• 2024
  Duan C, Liu Y, Liu Y, Liu L, Cai M, Zhang R, Zeng Q, Koonin EV, Krupovic M, Li M, Diversity of Bathyarchaeia viruses in metagenomes and virus-encoded CRISPR system components, ISME Commun 2024 Jan; 4(1): ycad011.
• 2023
  Kreutzberger MAB#, Cvirkaite-Krupovic V#, Liu Y, Baquero DP, Liu J, Sonani RR, Calladine CR, Wang F*, Krupovic M*, Egelman EH*, The evolution of archaeal flagellar filaments, Proc Natl Acad Sci U S A 2023 Jul; 120(28): e2304256120.
• 2023
  Chen Z, Liu Y, Wang Y, Du X, Deng X, Xiang J, Wang Y, Wang J, Krupovic M, Du S, Chen X, A virus-borne DNA damage signaling pathway controls the lysogeny-induction switch in a group of temperate pleolipoviruses, Nucleic Acids Res 2023 Apr; 51(7): 3270-3287.
• 2022
  Liu Y, Krupovic M, Genome chromatinization in giant double-stranded DNA viruses, Trends Biochem Sci 2022 Jan; 47(1): 3-5.
• 2021
  Liu Y, Demina TA, Roux S, Aiewsakun P, Kazlauskas D, Simmonds P, Prangishvili D, Oksanen HM, Krupovic M, Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes, PLoS Biol 2021 Nov; 19(11): e3001442.
• 2021
  Krupovic M, Turner D, Morozova V, Dyall-Smith M, Oksanen HM, Edwards R, Dutilh BE, Lehman SM, Reyes A, Baquero DP, Sullivan MB, Uchiyama J, Nakavuma J, Barylski J, Young MJ, Du S, Alfenas-Zerbini P, Kushkina A, Kropinski AM, Kurtböke I, Brister JR, Lood C, Sarkar BL, Yigang T, Liu Y, Huang L, Wittmann J, Chanishvili N, van Zyl LJ, Rumnieks J, Mochizuki T, Jalasvuori M, Aziz RK, Łobocka M, Stedman KM, Shkoporov AN, Gillis A, Peng X, Enault F, Knezevic P, Lavigne R, Rhee SK, Cvirkaite-Krupovic V, Moraru C, Moreno Switt AI, Poranen MM, Millard A, Prangishvili D, Adriaenssens EM, , Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021, Arch Virol 2021 Aug; (): .
• 2021
  Medvedeva S, Brandt D, Cvirkaite-Krupovic V, Liu Y, Severinov K, Ishino S, Ishino Y, Prangishvili D, Kalinowski J, Krupovic M, New insights into the diversity and evolution of the archaeal mobilome from three complete genomes of Saccharolobus shibatae, Environ Microbiol 2021 Jun; 23(8):4612-4630.
• 2021
  Aevarsson A, Kaczorowska AK, Adalsteinsson BT, Ahlqvist J, Al-Karadaghi S, Altenbuchner J, Arsin H, Átlasson ÚÁ, Brandt D, Cichowicz-Cieślak M, Cornish KAS, Courtin J, Dabrowski S, Dahle H, Djeffane S, Dorawa S, Dusaucy J, Enault F, Fedøy AE, Freitag-Pohl S, Fridjonsson OH, Galiez C, Glomsaker E, Guérin M, Gundesø SE, Gudmundsdóttir EE, Gudmundsson H, Håkansson M, Henke C, Helleux A, Henriksen JR, Hjörleifdóttir S, Hreggvidsson GO, Jasilionis A, Jochheim A, Jónsdóttir I, Jónsdóttir LB, Jurczak-Kurek A, Kaczorowski T, Kalinowski J, Kozlowski LP, Krupovic M, Kwiatkowska-Semrau K, Lanes O, Lange J, Lebrat J, Linares-Pastén J, Liu Y, Lorentsen SA, Lutterman T, Mas T, Merré W, Mirdita M, Morzywołek A, Ndela EO, Karlsson EN, Olgudóttir E, Pedersen C, Perler F, Pétursdóttir SK, Plotka M, Pohl E, Prangishvili D, Ray JL, Reynisson B, Róbertsdóttir T, Sandaa RA, Sczyrba A, Skírnisdóttir S, Söding J, Solstad T, Steen IH, Stefánsson SK, Steinegger M, Overå KS, Striberny B, Svensson A, Szadkowska M, Tarrant EJ, Terzian P, Tourigny M, Bergh TVD, Vanhalst J, Vincent J, Vroling B, Walse B, Wang L, Watzlawick H, Welin M, Werbowy O, Wons E, Zhang R, Going to extremes – a metagenomic journey into the dark matter of life, FEMS Microbiol Lett 2021 Jun; 368(12):fnab067 .
• 2021
  Prangishvili D, Liu Y, Krupovic M, ICTV Report Consortium, ICTV Virus Taxonomy Profile: Portogloboviridae, J Gen Virol 2021 Jun; 102(6):001605.
• 2020
  Baquero DP, Liu Y, Wang F, Egelman EH, Prangishvili D, Krupovic M, Structure and assembly of archaeal viruses, Adv Virus Res. 2020 Oct; 108:127-164.
• 2020
  Baquero DP, Contursi P, Piochi M, Bartolucci S, Liu Y, Cvirkaite-Krupovic V, Prangishvili D, Krupovic M, New virus isolates from Italian hydrothermal environments underscore the biogeographic pattern in archaeal virus communities, ISME J 2020 Jul; 14(7): 1821-1833.
• 2019
  Medvedeva S, Liu Y, Koonin EV, Severinov K, Prangishvili D, Krupovic M, Virus-borne mini-CRISPR arrays are involved in interviral conflicts, Nat Commun 2019 Nov;10(1):5204.
• 2019
  Wang F, Liu Y, Su Z, Osinski T, de Oliveira GAP, Conway JF, Schouten S, Krupovic M, Prangishvili D, Egelman EH, A packing for A-form DNA in an icosahedral virus, Proc. Natl. Acad. Sci. U.S.A. 2019 Nov;116(45):22591-22597.
• 2019
  Prangishvili D, Mochizuki T, Liu Y, Krupovic M, ICTV Reports Consortium, ICTV Virus Taxonomy Profile: Clavaviridae, J. Gen. Virol. 2019 Sep;100(9):1267-1268.
• 2019
  Liu Y, Brandt D, Ishino S, Ishino Y, Koonin EV, Kalinowski J, Krupovic M*, Prangishvili D*, New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures, Environ. Microbiol. 2019 Jun;21(6):2002-2014.
• 2018
  Liu Y, Osinski T, Wang F, Krupovic M, Schouten S, Kasson P, Prangishvili D, Egelman EH, Structural conservation in a membrane-enveloped filamentous virus infecting a hyperthermophilic acidophile, Nat Commun 2018 Aug; 9(1):3360.
• 2018
  Wang J, Liu Y, Liu Y, Du K, Xu S, Wang Y, Krupovic M, Chen X, A novel family of tyrosine integrases encoded by the temperate pleolipovirus SNJ2, Nucleic Acids Res. 2018 Mar;46(5):2521-2536.
• 2017
  Ptchelkine D, Gillum A, Mochizuki T, Lucas-Staat S, Liu Y, Krupovic M, Phillips SEV, Prangishvili D, Huiskonen JT, Unique architecture of thermophilic archaeal virus APBV1 and its genome packaging, Nat Commun 2017 Nov;8(1):1436.
• 2017
  Liu Y, Ishino S, Ishino Y, Pehau-Arnaudet G, Krupovic M*, Prangishvili D*, A novel type of polyhedral viruses infecting hyperthermophilic archaea, J. Virol. 2017 Jun 9;91(13):e00589-17.
• 2016
  Wang Y, Sima L, Lv J, Huang S, Liu Y, Wang J, Krupovic M, Chen X, Identification, Characterization, and Application of the Replicon Region of the Halophilic Temperate Sphaerolipovirus SNJ1, J. Bacteriol. 2016 Jul;198(14):1952-64.