microbiol 2020 ; 11(): 968.
• 2020
  Pote ST, Sonawane MS, Rahi P, Shah SR, Shouche YS, Patole MS, Thakar MR, Sharma R, Distribution of Pathogenic Yeasts in Different Clinical Samples: Their Identification, Antifungal Susceptibility Pattern, and Cell Invasion Assays., Infect Drug Resist 2020 ; 13(): 1133-1145.
• 2020
  Chopra A, Bobate S, Rahi P, Banpurkar A, Mazumder PB, Satpute S, Pseudomonas aeruginosa RTE4: A Tea Rhizobacterium With Potential for Plant Growth Promotion and Biosurfactant Production., Front Bioeng Biotechnol 2020 ; 8(): 861.
• 2019
  Ousalem F, Singh S., Chesneau O, Hunt JF, Boël G., ABC-F proteins in mRNA translation and antibiotic resistance., Res. Microbiol. 2019 Nov - Dec;170(8):435-447.
• 2019
  Bisgaard M, Christensen H, Clermont D, Dijkshoorn L, Janda JM, Moore ERB, Nemec A, Nørskov-Lauritsen N, Overmann J, Reubsaet FAG, , The use of genomic DNA sequences as type material for valid publication of bacterial species names will have severe implications for clinical microbiology and related disciplines., Diagn Microbiol Infect Dis 2019 Sep; 95(1): 102-103.
• 2019
  Washetine K, Heeke S, Ribeyre C, Bourreau C, Normand C, Blons H, Laurent-Puig P, Mulot C, Clermont D, David M, Clément B, Dagher G, Hofman P., DNAshell Protects DNA Stored at Room Temperature for Downstream Next-Generation Sequencing Studies., Biopreserv Biobank. 2019 Aug;17(4):352-354.
• 2019
  Kämpfer P, Busse HJ, McInroy JA, Criscuolo A, Clermont D, Glaeser SP, , Xinfangfangia humi sp. nov., isolated from soil amended with humic acid., Int J Syst Evol Microbiol 2019 Jul; 69(7): 2070-2075.
• 2019
  Kämpfer P, Busse HJ, Galatis H, Criscuolo A, Clermont D, Bizet C, Glaeser SP, , Paracoccus haematequi sp. nov., isolated from horse blood., Int J Syst Evol Microbiol 2019 Jun; 69(6): 1682-1688.
• 2019
  Kämpfer P, Busse HJ, Criscuolo A, Bizet C, Clermont D, McInroy JA, Glaeser SP, , Pigmentiphaga humi sp. nov., isolated from soil amended with humic acid., Int J Syst Evol Microbiol 2019 Jun; 69(6): 1573-1578.
• 2019
  Kämpfer P, Bizet C, Clermont D, Criscuolo A, Kloepper LN, Duncan MB, McInroy JA, Kloepper JW, Schumann P, Glaeser SP, , Filibacter tadaridae sp. nov., isolated from within a guano pile from a colony of Mexican free-tailed bats Tadarida brasiliensis., Int J Syst Evol Microbiol 2019 May; 69(5): 1438-1442.
• 2019
  Kämpfer P, Busse HJ, Galatis H, Criscuolo A, Clermont D, Bizet C, Glaeser SP., Paracoccus haematequi sp. nov., isolated from horse blood., Int. J. Syst. Evol. Microbiol. 2019 Jun;69(6):1682-1688.
• 2019
  Kämpfer P, Bizet C, Clermont D, Criscuolo A, Kloepper LN, Duncan MB, McInroy JA, Kloepper JW, Schumann P, Glaeser SP., Filibacter tadaridae sp. nov., isolated from within a guano pile from a colony of Mexican free-tailed bats Tadarida brasiliensis., Int J Syst Evol Microbiol. 2019 May;69(5):1438-1442.
• 2019
  Nemec A, Radolfová-Křížová L, Maixnerová M, Nemec M, Clermont D, Bzdil J, Ježek P, Španělová P, , Revising the taxonomy of the Acinetobacter lwoffii group: The description of Acinetobacter pseudolwoffii sp. nov. and emended description of Acinetobacter lwoffii., Syst Appl Microbiol 2019 Mar; 42(2): 159-167.
• 2018
  Nemec A, Radolfová-Křížová L, Maixnerová M, Nemec M, Clermont D, Bzdil J, Ježek P, Španělová P, Revising the taxonomy of the Acinetobacter lwoffii group: The description of Acinetobacter pseudolwoffii sp. nov. and emended description of Acinetobacter lwoffii, Syst. Appl. Microbiol. 2018 Oct.
• 2018
  Clermont D, Bimet F, Conservation des bactéries et de leur acide désoxyribonucléique, Précis de Bactériologie Clinique. Troisième édition. Ed ESKA, 2018, 458-466.
• 2018
  Criscuolo A, Chesneau O, Clermont D, Bizet C, , Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Genomovar III Strain PH-97028 (=CIP 109753)., Genome Announc 2018 Apr; 6(14): .
• 2018
  Nicholson AC, Gulvik CA, Whitney AM, Humrighouse BW, Graziano J, Emery B, Bell M, Loparev V, Juieng P, Gartin J, Bizet C, Clermont D, Criscuolo A, Brisse S, McQuiston JR, , Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov., Antonie Van Leeuwenhoek 2018 Jan; 111(1): 55-72.
• 2017
  Christo-Foroux E, Vallaeys T, Loux V, Dassa E, Deutscher J, Wandersman C, Livernois A, Hot C, Criscuolo A, Dauga C, Clermont D, Chesneau O, , Manual and expert annotation of the nearly complete genome sequence of Staphylococcus sciuri strain ATCC 29059: A reference for the oxidase-positive staphylococci that supports the atypical phenotypic features of the species group., Syst Appl Microbiol 2017 Oct; 40(7): 401-410.
• 2017
  Hurtado-Ortiz R, Nazimoudine A, Criscuolo A, Hugon P, Mornico D, Brisse S, Bizet C, Clermont D, , Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter., Int J Syst Evol Microbiol 2017 Sep; 67(9): 3192-3197.
• 2017
  Perrin A, Larsonneur E, Nicholson AC, Edwards DJ, Gundlach KM, Whitney AM, Gulvik CA, Bell ME, Rendueles O, Cury J, Hugon P, Clermont D, Enouf V, Loparev V, Juieng P, Monson T, Warshauer D, Elbadawi LI, Walters MS, Crist MB, Noble-Wang J, Borlaug G, Rocha EPC, Criscuolo A, Touchon M, Davis JP, Holt KE, McQuiston JR, Brisse S, , Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain., Nat Commun 2017 05; 8(): 15483.
• 2017
  Chewapreecha C, Holden MT, Vehkala M, Välimäki N, Yang Z, Harris SR, Mather AE, Tuanyok A, De Smet B, Le Hello S, Bizet C, Mayo M, Wuthiekanun V, Limmathurotsakul D, Phetsouvanh R, Spratt BG, Corander J, Keim P, Dougan G, Dance DA, Currie B, Parkhill J, Peacock SJ., Global and regional dissemination and evolution of Burkholderia pseudomallei, Nat Microbiol. 2017 Jan 23;2:16263. doi: 10.1038/nmicrobiol.2016.263.
• 2017
  Ribeiro TG, Clermont D, Branquinho R, Machado E, Peixe L, Brisse S, , Citrobacter europaeus sp. nov., isolated from water and human faecal samples., Int J Syst Evol Microbiol 2017 Jan; 67(1): 170-173.
• 2016
  Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Le Hello S, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LA, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PA, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX, Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1, Nat Microbiol 2016 10;1(11):16209.
• 2016
  Tiwari S, Jamal SB, Oliveira LC, Clermont D, Bizet C, Mariano D, de Carvalho PV, Souza F, Pereira FL, de Castro Soares S, Guimarães LC, Dorella F, Carvalho A, Leal C, Barh D, Figueiredo H, Hassan SS, Azevedo V, Silva A, , Whole-Genome Sequence of Corynebacterium auriscanis Strain CIP 106629 Isolated from a Dog with Bilateral Otitis from the United Kingdom., Genome Announc 2016 Aug; 4(4): .
• 2016
  Clermont D, Bizet C, Kostrzewa M, MALDI-TOF MS for Environmental Analysis, Microbiome Research as a Tool for Biological Resource Centres in MALDI-TOF Mass Spectrometry in Microbiology, Caister Academic Press, Kostrzewa M, Schubert S.
• 2016
  Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Le Hello S, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LA, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PA, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX, , Global phylogeography and evolutionary history of Shigella dysenteriae type 1., Nat Microbiol 2016 03; 1(): 16027.
• 2015
  Dominique Clermont, Maite Gomard, Sylviane Hamon, Isabelle Bonne, José-Carlos Fernandez, Richard Wheeler, Christian Malosse, Julia Chamot-Rooke, Simonetta Gribaldo, Ivo Gomperts Boneca, Chantal Bizet, Paenibacillus faecis sp. nov., isolated from human faeces, International Journal of Systematic and Evolutionary Microbiology, 2015, 65 (12), pp.4621-4626. ⟨10.1099/ijsem.0.000622⟩.
• 2015
  Clermont D, Motreff L, Passet V, Fernandez JC, Bizet C, Brisse S, , Multilocus sequence analysis of the genus Citrobacter and description of Citrobacter pasteurii sp. nov., Int J Syst Evol Microbiol 2015 May; 65(Pt 5): 1486-1490.
• 2015
  Peiren J, Buyse J, De Vos P, Lang E, Clermont D, Hamon S, Bégaud E, Bizet C, Pascual J, Ruvira MA, Macián MC, Arahal DR, Improving survival and storage stability of bacteria recalcitrant to freeze-drying: a coordinated study by European culture collections, Appl. Microbiol. Biotechnol. 2015 Apr;99(8):3559-71.
• 2015
  Da Cunha V, Davies MR, Douarre PE, Rosinski-Chupin I, Margarit I, Spinali S, Perkins T, Lechat P, Dmytruk N, Sauvage E, Ma L, Romi B, Tichit M, Lopez-Sanchez MJ, Descorps-Declere S, Souche E, Buchrieser C, Trieu-Cuot P, Moszer I, Clermont D, Maione D, Bouchier C, McMillan DJ, Parkhill J, Telford JL, Dougan G, Walker MJ, Holden MT, Poyart C, Glaser P, Corrigendum: Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline, Nat Commun 2015 Jan;6:6108.
• 2014
  Touchon M, Cury J, Yoon EJ, Krizova L, Cerqueira GC, Murphy C, Feldgarden M, Wortman J, Clermont D, Lambert T, Grillot-Courvalin C, Nemec A, Courvalin P, Rocha EP, , The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences., Genome Biol Evol 2014 Oct; 6(10): 2866-82.
• 2014
  Da Cunha V, Davies MR, Douarre PE, Rosinski-Chupin I, Margarit I, Spinali S, Perkins T, Lechat P, Dmytruk N, Sauvage E, Ma L, Romi B, Tichit M, Lopez-Sanchez MJ, Descorps-Declere S, Souche E, Buchrieser C, Trieu-Cuot P, Moszer I, Clermont D, Maione D, Bouchier C, McMillan DJ, Parkhill J, Telford JL, Dougan G, Walker MJ, , Holden MTG, Poyart C, Glaser P, , Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline., Nat Commun 2014 Aug; 5(): 4544.
• 2014
  Clermont D, Santoni S, Saker S, Gomard M, Gardais E, Bizet C, , Assessment of DNA encapsulation, a new room-temperature DNA storage method., Biopreserv Biobank 2014 Jun; 12(3): 176-83.
• 2014
  Hot C, Berthet N, Chesneau O, , Characterization of sal(A), a novel gene responsible for lincosamide and streptogramin A resistance in Staphylococcus sciuri., Antimicrob Agents Chemother 2014 Jun; 58(6): 3335-41.
• 2014
  Périchon B, Goussard S, Walewski V, Krizova L, Cerqueira G, Murphy C, Feldgarden M, Wortman J, Clermont D, Nemec A, Courvalin P, , Identification of 50 class D β-lactamases and 65 Acinetobacter-derived cephalosporinases in Acinetobacter spp., Antimicrob Agents Chemother 2014 ; 58(2): 936-49.
• 2013
  Viaud S, Saccheri F, Mignot G, Yamazaki T, Daillère R, Hannani D, Enot DP, Pfirschke C, Engblom C, Pittet MJ, Schlitzer A, Ginhoux F, Apetoh L, Chachaty E, Woerther PL, Eberl G, Bérard M, Ecobichon C, Clermont D, Bizet C, Gaboriau-Routhiau V, Cerf-Bensussan N, Opolon P, Yessaad N, Vivier E, Ryffel B, Elson CO, Doré J, Kroemer G, Lepage P, Boneca IG, Ghiringhelli F, Zitvogel L, The intestinal microbiota modulates the anticancer immune effects of cyclophosphamide, Science 2013 Nov;342(6161):971-6.
• 2013
  Tessé S, Trueba F, Berthet N, Hot C, Chesneau O, , Resistance Genes Underlying the LSA Phenotype of Staphylococcal Isolates from France., Antimicrob Agents Chemother 2013 Sep; 57(9): 4543-4546.
• 2013
  Cousin S, Clermont D, Creno S, Ma L, Loux V, Bizet C, Bouchier C, , Draft Genome Sequence of Lactobacillus pasteurii CRBIP 24.76T., Genome Announc 2013 Aug; 1(4): .
• 2013
  Cousin S, Creno S, Ma L, Clermont D, Loux V, Bizet C, Bouchier C, , Draft Genome Sequence of Lactobacillus hominis Strain CRBIP 24.179T, Isolated from Human Intestine., Genome Announc 2013 Aug; 1(4): .
• 2013
  Cousin S, Loux V, Ma L, Creno S, Clermont D, Bizet C, Bouchier C, , Draft Genome Sequences of Lactobacillus equicursoris CIP 110162T and Lactobacillus sp. Strain CRBIP 24.137, Isolated from Thoroughbred Racehorse Feces and Human Urine, Respectively., Genome Announc 2013 Aug; 1(4): .
• 2013
  Falentin H, Cousin S, Clermont D, Creno S, Ma L, Chuat V, Loux V, Rüdiger P, Bizet C, Bouchier C, Draft Genome Sequences of Five Strains of Lactobacillus acidophilus, Strain CIP 76.13T, Isolated from Humans, Strains CIRM-BIA 442 and CIRM-BIA 445, Isolated from Dairy Products, and Strains DSM 20242 and DSM 9126 of Unknown Origin, Genome Announc 2013 Aug;1(4).
• 2013
  Nunez-Samudio V, Chesneau O, , Functional interplay between the ATP binding cassette Msr(D) protein and the membrane facilitator superfamily Mef(E) transporter for macrolide resistance in Escherichia coli., Res Microbiol 2013 Apr; 164(3): 226-35.
• 2013
  Yarza P, Spröer C, Swiderski J, Mrotzek N, Spring S, Tindall BJ, Gronow S, Pukall R, Klenk HP, Lang E, Verbarg S, Crouch A, Lilburn T, Beck B, Unosson C, Cardew S, Moore ER, Gomila M, Nakagawa Y, Janssens D, De Vos P, Peiren J, Suttels T, Clermont D, Bizet C, Sakamoto M, Iida T, Kudo T, Kosako Y, Oshida Y, Ohkuma M, R Arahal D, Spieck E, Pommerening Roeser A, Figge M, Park D, Buchanan P, Cifuentes A, Munoz R, Euzéby JP, Schleifer KH, Ludwig W, Amann R, Glöckner FO, Rosselló-Móra R, Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names, Syst. Appl. Microbiol. 2013 Feb;36(1):69-73.
• 2013
  Cousin S, Motreff L, Gulat-Okalla ML, Gouyette C, Spröer C, Schumann P, Begaud E, Bouchier C, Clermont D, Bizet C, , Lactobacillus pasteurii sp. nov. and Lactobacillus hominis sp. nov., Int J Syst Evol Microbiol 2013 Jan; 63(Pt 1): 53-59.
• 2012
  Cousin S, Ma L, Creno S, Clermont D, Loux V, Bizet C, Bouchier C, , Draft genome sequence of Lactobacillus gigeriorum CRBIP 24.85T, isolated from a chicken crop., J Bacteriol 2012 Nov; 194(21): 5973.
• 2012
  Lopez-Sanchez MJ, Sauvage E, Da Cunha V, Clermont D, Ratsima Hariniaina E, Gonzalez-Zorn B, Poyart C, Rosinski-Chupin I, Glaser P, , The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome., Mol Microbiol 2012 Sep; 85(6): 1057-71.
• 2012
  Cousin S, Gulat-Okalla ML, Motreff L, Gouyette C, Bouchier C, Clermont D, Bizet C, , Lactobacillus gigeriorum sp. nov., isolated from chicken crop., Int J Syst Evol Microbiol 2012 Feb; 62(Pt 2): 330-334.
• 2010
  Leclercq A, Clermont D, Bizet C, Grimont PAD, Le Flèche-Matéos A, Roche SM, Buchrieser C, Cadet-Daniel V, Le Monnier A, Lecuit M, Allerberger F, Listeria rocourtiae sp. nov., Int J Syst Evol Microbiol 2010 Sep; 60(Pt 9): 2210-2214.
• 2009
  Ivanova EP, Christen R, Bizet C, Clermont D, Motreff L, Bouchier C, Zhukova NV, Crawford RJ, Kiprianova EA, , Pseudomonas brassicacearum subsp. neoaurantiaca subsp. nov., orange-pigmented bacteria isolated from soil and the rhizosphere of agricultural plants., Int J Syst Evol Microbiol 2009 Oct; 59(Pt 10): 2476-81.
• 2007
  Chesneau O, Tsvetkova K, Courvalin P, , Resistance phenotypes conferred by macrolide phosphotransferases., FEMS Microbiol Lett 2007 Apr; 269(2): 317-22.
• 2006
  Petrella S, Renard M, Ziental-Gelus N, Clermont D, Jarlier V, Sougakoff W, Characterization of the chromosomal class A beta-lactamase CKO from Citrobacter koseri, FEMS Microbiol. Lett. 2006 Jan;254(2):285-92.
• 2005
  Chesneau O, Ligeret H, Hosan-Aghaie N, Morvan A, Dassa E, , Molecular analysis of resistance to streptogramin A compounds conferred by the Vga proteins of staphylococci., Antimicrob Agents Chemother 2005 Mar; 49(3): 973-80.
• 2004
  Feurer C, Clermont D, Bimet F, Candréa A, Jackson M, Glaser P, Bizet C, Dauga C, , Taxonomic characterization of nine strains isolated from clinical and environmental specimens, and proposal of Corynebacterium tuberculostearicum sp. nov., Int J Syst Evol Microbiol 2004 Jul; 54(Pt 4): 1055-1061.