INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations
IINCEPTION Goal The Inception’s goal is to develop a core structure to mobilize data resources, numerical sciences, and fundamental experimental biology in a range of health issues (Official website here : https://www.inception-program.fr/en). Inception program […]
10X Genomics barcode ordering
Linked-reads are a valuable technologies laying in between short reads and long reads. LR technologies allow the simulation of long reads using barcoded short reads. But the chemistry of such technologies have a limitation […]
2021Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer., Cell Syst 2021 Sep; (): .
2021Strainberry: automated strain separation in low-complexity metagenomes using long reads., Nat Commun 2021 07; 12(1): 4485.
2020A Graph-Theoretic Barcode Ordering Model forLinked-Reads, 20th International Workshop on Algorithms in Bioinformatics (WABI 2020).
2019Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data, Brief. Bioinformatics 2019 Jun;.
2019Parallel decompression of gzip-compressed files and random access to DNA sequences, HiCOMB'19, Proceedings of IPDPS 2019.
2019Graph analysis of fragmented long-read bacterial genome assemblies, Bioinformatics 2019 Mar;.