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2024Adaptation mechanisms of Clostridioides difficile to auranofin and its impact on human gut microbiota., NPJ Biofilms Microbiomes 2024 Sep; 10(1): 86.
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2024An antiplasmid system drives antibiotic resistance gene integration in carbapenemase-producing Escherichia coli lineages., Nat Commun 2024 May; 15(1): 4093.
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2023Chance Favors the Prepared Genomes: Horizontal Transfer Shapes the Emergence of Antibiotic Resistance Mutations in Core Genes., Mol Biol Evol 2023 Oct; 40(10): .
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2023Determinants of worldwide antibiotic resistance dynamics across drug-bacterium pairs: a multivariable spatial-temporal analysis using ATLAS., Lancet Planet Health 2023 Jul; 7(7): e547-e557.
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2023A Novel CovS Variant Harbored by a Colonization Strain Reduces Streptococcus pyogenes Virulence., J Bacteriol 2023 Apr; 205(4): e0003923.
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2022The cnf1 gene is associated with an expanding Escherichia coli ST131 H30Rx/C2 subclade and confers a competitive advantage for gut colonization., Gut Microbes 2022 ; 14(1): 2121577.
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2022Specificities and Commonalities of Carbapenemase-Producing Escherichia coli Isolated in France from 2012 to 2015., mSystems 2022 Jan; (): e0116921.
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2021The CovR regulatory network drives the evolution of Group B Streptococcus virulence., PLoS Genet 2021 Sep; 17(9): e1009761.
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2021NAD+ pool depletion as a signal for the Rex regulon involved in Streptococcus agalactiae virulence., PLoS Pathog 2021 08; 17(8): e1009791.
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2021A model-based approach to characterize enzyme-mediated response to antibiotic treatments: going beyond the SIR classification, bioRxiv. 2021.07.16.452741.
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2021Drivers of ESBL-producing Escherichia coli dynamics in calf fattening farms: A modelling study., One Health 2021 Jun; 12(): 100238.
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2021Evolution of VIM-1-Producing Klebsiella pneumoniae Isolates from a Hospital Outbreak Reveals the Genetic Bases of the Loss of the Urease-Positive Identification Character., mSystems 2021 Jun; (): e0024421.
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2021Gnotobiotic rainbow trout (Oncorhynchus mykiss) model reveals endogenous bacteria that protect against Flavobacterium columnare infection., PLoS Pathog 2021 01; 17(1): e1009302.
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2021CRISPR Typing Increases the Discriminatory Power of Streptococcus agalactiae Typing Methods., Front Microbiol 2021 ; 12(): 675597.
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2020Diversity of mucoid to non-mucoid switch among carbapenemase-producing Klebsiella pneumoniae., BMC Microbiol 2020 Oct; 20(1): 325.
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2020Concomitant carriage of KPC-producing and non-KPC-producing Klebsiella pneumoniae ST512 within a single patient., J Antimicrob Chemother 2020 Aug; 75(8): 2087-2092.
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2020A single Proteus mirabilis lineage from human and animal sources: a hidden reservoir of OXA-23 or OXA-58 carbapenemases in Enterobacterales., Sci Rep 2020 06; 10(1): 9160.
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2020Emergence of New Non-Clonal Group 258 High-Risk Clones among Klebsiella pneumoniae Carbapenemase-Producing K. pneumoniae Isolates, France., Emerg Infect Dis 2020 06; 26(6): 1212-1220.
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2020Antibiotic resistance: turning evolutionary principles into clinical reality., FEMS Microbiol Rev 2020 03; 44(2): 171-188.
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2020Stepwise evolution and convergent recombination underlie the global dissemination of carbapenemase-producing Escherichia coli., Genome Med 2020 01; 12(1): 10.
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2019SME-4-producing Serratia marcescens from Argentina belonging to clade 2 of the S. marcescens phylogeny., J Antimicrob Chemother 2019 07; 74(7): 1836-1841.
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2019Conserved and specific features of Streptococcus pyogenes and Streptococcus agalactiae transcriptional landscapes., BMC Genomics 2019 Mar; 20(1): 236.
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2019Molecular epidemiology of invasive and non-invasive group B Streptococcus circulating in Serbia., Int J Med Microbiol 2019 Jan; 309(1): 19-25.
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2018A clone of the emergent Streptococcus pyogenes emm89 clade responsible for a large outbreak in a post-surgery oncology unit in France., Med Microbiol Immunol 2018 Nov; 207(5-6): 287-296.
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2018A 4.5-Year Within-Patient Evolution of a Colistin-Resistant Klebsiella pneumoniae Carbapenemase-Producing K. pneumoniae Sequence Type 258., Clin Infect Dis 2018 10; 67(9): 1388-1394.
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2018Demographic fluctuation of community-acquired antibiotic-resistant Staphylococcus aureus lineages: potential role of flimsy antibiotic exposure., ISME J 2018 08; 12(8): 1879-1894.
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2018Long-lasting successful dissemination of resistance to oxazolidinones in MDR Staphylococcus epidermidis clinical isolates in a tertiary care hospital in France., J Antimicrob Chemother 2018 Jan; 73(1): 41-51.
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2018CTX-M-15-Producing Shewanella Species Clinical Isolate Expressing OXA-535, a Chromosome-Encoded OXA-48 Variant, Putative Progenitor of the Plasmid-Encoded OXA-436., Antimicrob Agents Chemother 2018 01; 62(1): .
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2018Transcriptional Landscape of a blaKPC-2 Plasmid and Response to Imipenem Exposure in Escherichia coli TOP10., Front Microbiol 2018 ; 9(): 2929.
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2017Parallel Evolution of Group B Streptococcus Hypervirulent Clonal Complex 17 Unveils New Pathoadaptive Mutations., mSystems ; 2(5): .
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2017OXA-244-Producing Escherichia coli Isolates, a Challenge for Clinical Microbiology Laboratories., Antimicrob Agents Chemother 2017 09; 61(9): .
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2017Serum resistance and phase variation of a nasopharyngeal non-typeable Haemophilus influenzae isolate., Int J Med Microbiol 2017 Feb; 307(2): 139-146.
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2016Streptococcal group B integrative and mobilizable element IMESag-rpsI encodes a functional relaxase involved in its transfer., Open Biol. 2016 Oct;6(10). pii: 160084..
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2016Streptococcus Gallolyticus Subsp. Pasteurianus Infection In A Neonatal Intensive Care Unit., Pediatr Infect Dis J. 2016 Nov;35(11):1272-1275..
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2016High third-generation cephalosporin resistant Enterobacteriaceae prevalence rate among neonatal infections in Dakar, Senegal., BMC Infect Dis. 2016 Oct 20;16(1):587..
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2016Persistence of a dominant bovine lineage of group B Streptococcus reveals genomic signatures of host adaptation, Environ Microbiol. 2016 Nov;18(11):4216-4229.
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2016Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently., Genome Res 2016 11; 26(11): 1555-1564.
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2016Demography and Intercontinental Spread of the USA300 Community-Acquired Methicillin-Resistant Staphylococcus aureus Lineage., 7(1).
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2015Whole-Genome Comparison Uncovers Genomic Mutations between Group B Streptococci Sampled from Infected Newborns and Their Mothers, J. Bacteriol. 2015 Oct;197(20):3354-66.
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2014Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline., Nat Commun 2014 Aug; 5(): 4544.
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2014The diversity of prokaryotic DDE transposases of the mutator superfamily, insertion specificity, and association with conjugation machineries, Genome Biol Evol 2014 Feb;6(2):260-72.
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2012The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome., Mol Microbiol 2012 Sep; 85(6): 1057-71.