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  • 2021
    Pfeifer E, Moura de Sousa JA, Touchon M, Rocha EPC, , Bacteria have numerous distinctive groups of phage-plasmids with conserved phage and variable plasmid gene repertoires., Nucleic Acids Res 2021 03; 49(5): 2655-2673.
  • 2021
    de Sousa JAM, Pfeifer E, Touchon M, Rocha EPC, , Causes and consequences of bacteriophage diversification via genetic exchanges across lifestyles and bacterial taxa., Mol Biol Evol 2021 Feb; (): .
  • 2020
    Bernheim A, Bikard D, Touchon M, Rocha EPC, Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements, Nucleic Acids Res. 2020 Jan;48(2):748-760.
  • 2019
    Bernheim A, Bikard D, Touchon M, Rocha EPC, A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria, Philos. Trans. R. Soc. Lond., B, Biol. Sci. 2019 May;374(1772):20180088.
  • 2018
    Rendueles O, de Sousa JAM, Bernheim A, Touchon M, Rocha EPC, Genetic exchanges are more frequent in bacteria encoding capsules, PLoS Genet. 2018 12;14(12):e1007862.
  • 2018
    Couvin D, Bernheim A, Toffano-Nioche C, Touchon M, Michalik J, Néron B, Rocha EPC, Vergnaud G, Gautheret D, Pourcel C, CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins, Nucleic Acids Res. 2018 Jul;46(W1):W246-W251.
  • 2018
    Clerissi C, Touchon M, Capela D, Tang M, Cruveiller S, Genthon C, Lopez-Roques C, Parker MA, Moulin L, Masson-Boivin C, Rocha EPC, Parallels between experimental and natural evolution of legume symbionts, Nat Commun 2018 06;9(1):2264.
  • 2017
    Aude Bernheim, Alicia Calvo Villamanan, Clovis Basier, Lun Cui, Eduardo P. C. Rocha, Marie Touchon, David Bikard, Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria, Nature Communications 8, 2094..
  • 2017
    Oliveira PH, Touchon M, Cury J, Rocha EPC, The chromosomal organization of horizontal gene transfer in bacteria, Nat Commun 2017 Oct;8(1):841.
  • 2017
    Garcia-Garcera M, Touchon M, Brisse S, Rocha EPC, Metagenomic assessment of the interplay between the environment and the genetic diversification of Acinetobacter, Environ. Microbiol. 2017 Oct;.
  • 2017
    Cury J, Touchon M, Rocha EPC, Integrative and conjugative elements and their hosts: composition, distribution and organization, Nucleic Acids Res. 2017 Sep;45(15):8943-8956.
  • 2017
    Jamet A, Touchon M, Ribeiro-Gonçalves B, Carriço JA, Charbit A, Nassif X, Ramirez M, Rocha EPC, A widespread family of polymorphic toxins encoded by temperate phages, BMC Biol. 2017 Aug;15(1):75.
  • 2017
    Rendueles O, Garcia-Garcerà M, Néron B, Touchon M, Rocha EPC, Abundance and co-occurrence of extracellular capsules increase environmental breadth: Implications for the emergence of pathogens, PLoS Pathog. 2017 Jul;13(7):e1006525.
  • 2017
    Touchon M, Moura de Sousa JA, Rocha EPC, Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer, Curr Opin Microbiol. 2017 May 17;38:66-73.
  • 2016
    Breurec S, Criscuolo A, Diancourt L, Rendueles O, Vandenbogaert M, Passet V, Caro V, Rocha EP, Touchon M, Brisse S, Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis, Sci Rep 2016;6:30379.
  • 2016
    Pedro H. Oliveira, Marie Touchon, and Eduardo P. C. Rocha, Regulation of genetic flux between bacteria by restriction-modification systems., Proc Natl Acad Sci U S A. 2016 May 17;113(20):5658-63. doi: 10.1073/pnas.1603257113. .
  • 2016
    Jean Cury, Thomas Jové, Marie Touchon, Bertrand Néron, and Eduardo PC Rocha, Identification and analysis of integrons and cassette arrays in bacterial genomes., Nucleic Acids Res. 2016 Apr 29. pii: gkw319..
  • 2016
    Touchon M, Bernheim A, Rocha EPC, Genetic and life-history traits associated with the distribution of prophages in bacteria., ISME J. 2016 Mar 25. doi: 10.1038/ismej.2016.47. .
  • 2016
    Sophie S. Abby, Jean Cury, Julien Guglielmini, Bertrand Néron, Marie Touchon & Eduardo P. C. Rocha, Identification of protein secretion systems in bacterial genomes, Scientific Reports 6, 23080 (2016).
  • 2016
    Maury MM, Tsai YH, Charlier C, Touchon M, Chenal-Francisque V, Leclercq A, Criscuolo A, Gaultier C, Roussel S, Brisabois A, Disson O, Rocha EPC, Brisse S, Lecuit M, , Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity., Nat Genet 2016 Mar; 48(3): 308-313.
  • 2016
    Touchon M, Rocha EPC, Coevolution of the Organization and Structure of Prokaryotic Genomes., Cold Spring Harb Perspect Biol. 2016 Jan 4;8(1).
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