Timeline
Rayan Chikhi
Head of Structure
24 Mar 2024
30 Nov 2023
17 Nov 2023
publication
aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets.
Read more06 Nov 2023
publication
decOM: similarity-based microbial source tracking of ancient oral samples using k-mer-based methods.
Read more30 Jun 2023
22 Dec 2022
publication
SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads.
Read more18 Nov 2022
29 Jul 2022
publication
The K-mer File Format: a standardized and compact disk representation of sets of k-mers.
Read more06 Oct 2021
14 Sep 2021
publication
Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer.
Read more26 Jul 2021
news
Strainberry: automated strain separation in low-complexity metagenomes using long reads
Read more23 Jul 2021
publication
Strainberry: automated strain separation in low-complexity metagenomes using long reads.
Read more27 May 2021
event
DCB Seminar- C. Titus Brown: “Lightweight and large scale (meta)genome analysis: chasing strain variation across a million genomes!”
Read more15 Sep 2020
25 Aug 2020
24 Jun 2019
publication
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data
Read more26 May 2019
publication
Parallel decompression of gzip-compressed files and random access to DNA sequences
Read more03 May 2019
event
[C3BI Seminar]- Eran Halperin: New computational tools for the analysis of microbiome dynamics
Read more27 Mar 2019
15 Jan 2019