Sofia is expert in the in silico analysis of viruses and mobile elements. She is funded by ANR Viromet and her project focuses on the diversity of viruses in archaeal methanogens.
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2024Stable coexistence between an archaeal virus and the dominant methanogen of the human gut, Nature Communications, 2024, 15 (1), pp.7702. ⟨10.1038/s41467-024-51946-x⟩.
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2023A compendium of viruses from methanogenic archaea reveals their diversity and adaptations to the gut environment., Nat Microbiol 2023 Nov; 8(11): 2170-2182.
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2022Three families of Asgard archaeal viruses identified in metagenome-assembled genomes, Nat Microbiol 2022 Jul; 7(7): 962-973.
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2021New insights into the diversity and evolution of the archaeal mobilome from three complete genomes of Saccharolobus shibatae, Environ Microbiol 2021 Jun; 23(8):4612-4630.
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2019Virus-borne mini-CRISPR arrays are involved in interviral conflicts, Nat Commun 2019 Nov;10(1):5204.
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2019Integrated mobile genetic elements in Thaumarchaeota, Environ. Microbiol. 2019 Jun;21(6):2056-2078.