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Content 2

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member
team
department
center
program_project
nrc
whocc
project
software
tool
patent

Keywords

Positions

Administrative Staff
Assistant Professor
Associate Professor
Clinical Research Assistant
Clinical Research Nurse
Clinician Researcher
Department Manager
Dual-education Student
Full Professor
Honorary Professor
Lab assistant
Master Student
MD-PhD Student
Medical Staff
Non-permanent Researcher
Nursing Staff
Permanent Researcher
Pharmacist
PhD Student
Physician
Post-doc
Prize
Project Manager
Research Associate
Research Engineer
Retired scientist
Technician
Undergraduate Student
Veterinary
Visiting Scientist

Appointments

Deputy Director of Center
Deputy Director of Department
Deputy Director of National Reference Center
Deputy Head of Facility
Director of Center
Director of Department
Director of Institute
Director of National Reference Center
Group Leader
Head of Facility
Head of Operations
Head of Structure
Honorary President of the Departement
Labex Coordinator

Search

Pseudomonas carbonaria sp. nov., isolated from charcoal.

International journal of systematic and evolutionary microbiology

Kämpfer P, Glaeser SP, McInroy JA, Clermont D, Criscuolo A, Busse HJ,

Molecular detection of hrHPV-induced high-grade squamous intraepithelial lesions of the cervix through a targeted RNA next generation sequencing assay

Molecular Medicine

Julia Faillace Thiesen, Elise Jacquemet, Pascal Campagne, Denis Chatelain, Etienne Brochot, Yves-Edouard Herpe, Nolwenn M Dheilly, Fabrice Bouilloux, Bénédicte Rognon, Alexandre Douablin, Guillaume Leboucher, Florent Percher, Marc Eloit, Philippe Pérot

Coregulation of extracellular vesicle production and fluconazole susceptibility in Cryptococcus neoformans

mBio

Juliana Rizzo, Adèle Trottier, Frédérique Moyrand, Jean-Yves J.-Y. Coppée, Corinne Maufrais, Ana Claudia G. Zimbres, Thi Tuong Vi Dang, Alexandre Alanio, M. Desnos-Ollivier, Isabelle Mouyna, Gérard Péhau-Arnaude, Pierre-Henri Commere, Sophie Novault, Iuliana V. Ene, Leonardo Nimrichter, Marcio Rodrigues, Guilhem Janbon

sgDI-tector: defective interfering viral genome bioinformatics for detection of coronavirus subgenomic RNAs.

RNA (New York, N.Y.)

Di Gioacchino A, Legendre R, Rahou Y, Najburg V, Charneau P, Greenbaum BD, Tangy F, van der Werf S, Cocco S, Komarova AV

Comment on: Co-occurrence of the cephalosporinase cepA and carbapenemase cfiA genes in a Bacteroides fragilis Division II strain: an unexpected finding

Journal of Antimicrobial Chemotherapy

Gauthier Delvallez, Laure Diancourt, Julien Guglielmini, Anne-Laure Michon, Sylvain Brisse, B. Dupuy, Alexis Criscuolo

Transcription-dependent regulation of replication dynamics modulates genome stability

Nature structural & molecular biology

Blin M, Le Tallec B, Nähse V, Schmidt M, Brossas C, Millot GA, Prioleau MN, Debatisse M

Proteome remodelling by the stress sigma factor RpoS/σS in Salmonella: identification of small proteins and evidence for post-transcriptional regulation.

Scientific reports

Lago M, Monteil V, Douche T, Guglielmini J, Criscuolo A, Maufrais C, Matondo M, Norel F,

Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium

Genome biology and evolution

Lassalle F, Planel R, Penel S, Chapulliot D, Barbe V, Dubost A, Calteau A, Vallenet D, Mornico D, Bigot T, Guéguen L, Vial L, Muller D, Daubin V, Nesme X

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

Nucleic Acids Research

David Couvin, Aude Bernheim, Claire Toffano-Nioche, Marie Touchon, Juraj Michalik, Bertrand Néron, Eduardo P C Rocha, Gilles Vergnaud, Daniel Gautheret, Christine Pourcel

Association between pertactin-producing Bordetella pertussis and fulminant pertussis in infants: a multicenter study in France, 2008-2019.

Clinical microbiology and infection

Leroux P, Matczak S, Bouchez V, Volant S, Ouziel A, Launay E, Faye A, Rabier V, Sarlangue J, Jeziorski E, Maakaroun-Vermesse Z, Madhi F, Pinquier D, Lorrot M, Pouletty M, Cantais A, Javouhey E, Aït Belghiti F, Guillot S, Rodrigues C, Brisse S, Cohen JF, Toubiana J

ROCK: digital normalization of whole genome sequencing data

ScienceOpen Posters

Véronique Legrand, Thomas Kergrohen, Nicolas Joly, Alexis Cruiscuolo

Simulation data for the estimation of numerical constants for approximating pairwise evolutionary distances between amino acid sequences

Data in Brief

Bigot T, Guglielmini J, Criscuolo A

Peptoniphilus nemausensis sp. nov. A new Gram-positive anaerobic coccus isolated from human clinical samples, an emendated description of the genus Peptoniphilus and an evaluation of the taxonomic status of Peptoniphilus species with not validly published names.

Systematic and applied microbiology

Aujoulat F, Mazuet C, Criscuolo A, Popoff MR, Enault C, Diancourt L, Jumas-Bilak E, Lavigne JP, Marchandin H

ARIAweb: a server for automated NMR structure calculation.

Nucleic acids research

Allain F, Mareuil F, Ménager H, Nilges M, Bardiaux B,

Excessive self-grooming, gene dysregulation and imbalance between the striosome and matrix compartments in the striatum of Shank3 mutant mice.

Frontiers in molecular neuroscience

Ferhat AT, Verpy E, Biton A, Forget B, De Chaumont F, Mueller F, Le Sourd AM, Coqueran S, Schmitt J, Rochefort C, Rondi-Reig L, Leboucher A, Boland A, Fin B, Deleuze JF, Boeckers TM, Ey E, Bourgeron T

Insights into amebiasis using a human 3D-intestinal model.

Cellular microbiology

Aguilar-Rojas A, Castellanos-Castro S, Matondo M, Gianetto QG, Varet H, Sismeiro O, Legendre R, Fernandes J, Hardy D, Coppée JY, Olivo-Marin JC, Guillen N,

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Deep Roots and Splendid Boughs of the Global Plant Virome

The nicotinic receptor alpha5 coding polymorphism rs16969968 as a major target in disease: Functional dissection and remaining challenges.

Calls

Application as permanent staff scientist at Institut Pasteur

Mid-career Group Leader position in AI in genomics at Institut Pasteur, Paris

Creation of new junior research groups at the Institut Pasteur – Call for applications 2026

Events

6 Upcoming Events

Calendar

Today

17 Dec 2025

View all

Soutenance de thèse de Doctorat / PhD Thesis Defense – Jean Randrianaly

Expertise group: GIPhy – Genome Informatics and Phylogenetics

Mutualized Platform for Microbiology

Bioinformatics and Biostatistics HUB

Collection of the Institut Pasteur (CIP)

Alexis Criscuolo

Dominique Clermont

Trainings & Tools: How to prepare for disasters

Expertise group: GIPhy – Genome Informatics and Phylogenetics

Mutualized Platform for Microbiology

Bioinformatics and Biostatistics HUB

Collection of the Institut Pasteur (CIP)

Alexis Criscuolo

Dominique Clermont

JOURNÉE DE LA RECHERCHE TRANSLATIONNELLE “Organoids : from stem cells to diseases modeling…”

Expertise group: GIPhy – Genome Informatics and Phylogenetics

Mutualized Platform for Microbiology

Bioinformatics and Biostatistics HUB

Collection of the Institut Pasteur (CIP)

Alexis Criscuolo

Dominique Clermont

Symposium : Spencer Shorte, remembering a visionary mind – Yasmine Belkaid, Michael Nilges, Kelly Rogers, Geert Van Minnebruggen, Ralph Palmisano, Jost Enninga, Pr. Jason Swedlow, Ivo Gomperts Boneca, Yara Reis, Rogerio Amino, Pr. Friedrich Frischknecht, Jean-Yves Tinevez, Mathieu Marchand, Soojin Jang, David Shum, Nathalie Aulner, Florian Muller

Expertise group: GIPhy – Genome Informatics and Phylogenetics

Mutualized Platform for Microbiology

Bioinformatics and Biostatistics HUB

Collection of the Institut Pasteur (CIP)

Alexis Criscuolo

Dominique Clermont

ReCombinaisons

Expertise group: GIPhy – Genome Informatics and Phylogenetics

Mutualized Platform for Microbiology

Bioinformatics and Biostatistics HUB

Collection of the Institut Pasteur (CIP)

Alexis Criscuolo

Dominique Clermont

Grand challenges in vector-borne diseases

Expertise group: GIPhy – Genome Informatics and Phylogenetics

Mutualized Platform for Microbiology

Bioinformatics and Biostatistics HUB

Collection of the Institut Pasteur (CIP)

Alexis Criscuolo

Dominique Clermont

Jobs

Interaction between NOD2 and Faecalibacterium in health and Crohn’s disease

Biology and Genetics of Bacterial Cell Wall

2-year Postdoc position on the cellular biology of human nicotinic receptors associated with lung cancer

Signaling and receptors dynamics

Job: Master Student

M2 Internship Proposal for “Strategies in small-scale bio-inspired circuits”

Decision and Bayesian Computation – Epiméthée

The Institut Pasteur is looking for a Director of Technology

Network

Publications

Cluster of COVID-19 in northern France: A retrospective closed cohort study

Nature communications

Inactivation of cytidine triphosphate synthase 1 prevents fatal auto-immunity in mice.

PLoS neglected tropical diseases

Serotype distribution and antimicrobial resistance of human Salmonella enterica in Bangui, Central African Republic, from 2004 to 2013.

Bacterial inhibition of Fas-mediated killing promotes neuroinvasion and persistence.

News

Symposium : Spencer Shorte, remembering a visionary mind

Ongoing Training in Medical Mycology in Cape Town (Africa) by team members from the CNRMA

Guilhem, Alexandre, Fanny & Sarah have been interviewed for “La Lettre de l&#...

PhD Thesis Defense / Soutenance de thèse de doctorat du docteur Marie Robert