Timeline
Rayan Chikhi
Head of Structure
03 Feb 2025
publication
MUSET: Set of utilities for constructing abundance unitig matrices from sequencing data.
Read more01 Dec 2024
publication
Differential stress responsiveness determines intraspecies virulence heterogeneity and host adaptation in Listeria monocytogenes.
Read more24 Mar 2024
30 Nov 2023
17 Nov 2023
publication
aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets.
Read more06 Nov 2023
publication
decOM: similarity-based microbial source tracking of ancient oral samples using k-mer-based methods.
Read more30 Jun 2023
22 Dec 2022
publication
SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads.
Read more18 Nov 2022
29 Jul 2022
publication
The K-mer File Format: a standardized and compact disk representation of sets of k-mers
Read more06 Oct 2021
14 Sep 2021
publication
Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer.
Read more26 Jul 2021
news
Strainberry: automated strain separation in low-complexity metagenomes using long reads
Read more23 Jul 2021
publication
Strainberry: automated strain separation in low-complexity metagenomes using long reads.
Read more27 May 2021
event
DCB Seminar- C. Titus Brown: “Lightweight and large scale (meta)genome analysis: chasing strain variation across a million genomes!”
Read more25 Aug 2020
24 Jun 2019
publication
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data
Read more26 May 2019
publication
Parallel decompression of gzip-compressed files and random access to DNA sequences
Read more03 May 2019
event
[C3BI Seminar]- Eran Halperin: New computational tools for the analysis of microbiome dynamics
Read more27 Mar 2019
15 Jan 2019