Désolé, cet article est seulement disponible en EN.
Cliquez pour voir le graph
Connexions
Membres
Rayan Chikhi
Responsable de Structure
Responsable
Projets
Most of our ongoing and past projects aren’t displayed here. See http://rayan.chikhi.name/ for an up to date list of publications
Projet Transversal
Publications
Télécharger-
2023Comparing methods for constructing and representing human pangenome graphs., Genome Biol 2023 Nov; 24(1): 274.
-
2023aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets., iScience 2023 Nov; 26(11): 108057.
-
2023decOM: similarity-based microbial source tracking of ancient oral samples using k-mer-based methods., Microbiome 2023 Nov; 11(1): 243.
-
2023Compression Algorithm for Colored de Bruijn Graphs, Leibniz International Proceedings in Informatics , 273 (17), Schloss Dagstuhl - Leibniz-Zentrum für Informatik, pp.1-14, 2023, 978-3-95977-294-5. ⟨10.4230/LIPIcs.WABI.2023.17⟩.
-
2023Efficient mapping of accurate long reads in minimizer space with mapquik., Genome Res 2023 Jun; (): .
-
2022SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads., Nat Methods 2022 Dec; (): .
-
2022Mapping-friendly sequence reductions: Going beyond homopolymer compression., iScience 2022 Nov; 25(11): 105305.
-
2022The K-mer File Format: a standardized and compact disk representation of sets of k-mers., Bioinformatics 2022 Jul; (): .
-
2021Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer., Cell Syst 2021 Sep; (): .
-
2021Strainberry: automated strain separation in low-complexity metagenomes using long reads., Nat Commun 2021 07; 12(1): 4485.
-
+Voir la liste complète de publications