Ligne de temps
Rayan Chikhi
Responsable de Structure
30 sept. 2025
03 févr. 2025
publication
MUSET: Set of utilities for constructing abundance unitig matrices from sequencing data.
Lire plus01 déc. 2024
publication
Differential stress responsiveness determines intraspecies virulence heterogeneity and host adaptation in Listeria monocytogenes.
Lire plus24 mars 2024
30 nov. 2023
17 nov. 2023
publication
aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets.
Lire plus06 nov. 2023
publication
decOM: similarity-based microbial source tracking of ancient oral samples using k-mer-based methods
Lire plus30 juin 2023
22 déc. 2022
publication
SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads.
Lire plus18 nov. 2022
29 juil. 2022
publication
The K-mer File Format: a standardized and compact disk representation of sets of k-mers
Lire plus06 oct. 2021
14 sept. 2021
publication
Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer.
Lire plus26 juil. 2021
news
Strainberry: automated strain separation in low-complexity metagenomes using long reads
Lire plus23 juil. 2021
publication
Strainberry: automated strain separation in low-complexity metagenomes using long reads.
Lire plus27 mai 2021
event
DCB Seminar- C. Titus Brown: “Lightweight and large scale (meta)genome analysis: chasing strain variation across a million genomes!”
Lire plus25 août 2020
24 juin 2019
publication
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data
Lire plus26 mai 2019
publication
Parallel decompression of gzip-compressed files and random access to DNA sequences
Lire plus03 mai 2019
event
[C3BI Seminar]- Eran Halperin: New computational tools for the analysis of microbiome dynamics
Lire plus27 mars 2019
15 janv. 2019