-
2024An unusual two-strain cholera outbreak in Lebanon, 2022-2023: a genomic epidemiology study., Nat Commun 2024 Aug; 15(1): 6963.
-
2023The evolution and international spread of extensively drug resistant Shigella sonnei, Nat Commun 14, 1983 (2023).
-
2023Rapid emergence of extensively drug-resistant Shigella sonnei in France., Nat Commun 2023 Jan; 14(1): 462.
-
2023Countrywide multi-serotype outbreak of Salmonella Bovismorbificans ST142 and monophasic Salmonella Typhimurium ST34 associated with dried pork sausages in France, September 2020* to January 2021., Euro Surveill 2023 Jan; 28(2): .
-
2022Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing., Nat Commun 2022 Jan; 13(1): 551.
-
2021Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa., Nat Microbiol 2021 Mar; 6(3): 327-338.
-
2021Seventh Pandemic Vibrio cholerae O1 Sublineages, Central African Republic., Emerg Infect Dis 2021 Jan; 27(1): 262-266.
-
2020Endocannabinoids Attenuate the Virulence of Certain Enteropathogenic Bacteria., Trends Microbiol 2020 Dec; (): .
-
2020The seventh pandemic of cholera in Europe revisited by microbial genomics., Nat Commun 2020 10; 11(1): 5347.
-
2020Highly Resistant Cholera Outbreak Strain in Zimbabwe., N. Engl. J. Med. 2020 08; 383(7): 687-689.
-
2020Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America., Emerging Infect. Dis. 2020 Jun; 26(6): 1164-1173.
-
2020The EnteroBase user’s guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity., Genome Res. 2020 01; 30(1): 138-152.
-
2020Source Attribution Study of Sporadic Salmonella Derby Cases in France., Front Microbiol 2020 ; 11(): 889.
-
2019Serotype distribution and antimicrobial resistance of human Salmonella enterica in Bangui, Central African Republic, from 2004 to 2013., PLoS Negl Trop Dis 2019 12; 13(12): e0007917.
-
2019Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei., Nat Commun 2019 10; 10(1): 4828.
-
2019Clinical Evaluation of a Multiplex PCR for the Detection of Salmonella enterica Serovars Typhi and Paratyphi A from Blood Specimens in a High-Endemic Setting., Am. J. Trop. Med. Hyg. 2019 09; 101(3): 513-520.
-
2019Salmonella enterica Serovar Panama, an Understudied Serovar Responsible for Extraintestinal Salmonellosis Worldwide., Infect. Immun. 2019 09; 87(9): .
-
2019The speciation and hybridization history of the genus Salmonella., Microb Genom 2019 08; 5(8): .
-
2019Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198., Microb Genom 2019 07; 5(7): .
-
2019Outbreak of Shiga toxin-producing Escherichia coli (STEC) O26 paediatric haemolytic uraemic syndrome (HUS) cases associated with the consumption of soft raw cow’s milk cheeses, France, March to May 2019., Euro Surveill. 2019 May; 24(22): .
-
2019Complement Gene Variants and Shiga Toxin-Producing Escherichia coli-Associated Hemolytic Uremic Syndrome: Retrospective Genetic and Clinical Study., Clin J Am Soc Nephrol 2019 03; 14(3): 364-377.
-
2019Outbreak of Salmonella enterica serotype Poona in infants linked to persistent Salmonella contamination in an infant formula manufacturing facility, France, August 2018 to February 2019., Euro Surveill. 2019 Mar; 24(13): .
-
2019Paediatric haemolytic uraemic syndrome related to Shiga toxin-producing Escherichia coli, an overview of 10 years of surveillance in France, 2007 to 2016., Euro Surveill. 2019 Feb; 24(8): .
-
2019Genomic insights into the 2016-2017 cholera epidemic in Yemen., Nature 2019 01; 565(7738): 230-233.
-
2019Reptiles in Guadeloupe (French West Indies) are a reservoir of major human Salmonella enterica serovars., PLoS ONE 2019 ; 14(7): e0220145.
-
2019A Simple and Robust Statistical Method to Define Genetic Relatedness of Samples Related to Outbreaks at the Genomic Scale – Application to Retrospective Salmonella Foodborne Outbreak Investigations., Front Microbiol 2019 ; 10(): 2413.
-
2019Revisiting the Global Epidemiology of Cholera in Conjuction With the Genomics of Vibrio cholerae., Front Public Health 2019 ; 7(): 203.
-
2018Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens, Science 2018 05;360(6390):733-738.
-
2018Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species, Nat Commun 2018 Apr;9(1):1462.
-
2017Early transmissible ampicillin resistance in zoonotic Salmonella enterica serotype Typhimurium in the late 1950s: a retrospective, whole-genome sequencing study, Lancet Infect Dis 2018 Feb;18(2):207-214.
-
2017Integrated view of Vibrio cholerae in the Americas, Science 2017 11;358(6364):789-793.
-
2017Genomic history of the seventh pandemic of cholera in Africa, Science 2017 11;358(6364):785-789.
-
2017The clinical and microbiological characteristics of enteric fever in Cambodia, 2008-2015, PLoS Negl Trop Dis 2017 Sep;11(9):e0005964.
-
2016Genome-scale rates of evolutionary change in bacteria, Microb Genom 2016 Nov;2(11):e000094.
-
2016Genomic analysis of Salmonella enterica serotype Paratyphi A during an outbreak in Cambodia, 2013-2015, Microb Genom 2016 Nov;2(11):e000092.
-
2016An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid, Nat Commun 2016 Oct;7:12827.
-
2016Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1, Nat Microbiol 2016 10;1(11):16209.
-
2016Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa, PLoS Negl Trop Dis 2016 Sep;10(9):e0004781.
-
2016Travel- and Community-Based Transmission of Multidrug-Resistant Shigella sonnei Lineage among International Orthodox Jewish Communities, Emerging Infect. Dis. 2016 Sep;22(9):1545-53.
-
2016What’s in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B, MBio 2016;7(4).
-
2016Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings, Nat. Genet. 2016 Aug;.
-
2016Characterisation of new Salmonella serovars by whole genome sequencing and traditional typing techniques, J. Med. Microbiol. 2016 Aug;.
-
2016Around the World in 1,475 Salmonella Geo-serotypes, Emerg Infect Dis, 2016 Jul; 22(7):1298-1302.
-
2016Global phylogeography and evolutionary history of Shigella dysenteriae type 1., Nat Microbiol 2016 03; 1(): 16027.
-
2016Global genomic epidemiology of Salmonella Typhimurium DT104, Appl. Environ. Microbiol. 2016 Mar;.
-
2016A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions, PLoS Negl Trop Dis 2016 Feb;10(2):e0004446.
-
2016Recurrent Hemolytic and Uremic Syndrome Induced by Escherichia Coli, Medicine (Baltimore) 2016 Jan;95(1):e2050.
-
2015Allelic variation contributes to bacterial host specificity, Nat Commun 2015;6:8754.
-
2015One-step identification of five prominent chicken Salmonella serovars and biotypes, J. Clin. Microbiol. 2015 Sep;.
-
2015Carbapenemase-producing Salmonella enterica serotype Kentucky ST198, North Africa, J. Antimicrob. Chemother. 2015 Sep;.
-
2015Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri, Elife 2015;4:e07335.
-
2015Draft genomes of Shigella strains used by the STOPENTERICS consortium, Gut Pathog 2015;7:14.
-
2015Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events, Nat. Genet. 2015 Jun;47(6):632-9.
-
2015Rapid Genotyping of Shigella sonnei by Use of Multiplex High-Resolution Melting, J. Clin. Microbiol. 2015 Jul;53(7):2389-91.
-
2015Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study, Lancet Infect Dis 2015 Aug;15(8):913-21.
-
2015Enteric bacterial pathogens in children with diarrhea in Niger: diversity and antimicrobial resistance, PLoS ONE 2015;10(3):e0120275.
-
2014Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever, Proc. Natl. Acad. Sci. U.S.A. 2014 Aug;111(33):12199-204.
-
2014Supplement 2008-2010 (no. 48) to the White-Kauffmann-Le Minor scheme, Res. Microbiol. 2014 Sep;165(7):526-30.
-
2014Salmonella serotypes in reptiles and humans, French Guiana, Vet. Microbiol. 2014 May;170(1-2):167-71.
-
2014CRISPR is an optimal target for the design of specific PCR assays for salmonella enterica serotypes Typhi and Paratyphi A, PLoS Negl Trop Dis 2014;8(1):e2671.
-
2014Lack of efflux mediated quinolone resistance in Salmonella enterica serovars Typhi and Paratyphi A, Front Microbiol 2014;5:12.
-
2013The global establishment of a highly-fluoroquinolone resistant Salmonella enterica serotype Kentucky ST198 strain, Front Microbiol 2013;4:395.
-
2013Targeting relaxase genes for classification of the predominant plasmids in Enterobacteriaceae, Int. J. Med. Microbiol. 2014 May;304(3-4):236-42.
-
2013Highly drug-resistant Salmonella enterica serotype Kentucky ST198-X1: a microbiological study, Lancet Infect Dis 2013 Aug;13(8):672-9.
-
2013Evaluation of CHROMagar STEC and STEC O104 chromogenic agar media for detection of Shiga Toxin-producing Escherichia coli in stool specimens, J. Clin. Microbiol. 2013 Mar;51(3):894-900.
-
2012[Enterohemorragic Escherichia coli (EHEC): topical enterobacteriaceae], Presse Med 2013 Jan;42(1):68-75.
-
2012Early strains of multidrug-resistant Salmonella enterica serovar Kentucky sequence type 198 from Southeast Asia harbor Salmonella genomic island 1-J variants with a novel insertion sequence, Antimicrob. Agents Chemother. 2012 Oct;56(10):5096-102.
-
2012CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections, PLoS ONE 2012;7(5):e36995.
-
2012Foodborne outbreak and nonmotile Salmonella enterica variant, France, Emerging Infect. Dis. 2012 Jan;18(1):132-4.
-
2011International spread of an epidemic population of Salmonella enterica serotype Kentucky ST198 resistant to ciprofloxacin, J. Infect. Dis. 2011 Sep;204(5):675-84.
-
2011Salmonella enterica Serotype Typhi with nonclassical quinolone resistance phenotype, Emerging Infect. Dis. 2011 Jun;17(6):1091-4.
-
2011Prevalence and characterization of extended-spectrum beta-lactamases-producing Salmonella enterica isolates in Saragossa, Spain (2001-2008), Microb. Drug Resist. 2011 Jun;17(2):207-13.
-
2010[Typhoid fever: facing the challenge of resistant strains], Med Sci (Paris) 2010 Nov;26(11):969-75.
-
2009Molecular and biochemical characterization of the natural chromosome-encoded class A beta-lactamase from Pseudomonas luteola, Antimicrob. Agents Chemother. 2010 Jan;54(1):45-51.
-
2009Serological reactivity and bacterial genotypes in Chlamydia trachomatis urogenital infections in Guadeloupe, French West Indies, Sex Transm Infect 2010 Apr;86(2):101-5.
-
2009Supplement 2003-2007 (No. 47) to the White-Kauffmann-Le Minor scheme, Res. Microbiol. 2010 Jan-Feb;161(1):26-9.
-
2009Ceftazidime-resistant Salmonella enterica, Morocco, Emerging Infect. Dis. 2009 Oct;15(10):1693-5.
-
2009Chromosomal integration of the extended-spectrum beta-lactamase gene blaCTX-M-15 in Salmonella enterica serotype Concord isolates from internationally adopted children, Antimicrob. Agents Chemother. 2009 05;53(5):1808-16.
-
2009Novel plasmid-encoded ceftazidime-hydrolyzing CTX-M-53 extended-spectrum beta-lactamase from Salmonella enterica serotypes Westhampton and Senftenberg, Antimicrob. Agents Chemother. 2009 May;53(5):1944-51.
-
2008Association of IS26-composite transposons and complex In4-type integrons generates novel multidrug resistance loci in Salmonella genomic island 1, J. Antimicrob. Chemother. 2009 Feb;63(2):282-9.
-
2008Novel insertion sequence- and transposon-mediated genetic rearrangements in genomic island SGI1 of Salmonella enterica serovar Kentucky, Antimicrob. Agents Chemother. 2008 Oct;52(10):3745-54.
-
2008Ceftriaxone-resistant salmonella enterica serotype Newport, France., Emerging Infect. Dis. 2008 Jun; 14(6): 954-7.
-
2007Clonal expansion and microevolution of quinolone-resistant Salmonella enterica serotype typhi in Vietnam from 1996 to 2004, J. Clin. Microbiol. 2007 Nov;45(11):3485-92.
-
2007Clonal reconquest of antibiotic-susceptible Salmonella enterica serotype Typhi in Son La Province, Vietnam, Am. J. Trop. Med. Hyg. 2007 Jun;76(6):1174-81.
-
2007Prevalence of qnr genes in Salmonella in France, J. Antimicrob. Chemother. 2007 Apr;59(4):751-4.
-
2006Molecular epidemiology of multidrug-resistant Shigella dysenteriae type 1 causing dysentery outbreaks in Central African Republic, 2003-2004, Trans. R. Soc. Trop. Med. Hyg. 2006 Dec;100(12):1151-8.
-
2006Multidrug resistance in Salmonella enterica serotype Typhimurium from humans in France (1993 to 2003), J. Clin. Microbiol. 2006 Mar;44(3):700-8.
-
2005Variants of the Klebsiella pneumoniae OKP chromosomal beta-lactamase are divided into two main groups, OKP-A and OKP-B, Antimicrob. Agents Chemother. 2005 Dec;49(12):5149-52.
-
2005Six groups of the OXY beta-Lactamase evolved over millions of years in Klebsiella oxytoca, Antimicrob. Agents Chemother. 2005 Aug;49(8):3453-62.
-
2005Multiple-antibiotic resistance in Salmonella enterica serotype Paratyphi B isolates collected in France between 2000 and 2003 is due mainly to strains harboring Salmonella genomic islands 1, 1-B, and 1-C, Antimicrob. Agents Chemother. 2005 Jul;49(7):2793-801.
-
2005Nosocomial outbreak caused by Salmonella enterica serotype Livingstone producing CTX-M-27 extended-spectrum beta-lactamase in a neonatal unit in Sousse, Tunisia, J. Clin. Microbiol. 2005 Mar;43(3):1037-44.
-
2004Emergence of extended-spectrum-beta-lactamase (CTX-M-9)-producing multiresistant strains of Salmonella enterica serotype Virchow in poultry and humans in France, J. Clin. Microbiol. 2004 Dec;42(12):5767-73.
-
2004Characterization of extended-spectrum-beta-lactamase (CTX-M-15)-producing strains of Salmonella enterica isolated in France and Senegal, FEMS Microbiol. Lett. 2004 Sep;238(2):353-8.
-
2004Extended-spectrum-beta-lactamase (TEM-52)-producing strains of Salmonella enterica of various serotypes isolated in France, J. Clin. Microbiol. 2004 Jul;42(7):3359-62.
-
2004SHV-12-like extended-spectrum-beta-lactamase-producing strains of Salmonella enterica serotypes Babelsberg and Enteritidis isolated in France among infants adopted from Mali, J. Clin. Microbiol. 2004 Jun;42(6):2432-7.