• 2025
  Kalfon J, Samaran J, Peyré G, Cantini L, scPRINT: pre-training on 50 million cells allows robust gene network predictions., Nat Commun 2025 Apr; 16(1): 3607.
• 2025
  Camard L, Stephen T, Yahia-Cherbal H, Guillemot V, Mella S, Baillet V, Lopez-Maestre H, Capocefalo D, Cantini L, Leloup C, Marsande J, Garro K, Sienes Bailo J, Dangien A, Pietrosemoli N, Hasan M, Wang H, Eckle SBG, Fourie AM, Greving C, Joyce-Shaikh B, Parker R, Cua DJ, Bianchi E, Rogge L, IL-23 tunes inflammatory functions of human mucosal-associated invariant T cells., iScience 2025 Feb; 28(2): 111898.
• 2024
  Samaran J, Peyré G, Cantini L, scConfluence: single-cell diagonal integration with regularized Inverse Optimal Transport on weakly connected features., Nat Commun 2024 Sep; 15(1): 7762.
• 2024
  Trimbour R, Deutschmann IM, Cantini L, Molecular mechanisms reconstruction from single-cell multi-omics data with HuMMuS., Bioinformatics 2024 Mar; (): .
• 2023
  Huizing GJ, Deutschmann IM, Peyré G, Cantini L, Paired single-cell multi-omics data integration with Mowgli., Nat Commun 2023 Nov; 14(1): 7711.
• 2022
  Huizing GJ, Peyré G, Cantini L, , Optimal Transport improves cell-cell similarity inference in single-cell omics data., Bioinformatics 2022 Feb; 38(8): 2169-77.
• 2021
  Cantini L, Zakeri P, Hernandez C, Naldi A, Thieffry D, Remy E, Baudot A, , Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer., Nat Commun 2021 Jan; 12(1): 124.
• 2021
  Kang Y, Thieffry D, Cantini L, , Evaluating the Reproducibility of Single-Cell Gene Regulatory Network Inference Algorithms., Front Genet 2021 ; 12(): 617282.