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2024An antiplasmid system drives antibiotic resistance gene integration in carbapenemase-producing Escherichia coli lineages., Nat Commun 2024 May; 15(1): 4093.
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2023Chance Favors the Prepared Genomes: Horizontal Transfer Shapes the Emergence of Antibiotic Resistance Mutations in Core Genes., Mol Biol Evol 2023 Oct; 40(10): .
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2023Determinants of worldwide antibiotic resistance dynamics across drug-bacterium pairs: a multivariable spatial-temporal analysis using ATLAS., Lancet Planet Health 2023 Jul; 7(7): e547-e557.
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2023A Novel CovS Variant Harbored by a Colonization Strain Reduces Streptococcus pyogenes Virulence., J Bacteriol 2023 Apr; 205(4): e0003923.
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2022The cnf1 gene is associated with an expanding Escherichia coli ST131 H30Rx/C2 subclade and confers a competitive advantage for gut colonization., Gut Microbes 2022 ; 14(1): 2121577.
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2022Specificities and Commonalities of Carbapenemase-Producing Escherichia coli Isolated in France from 2012 to 2015., mSystems 2022 Jan; (): e0116921.
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2021The CovR regulatory network drives the evolution of Group B Streptococcus virulence., PLoS Genet 2021 Sep; 17(9): e1009761.
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2021A model-based approach to characterize enzyme-mediated response to antibiotic treatments: going beyond the SIR classification, bioRxiv. 2021.07.16.452741.
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2021Evolution of VIM-1-Producing Klebsiella pneumoniae Isolates from a Hospital Outbreak Reveals the Genetic Bases of the Loss of the Urease-Positive Identification Character., mSystems 2021 Jun; (): e0024421.
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2020Diversity of mucoid to non-mucoid switch among carbapenemase-producing Klebsiella pneumoniae., BMC Microbiol 2020 Oct; 20(1): 325.
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2020Concomitant carriage of KPC-producing and non-KPC-producing Klebsiella pneumoniae ST512 within a single patient., J Antimicrob Chemother 2020 Aug; 75(8): 2087-2092.
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2020A single Proteus mirabilis lineage from human and animal sources: a hidden reservoir of OXA-23 or OXA-58 carbapenemases in Enterobacterales., Sci Rep 2020 06; 10(1): 9160.
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2020Emergence of New Non-Clonal Group 258 High-Risk Clones among Klebsiella pneumoniae Carbapenemase-Producing K. pneumoniae Isolates, France., Emerg Infect Dis 2020 06; 26(6): 1212-1220.
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2020Antibiotic resistance: turning evolutionary principles into clinical reality., FEMS Microbiol Rev 2020 03; 44(2): 171-188.
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2020Stepwise evolution and convergent recombination underlie the global dissemination of carbapenemase-producing Escherichia coli., Genome Med 2020 01; 12(1): 10.
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2019SME-4-producing Serratia marcescens from Argentina belonging to clade 2 of the S. marcescens phylogeny., J Antimicrob Chemother 2019 07; 74(7): 1836-1841.
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2019Conserved and specific features of Streptococcus pyogenes and Streptococcus agalactiae transcriptional landscapes., BMC Genomics 2019 Mar; 20(1): 236.
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2019Molecular epidemiology of invasive and non-invasive group B Streptococcus circulating in Serbia., Int J Med Microbiol 2019 Jan; 309(1): 19-25.
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2018A clone of the emergent Streptococcus pyogenes emm89 clade responsible for a large outbreak in a post-surgery oncology unit in France., Med Microbiol Immunol 2018 Nov; 207(5-6): 287-296.
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2018A 4.5-Year Within-Patient Evolution of a Colistin-Resistant Klebsiella pneumoniae Carbapenemase-Producing K. pneumoniae Sequence Type 258., Clin Infect Dis 2018 10; 67(9): 1388-1394.
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2018Demographic fluctuation of community-acquired antibiotic-resistant Staphylococcus aureus lineages: potential role of flimsy antibiotic exposure., ISME J 2018 08; 12(8): 1879-1894.
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2018Long-lasting successful dissemination of resistance to oxazolidinones in MDR Staphylococcus epidermidis clinical isolates in a tertiary care hospital in France., J Antimicrob Chemother 2018 Jan; 73(1): 41-51.
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2018CTX-M-15-Producing Shewanella Species Clinical Isolate Expressing OXA-535, a Chromosome-Encoded OXA-48 Variant, Putative Progenitor of the Plasmid-Encoded OXA-436., Antimicrob Agents Chemother 2018 01; 62(1): .
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2018Transcriptional Landscape of a blaKPC-2 Plasmid and Response to Imipenem Exposure in Escherichia coli TOP10., Front Microbiol 2018 ; 9(): 2929.
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2017Parallel Evolution of Group B Streptococcus Hypervirulent Clonal Complex 17 Unveils New Pathoadaptive Mutations., mSystems ; 2(5): .
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2017OXA-244-Producing Escherichia coli Isolates, a Challenge for Clinical Microbiology Laboratories., Antimicrob Agents Chemother 2017 09; 61(9): .
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2017Serum resistance and phase variation of a nasopharyngeal non-typeable Haemophilus influenzae isolate., Int J Med Microbiol 2017 Feb; 307(2): 139-146.
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2016Streptococcal group B integrative and mobilizable element IMESag-rpsI encodes a functional relaxase involved in its transfer., Open Biol. 2016 Oct;6(10). pii: 160084..
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2016Streptococcus Gallolyticus Subsp. Pasteurianus Infection In A Neonatal Intensive Care Unit., Pediatr Infect Dis J. 2016 Nov;35(11):1272-1275..
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2016Persistence of a dominant bovine lineage of group B Streptococcus reveals genomic signatures of host adaptation, Environ Microbiol. 2016 Nov;18(11):4216-4229.
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2016Chromosomal amplification of the blaOXA-58 carbapenemase gene in a Proteus mirabilis clinical isolate., Epub ahead of print].
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2016Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently., Genome Res 2016 11; 26(11): 1555-1564.
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2016Demography and Intercontinental Spread of the USA300 Community-Acquired Methicillin-Resistant Staphylococcus aureus Lineage., 7(1).
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2015Host specificity in the diversity and transfer of lsa resistance genes in group B Streptococcus, J. Antimicrob. Chemother. 2015 Dec;70(12):3205-13.
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2015Whole-Genome Comparison Uncovers Genomic Mutations between Group B Streptococci Sampled from Infected Newborns and Their Mothers, J. Bacteriol. 2015 Oct;197(20):3354-66.
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2015Complete Genome Sequence of Streptococcus pyogenes emm28 Clinical Isolate M28PF1, Responsible for a Puerperal Fever, Genome Announc 2015;3(4).
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2015Evolution and molecular epidemiology of streptococci, Infect. Genet. Evol. 2015 Jul;33:333.
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2015Analysis of the type II-A CRISPR-Cas system of Streptococcus agalactiae reveals distinctive features according to genetic lineages, Front Genet 2015;6:214.
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2015Single nucleotide resolution RNA-seq uncovers new regulatory mechanisms in the opportunistic pathogen Streptococcus agalactiae, BMC Genomics 2015 May;16:419.
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2015Corrigendum: Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline, Nat Commun 2015 Jan;6:6108.
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2014Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline., Nat Commun 2014 Aug; 5(): 4544.
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2014The diversity of prokaryotic DDE transposases of the mutator superfamily, insertion specificity, and association with conjugation machineries, Genome Biol Evol 2014 Feb;6(2):260-72.
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2013Construction of isogenic mutants in Streptococcus gallolyticus based on the development of new mobilizable vectors, Res. Microbiol. 2013 Dec;164(10):973-8.
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2013Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading, J. Bacteriol. 2013 May;195(9):1979-90.
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2013The Abi-domain protein Abx1 interacts with the CovS histidine kinase to control virulence gene expression in group B Streptococcus, PLoS Pathog. 2013 Feb;9(2):e1003179.
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2012The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome., Mol Microbiol 2012 Sep; 85(6): 1057-71.
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2012Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes, BMC Genomics 2012;13:144.
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2012Rga, a RofA-like regulator, is the major transcriptional activator of the PI-2a pilus in Streptococcus agalactiae, Microb. Drug Resist. 2012 Jun;18(3):286-97.
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2011Molecular characterization of a Streptococcus gallolyticus genomic island encoding a pilus involved in endocarditis, J. Infect. Dis. 2011 Dec;204(12):1960-70.
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2010Genome sequence of Streptococcus gallolyticus: insights into its adaptation to the bovine rumen and its ability to cause endocarditis, J. Bacteriol. 2010 Apr;192(8):2266-76.
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2009NeMeSys: a biological resource for narrowing the gap between sequence and function in the human pathogen Neisseria meningitidis, Genome Biol. 2009;10(10):R110.
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2008Population structure of human isolates of Streptococcus agalactiae from Dakar and Bangui, J. Clin. Microbiol. 2009 Mar;47(3):800-3.
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2008Atypical association of DDE transposition with conjugation specifies a new family of mobile elements, Mol. Microbiol. 2009 Feb;71(4):948-59.
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2008Shaping a bacterial genome by large chromosomal replacements, the evolutionary history of Streptococcus agalactiae, Proc. Natl. Acad. Sci. U.S.A. 2008 Oct;105(41):15961-6.
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2008Transcriptomic analysis of the exit from dormancy of Aspergillus fumigatus conidia, BMC Genomics 2008;9:417.
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2008Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae, J. Bacteriol. 2008 Oct;190(20):6913-7.
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2008Multigenome analysis identifies a worldwide distributed epidemic Legionella pneumophila clone that emerged within a highly diverse species, Genome Res. 2008 Mar;18(3):431-41.
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2008Pathogenomics: an updated European Research Agenda, Infect. Genet. Evol. 2008 May;8(3):386-93.
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2007A naturally occurring gene amplification leading to sulfonamide and trimethoprim resistance in Streptococcus agalactiae, J. Bacteriol. 2008 Jan;190(2):672-80.
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2007Comparative transcriptome analysis of Listeria monocytogenes strains of the two major lineages reveals differences in virulence, cell wall, and stress response., Appl Environ Microbiol 2007 Oct; 73(19): 6078-88.
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2006Genetic diversity of Listeria monocytogenes recovered from infected persons and pork, seafood and dairy products on retail sale in France during 2000 and 2001, Int. J. Food Microbiol. 2007 Mar;114(2):187-94.
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2006Specific regions of genome plasticity and genetic diversity of the commensal Escherichia coli A0 34/86, Int. J. Med. Microbiol. 2006 Dec;296(8):541-6.
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2006Genomic diversity and evolution within the species Streptococcus agalactiae, Microbes Infect. 2006 Apr;8(5):1227-43.
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2005The SrtA Sortase of Streptococcus agalactiae is required for cell wall anchoring of proteins containing the LPXTG motif, for adhesion to epithelial cells, and for colonization of the mouse intestine, Infect. Immun. 2005 Jun;73(6):3342-50.
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2005Complete nucleotide sequence of the LE1 prophage from the spirochete Leptospira biflexa and characterization of its replication and partition functions, J. Bacteriol. 2005 Jun;187(12):3931-40.
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2005Characterization of the flexible genome complement of the commensal Escherichia coli strain A0 34/86 (O83 : K24 : H31)., Microbiology (Reading) 2005 Feb; 151(Pt 2): 385-398.
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2004Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity, Nat. Genet. 2004 Nov;36(11):1165-73.
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2004Differentiation of the major Listeria monocytogenes serovars by multiplex PCR, J. Clin. Microbiol. 2004 Aug;42(8):3819-22.
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2004Taxonomic characterization of nine strains isolated from clinical and environmental specimens, and proposal of Corynebacterium tuberculostearicum sp. nov., Int J Syst Evol Microbiol 2004 Jul; 54(Pt 4): 1055-1061.
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2004DNA macroarray for identification and typing of Staphylococcus aureus isolates, J. Clin. Microbiol. 2004 May;42(5):2054-64.
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2004New aspects regarding evolution and virulence of Listeria monocytogenes revealed by comparative genomics and DNA arrays, Infect. Immun. 2004 Feb;72(2):1072-83.
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2004Macro-array and bioinformatic analyses reveal mycobacterial ‘core’ genes, variation in the ESAT-6 gene family and new phylogenetic markers for the Mycobacterium tuberculosis complex, Microbiology (Reading, Engl.) 2004 Feb;150(Pt 2):483-96.
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2003Structural and functional genomics and evolutionary relationships in the cluster of genes encoding murine 2′,5′-oligoadenylate synthetases, Genomics 2003 Nov;82(5):537-52.
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2003The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens, Nat. Biotechnol. 2003 Nov;21(11):1307-13.
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2003Comparison of the genome sequences of Listeria monocytogenes and Listeria innocua: clues for evolution and pathogenicity, FEMS Immunol. Med. Microbiol. 2003 Apr;35(3):207-13.
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2003Transcriptome analysis of Listeria monocytogenes identifies three groups of genes differently regulated by PrfA, Mol. Microbiol. 2003 Mar;47(6):1613-25.
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2002Listeria monocytogenes bile salt hydrolase is a PrfA-regulated virulence factor involved in the intestinal and hepatic phases of listeriosis., Mol Microbiol 2002 Aug; 45(4): 1095-106.
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2002DiffTool: building, visualizing and querying protein clusters, Bioinformatics 2002 Aug;18(8):1143-4.