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GRAAL: genome assembly from chromosome contact frequencies
Christophe Zimmer (PI)
A software to reconstruct 1D genome structures from 3D contact data obtained from Hi-C experiments. This movie shows the iterative assembly by GRAAL of the Trichoderma reesei genome (right) using contact frequencies determined by […]
2018Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins, Cell 2018 Jan;.
2017Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes, Biotechnol Biofuels 2017;10:151.
2017Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay, Sci Adv 2017 Feb;3(2):e1602105.
2017Generation and Analysis of Chromosomal Contact Maps of Bacteria, Methods Mol. Biol. 2017;1624:75-84.
2016A checkpoint control orchestrates the replication of the two chromosomes of Vibrio cholerae., Sci Adv. 2016 Apr 22;2(4):e1501914. doi: 10.1126/sciadv.1501914.
2016Evidence for actin dual role in regulating chromosome organization and dynamics in yeast, J Cell Sci 2016 : doi: 10.1242/jcs.175745.
2016Generation and Analysis of Chromosomal Contact Maps of Yeast Species, Methods Mol Biol. 2016;1361:227-45.
2015Metagenome Analysis Exploiting High-Throughput Chromosome Conformation Capture (3C) Data, Trends Genet. 2015 Nov;.
2015Spatial reorganization of telomeres in long-lived quiescent cells, Genome Biol. 2015;16(1):206.
2015Genome-wide replication landscape of Candida glabrata, BMC Biol. 2015 Sep;13:69.
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