Timeline

Rayan Chikhi
Head of Structure
30 Nov 2023
publication

Comparing methods for constructing and representing human pangenome graphs.

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17 Nov 2023
publication

aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets.

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06 Nov 2023
publication

decOM: similarity-based microbial source tracking of ancient oral samples using k-mer-based methods.

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30 Jun 2023
publication

Efficient mapping of accurate long reads in minimizer space with mapquik.

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22 Dec 2022
publication

SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads.

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18 Nov 2022
publication

Mapping-friendly sequence reductions: Going beyond homopolymer compression.

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29 Jul 2022
publication

The K-mer File Format: a standardized and compact disk representation of sets of k-mers.

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06 Oct 2021
event

2021 Computational Biology Department Days

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14 Sep 2021
publication

Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer.

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26 Jul 2021
news

Strainberry: automated strain separation in low-complexity metagenomes using long reads

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23 Jul 2021
publication

Strainberry: automated strain separation in low-complexity metagenomes using long reads.

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27 May 2021
event

DCB Seminar- C. Titus Brown: “Lightweight and large scale (meta)genome analysis: chasing strain variation across a million genomes!”

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15 Sep 2020
project

10X Genomics barcode ordering

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25 Aug 2020
publication

A Graph-Theoretic Barcode Ordering Model forLinked-Reads

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24 Jun 2019
publication

Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data

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26 May 2019
publication

Parallel decompression of gzip-compressed files and random access to DNA sequences

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03 May 2019
event

[C3BI Seminar]- Eran Halperin: New computational tools for the analysis of microbiome dynamics

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27 Mar 2019
publication

Graph analysis of fragmented long-read bacterial genome assemblies

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15 Jan 2019
team

Sequence Bioinformatics

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