• 2024
  Brault A, Pontais I, Enouf V, Debeuret C, Bloch E, Paireau J, Rameix-Welti MA, White M, Baudemont G, Lina B, Parent du Châtelet I, Casalegno JS, Vaux S, Cauchemez S, Effect of nirsevimab on hospitalisations for respiratory syncytial virus bronchiolitis in France, 2023-24: a modelling study., Lancet Child Adolesc Health 2024 Aug; (): .
• 2024
  Layan M, Hens N, de Hoog MLA, Bruijning-Verhagen PCJL, Cowling BJ, Cauchemez S, Addressing current limitations of household transmission studies by collecting contact data., Am J Epidemiol 2024 Jun; (): .
• 2024
  Chen Y, Xu Y, Wang L, Liang Y, Li N, Lourenço J, Yang Y, Lin Q, Wang L, Zhao H, Cazelles B, Song H, Liu Z, Wang Z, Brady OJ, Cauchemez S, Tian H, Indian Ocean temperature anomalies predict long-term global dengue trends., Science 2024 May; 384(6696): 639-646.
• 2023
  Andronico A, Menudier L, Salje H, Vincent M, Paireau J, de Valk H, Gallian P, Pastorino B, Brady O, de Lamballerie X, Lazarus C, Paty MC, Vilain P, Noel H, Cauchemez S, Comparing the Performance of Three Models Incorporating Weather Data to Forecast Dengue Epidemics in Reunion Island, 2018-2019., J Infect Dis 2023 Nov; (): .
• 2023
  Tan-Lhernould L, Tamandjou C, Deschamps G, Platon J, Sommen C, Chereau F, Parent du Châtelet I, Cauchemez S, Vaux S, Paireau J, Impact of vaccination against severe COVID-19 in the French population aged 50 years and above: a retrospective population-based study., BMC Med 2023 Nov; 21(1): 426.
• 2023
  Franconeri L, Antona D, Cauchemez S, Lévy-Bruhl D, Paireau J, Two-dose measles vaccine effectiveness remains high over time: A French observational study, 2017-2019., Vaccine 2023 Aug; (): .
• 2023
  Woudenberg T, Pinaud L, Garcia L, Tondeur L, Pelleau S, De Thoisy A, Donnadieu F, Backovic M, Attia M, Hozé N, Duru C, Koffi AD, Castelain S, Ungeheuer MN, Fernandes Pellerin S, Planas D, Bruel T, Cauchemez S, Schwartz O, Fontanet A, White M, Estimated protection against COVID-19 based on predicted neutralisation titres from multiple antibody measurements in a longitudinal cohort, France, April 2020 to November 2021., Euro Surveill 2023 Jun; 28(25): .
• 2023
  Galmiche S, Cortier T, Charmet T, Schaeffer L, Chény O, von Platen C, Lévy A, Martin S, Omar F, David C, Mailles A, Carrat F, Cauchemez S, Fontanet A, SARS-CoV-2 incubation period across variants of concern, individual factors, and circumstances of infection in France: a case series analysis from the ComCor study., Lancet Microbe 2023 Apr; (): .
• 2023
  Brault A, Tran-Kiem C, Couteaux C, Olié V, Paireau J, Yazdanpanah Y, Ghosn J, Martin-Blondel G, Bosetti P, Cauchemez S, , Modelling the end of a Zero-COVID strategy using nirmatrelvir/ritonavir, vaccination and NPIs in Wallis and Futuna., Lancet Reg Health West Pac 2023 Jan; 30(): 100634.
• 2023
  Layan M, Müller NF, Dellicour S, De Maio N, Bourhy H, Cauchemez S, Baele G, Impact and mitigation of sampling bias to determine viral spread: Evaluating discrete phylogeography through CTMC modeling and structured coalescent model approximations., Virus Evol 2023 ; 9(1): vead010.
• 2022
  Bailly S, Hozé N, Bisser S, Zhu-Soubise A, Fritzell C, Fernandes-Pellerin S, Mbouangoro A, Rousset D, Djossou F, Cauchemez S, Flamand C,, Transmission dynamics of Q fever in French Guiana: A population-based cross-sectional study., Lancet Reg Health Am 2022 Dec; 16(): 100385.
• 2022
  Ten Bosch Q, Andrianaivoarimanana V, Ramasindrazana B, Mikaty G, Rakotonanahary RJ, Nikolay B, Rahajandraibe S, Feher M, Grassin Q, Paireau J, Rahelinirina S, Randremanana R, Rakotoarimanana F, Melocco M, Rasolofo V, Pizarro-Cerda J, Le Guern AS, Bertherat E, Ratsitorahina M, Spiegel A, Baril L, Rajerison M, Cauchemez S, , Analytical framework to evaluate and optimize the use of imperfect diagnostics to inform outbreak response: Application to the 2017 plague epidemic in Madagascar., PLoS Biol 2022 Aug; 20(8): e3001736.
• 2022
  Blanquart F, Hozé N, Cowling BJ, Débarre F, Cauchemez S, , Selection for infectivity profiles in slow and fast epidemics, and the rise of SARS-CoV-2 variants., Elife 2022 May; 11(): .
• 2022
  Paireau J, Andronico A, Hozé N, Layan M, Crépey P, Roumagnac A, Lavielle M, Boëlle PY, Cauchemez S, , An ensemble model based on early predictors to forecast COVID-19 health care demand in France., Proc Natl Acad Sci U S A 2022 May; 119(18): e2103302119.
• 2022
  Lefrancq N, Bouchez V, Fernandes N, Barkoff AM, Bosch T, Dalby T, Åkerlund T, Darenberg J, Fabianova K, Vestrheim DF, Fry NK, González-López JJ, Gullsby K, Habington A, He Q, Litt D, Martini H, Piérard D, Stefanelli P, Stegger M, Zavadilova J, Armatys N, Landier A, Guillot S, Hong SL, Lemey P, Parkhill J, Toubiana J, Cauchemez S, Salje H, Brisse S, , Global spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis., Sci Transl Med 2022 Apr; 14(642): eabn3253.
• 2022
  Tsang TK, Perera RAPM, Fang VJ, Wong JY, Shiu EY, So HC, Ip DKM, Malik Peiris JS, Leung GM, Cowling BJ, Cauchemez S, , Reconstructing antibody dynamics to estimate the risk of influenza virus infection., Nat Commun 2022 Mar; 13(1): 1557.
• 2022
  Grant R, Charmet T, Schaeffer L, Galmiche S, Madec Y, Von Platen C, Chény O, Omar F, David C, Rogoff A, Paireau J, Cauchemez S, Carrat F, Septfons A, Levy-Bruhl D, Mailles A, Fontanet A, , Impact of SARS-CoV-2 Delta variant on incubation, transmission settings and vaccine effectiveness: Results from a nationwide case-control study in France., Lancet Reg Health Eur 2022 Feb; 13(): 100278.
• 2022
  Paireau J, Mailles A, Eisenhauer C, de Laval F, Delon F, Bosetti P, Salje H, Pontiès V, Cauchemez S, , Early chains of transmission of COVID-19 in France, January to March 2020., Euro Surveill 2022 02; 27(6): .
• 2022
  Bosetti P, Tran Kiem C, Andronico A, Colizza V, Yazdanpanah Y, Fontanet A, Benamouzig D, Cauchemez S, , Epidemiology and control of SARS-CoV-2 epidemics in partially vaccinated populations: a modeling study applied to France., BMC Med 2022 01; 20(1): 33.
• 2022
  Bosetti P, Tran Kiem C, Andronico A, Paireau J, Levy-Bruhl D, Alter L, Fontanet A, Cauchemez S, , Impact of booster vaccination on the control of COVID-19 Delta wave in the context of waning immunity: application to France in the winter 2021/22., Euro Surveill 2022 01; 27(1): .
• 2021
  Moura A, Lefrancq N, Wirth T, Leclercq A, Borges V, Gilpin B, Dallman TJ, Frey J, Franz E, Nielsen EM, Thomas J, Pightling A, Howden BP, Tarr CL, Gerner-Smidt P, Cauchemez S, Salje H, Brisse S, Lecuit M, , , Emergence and global spread of Listeria monocytogenes main clinical clonal complex., Sci Adv 2021 Dec; 7(49): eabj9805.
• 2021
  Bosetti P, Huynh BT, Abdou AY, Sanchez M, Eisenhauer C, Courtejoie N, Accardo J, Salje H, Guillemot D, Moslonka-Lefebvre M, Boëlle PY, Béraud G, Cauchemez S, Opatowski L, , Lockdown impact on age-specific contact patterns and behaviours, France, April 2020., Euro Surveill 2021 12; 26(48): .
• 2021
  Tran Kiem C, Bosetti P, Paireau J, Crépey P, Salje H, Lefrancq N, Fontanet A, Benamouzig D, Boëlle PY, Desenclos JC, Opatowski L, Cauchemez S, , SARS-CoV-2 transmission across age groups in France and implications for control., Nat Commun 2021 11; 12(1): 6895.
• 2021
  Hozé N, Diarra I, Sangaré AK, Pastorino B, Pezzi L, Kouriba B, Sagara I, Dabo A, Djimdé A, Thera MA, Doumbo OK, de Lamballerie X, Cauchemez S, , Model-based assessment of Chikungunya and O’nyong-nyong virus circulation in Mali in a serological cross-reactivity context., Nat Commun 2021 Nov; 12(1): 6735.
• 2021
  Charmet T, Schaeffer L, Grant R, Galmiche S, Chény O, Von Platen C, Maurizot A, Rogoff A, Omar F, David C, Septfons A, Cauchemez S, Gaymard A, Lina B, Lefrancois LH, Enouf V, van der Werf S, Mailles A, Levy-Bruhl D, Carrat F, Fontanet A, , Impact of original, B.1.1.7, and B.1.351/P.1 SARS-CoV-2 lineages on vaccine effectiveness of two doses of COVID-19 mRNA vaccines: Results from a nationwide case-control study in France., Lancet Reg Health Eur 2021 Sep; 8(): 100171.
• 2021
  Kraemer MUG, Hill V, Ruis C, Dellicour S, Bajaj S, McCrone JT, Baele G, Parag KV, Battle AL, Gutierrez B, Jackson B, Colquhoun R, O'Toole Á, Klein B, Vespignani A, , Volz E, Faria NR, Aanensen DM, Loman NJ, du Plessis L, Cauchemez S, Rambaut A, Scarpino SV, Pybus OG, , Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence., Science 2021 08; 373(6557): 889-895.
• 2021
  Cauchemez S, Kiem CT, , Managing COVID-19 importation risks in a heterogeneous world., Lancet Public Health 2021 Aug; (): .
• 2021
  Galmiche S, Charmet T, Schaeffer L, Paireau J, Grant R, Chény O, Von Platen C, Maurizot A, Blanc C, Dinis A, Martin S, Omar F, David C, Septfons A, Cauchemez S, Carrat F, Mailles A, Levy-Bruhl D, Fontanet A, , Exposures associated with SARS-CoV-2 infection in France: A nationwide online case-control study., Lancet Reg Health Eur 2021 Aug; 7(): 100148.
• 2021
  Tran Kiem C, Massonnaud CR, Levy-Bruhl D, Poletto C, Colizza V, Bosetti P, Fontanet A, Gabet A, Olié V, Zanetti L, Boëlle PY, Crépey P, Cauchemez S, , A modelling study investigating short and medium-term challenges for COVID-19 vaccination: From prioritisation to the relaxation of measures., EClinicalMedicine 2021 Aug; 38(): 101001.
• 2021
  Salje H, Alera MT, Chua MN, Hunsawong T, Ellison D, Srikiatkhachorn A, Jarman RG, Gromowski GD, Rodriguez-Barraquer I, Cauchemez S, Cummings DAT, Macareo L, Yoon IK, Fernandez S, Rothman AL, , Evaluation of the extended efficacy of the Dengvaxia vaccine against symptomatic and subclinical dengue infection., Nat Med 2021 Aug; 27(8): 1395-1400.
• 2021
  Cauchemez S, Bosetti P, Kiem CT, Mouro V, Consoli A, Fontanet A, , Education and mental health: good reasons to vaccinate children., Lancet 2021 07; 398(10298): 387.
• 2021
  Andrianaivoarimanana V, Wagner DM, Birdsell DN, Nikolay B, Rakotoarimanana F, Randriantseheno LN, Vogler AJ, Sahl JW, Hall CM, Somprasong N, Cauchemez S, Schweizer HP, Razafimandimby H, Rogier C, Rajerison M, , Transmission of antimicrobial resistant Yersinia pestis during a pneumonic plague outbreak., Clin Infect Dis 2021 Jul; (): .
• 2021
  Bailly S, Rousset D, Fritzell C, Hozé N, Ben Achour S, Berthelot L, Enfissi A, Vanhomwegen J, Salje H, Fernandes-Pellerin S, Saout M, Lavergne A, Manuguerra JC, Carod JF, Djossou F, Cauchemez S, Flamand C, , Spatial Distribution and Burden of Emerging Arboviruses in French Guiana., Viruses 2021 07; 13(7): .
• 2021
  Tran Kiem C, Andronico A, Bosetti P, Paireau J, Alter L, Boëlle PY, Fontanet A, Lévy-Bruhl D, Cauchemez S, , Benefits and risks associated with different uses of the COVID-19 vaccine Vaxzevria: a modelling study, France, May to September 2021., Euro Surveill 2021 07; 26(26): .
• 2021
  Landier J, Paireau J, Rebaudet S, Legendre E, Lehot L, Fontanet A, Cauchemez S, Gaudart J, , Cold and dry winter conditions are associated with greater SARS-CoV-2 transmission at regional level in western countries during the first epidemic wave., Sci Rep 2021 06; 11(1): 12756.
• 2021
  Tran Kiem C, Crépey P, Bosetti P, Levy Bruhl D, Yazdanpanah Y, Salje H, Boëlle PY, Cauchemez S, , Lockdown as a last resort option in case of COVID-19 epidemic rebound: a modelling study., Euro Surveill 2021 06; 26(22): .
• 2021
  Lefrancq N, Paireau J, Hozé N, Courtejoie N, Yazdanpanah Y, Bouadma L, Boëlle PY, Chereau F, Salje H, Cauchemez S, , Evolution of outcomes for patients hospitalised during the first 9 months of the SARS-CoV-2 pandemic in France: A retrospective national surveillance data analysis., Lancet Reg Health Eur 2021 Jun; 5(): 100087.
• 2021
  Travier L, Alonso M, Andronico A, Hafner L, Disson O, Lledo PM, Cauchemez S, Lecuit M, Neonatal susceptibility to meningitis results from the immaturity of epithelial barriers and gut microbiota., Cell Rep 2021 Jun; 35(13): 109319.
• 2021
  Lapidus N, Paireau J, Levy-Bruhl D, de Lamballerie X, Severi G, Touvier M, Zins M, Cauchemez S, Carrat F, , , Do not neglect SARS-CoV-2 hospitalization and fatality risks in the middle-aged adult population., Infect Dis Now 2021 Jun; 51(4): 380-382.
• 2021
  Layan M, Dellicour S, Baele G, Cauchemez S, Bourhy H, , Mathematical modelling and phylodynamics for the study of dog rabies dynamics and control: A scoping review., PLoS Negl Trop Dis 2021 May; 15(5): e0009449.
• 2021
  Hozé N, Paireau J, Lapidus N, Tran Kiem C, Salje H, Severi G, Touvier M, Zins M, de Lamballerie X, Lévy-Bruhl D, Carrat F, Cauchemez S, , Monitoring the proportion of the population infected by SARS-CoV-2 using age-stratified hospitalisation and serological data: a modelling study., Lancet Public Health 2021 Apr; (): .
• 2021
  Salje H, Wesolowski A, Brown TS, Kiang MV, Berry IM, Lefrancq N, Fernandez S, Jarman RG, Ruchusatsawat K, Iamsirithaworn S, Vandepitte WP, Suntarattiwong P, Read JM, Klungthong C, Thaisomboonsuk B, Engø-Monsen K, Buckee C, Cauchemez S, Cummings DAT, , Reconstructing unseen transmission events to infer dengue dynamics from viral sequences., Nat Commun 2021 03; 12(1): 1810.
• 2021
  Andronico A, Tran Kiem C, Paireau J, Succo T, Bosetti P, Lefrancq N, Nacher M, Djossou F, Sanna A, Flamand C, Salje H, Rousseau C, Cauchemez S, , Evaluating the impact of curfews and other measures on SARS-CoV-2 transmission in French Guiana., Nat Commun 2021 03; 12(1): 1634.
• 2021
  Gaymard A, Bosetti P, Feri A, Destras G, Enouf V, Andronico A, Burrel S, Behillil S, Sauvage C, Bal A, Morfin F, Van Der Werf S, Josset L, , , Blanquart F, Coignard B, Cauchemez S, Lina B, , Early assessment of diffusion and possible expansion of SARS-CoV-2 Lineage 20I/501Y.V1 (B.1.1.7, variant of concern 202012/01) in France, January to March 2021., Euro Surveill 2021 03; 26(9): .
• 2021
  Wei X, Yang J, Gao L, Wang L, Liao Q, Qiu Q, Luo K, Yu S, Zhou Y, Liu F, Chen Q, Zhang J, Dai B, Yang H, Zhou J, Xing W, Chen X, He M, Ren L, Guo J, Luo L, Wu P, Chen Z, van Doorn HR, Cauchemez S, Cowling BJ, Yu H, , The transfer and decay of maternal antibodies against enterovirus A71, and dynamics of antibodies due to later natural infections in Chinese infants: a longitudinal, paired mother-neonate cohort study., Lancet Infect Dis 2021 03; 21(3): 418-426.
• 2021
  O'Driscoll M, Ribeiro Dos Santos G, Wang L, Cummings DAT, Azman AS, Paireau J, Fontanet A, Cauchemez S, Salje H, , Age-specific mortality and immunity patterns of SARS-CoV-2., Nature 2021 02; 590(7844): 140-145.
• 2021
  Bosetti P, Kiem CT, Yazdanpanah Y, Fontanet A, Lina B, Colizza V, Cauchemez S, , Impact of mass testing during an epidemic rebound of SARS-CoV-2: a modelling study using the example of France., Euro Surveill 2021 01; 26(1): .
• 2021
  Kengne-Nde C, Tejiokem MC, Orne-Gliemann J, Melingui B, Koki Ndombo P, Essounga NA, Bissek AC, Cauchemez S, Tchendjou PT, , Couple oriented counselling improves male partner involvement in sexual and reproductive health of a couple: Evidence from the ANRS PRENAHTEST randomized trial., PLoS One 2021 ; 16(7): e0255330.
• 2020
  Razafimahatratra SL, Wesolowski A, Rafetrarivony L, Heraud JM, Jones FK, Cauchemez S, Razafindratsimandresy R, Raharinantoanina SJ, Harimanana A, Collard JM, Metcalf CJE, Seroprevalence of pertussis in Madagascar and implications for vaccination., Epidemiol Infect 2020 Nov; 148(): e283.
• 2020
  Adam DC, Wu P, Wong JY, Lau EHY, Tsang TK, Cauchemez S, Leung GM, Cowling BJ, , Clustering and superspreading potential of SARS-CoV-2 infections in Hong Kong., Nat Med 2020 11; 26(11): 1714-1719.
• 2020
  Cauchemez S, Kiem CT, Paireau J, Rolland P, Fontanet A, , Lockdown impact on COVID-19 epidemics in regions across metropolitan France., Lancet 2020 10; 396(10257): 1068-1069.
• 2020
  Raherindrasana A, Metcalf CJ, Heraud JM, Cauchemez S, Winter A, Wesolowski A, Razafindratsimandresy R, Randriamampionona L, Rafalimanantsoa SA, Masembe Y, Ndiaye C, Rakotonirina J, , Towards better targeting: lessons from a posthoneymoon measles outbreak in Madagascar, 2018-2019., BMJ Glob Health 2020 10; 5(10): .
• 2020
  Fontanet A, Cauchemez S, , COVID-19 herd immunity: where are we?, Nat Rev Immunol 2020 10; 20(10): 583-584.
• 2020
  Metcalf CJE, Wesolowski A, Winter AK, Lessler J, Cauchemez S, Moss WJ, McLean AR, Grenfell BT, , Using Serology to Anticipate Measles Post-honeymoon Period Outbreaks., Trends Microbiol 2020 08; 28(8): 597-600.
• 2020
  Salje H, Tran Kiem C, Lefrancq N, Courtejoie N, Bosetti P, Paireau J, Andronico A, Hozé N, Richet J, Dubost CL, Le Strat Y, Lessler J, Levy-Bruhl D, Fontanet A, Opatowski L, Boelle PY, Cauchemez S, , Estimating the burden of SARS-CoV-2 in France., Science 2020 07; 369(6500): 208-211.
• 2020
  Lee KH, Nikolay B, Sazzad HMS, Hossain MJ, Khan AKMD, Rahman M, Satter SM, Nichol ST, Klena JD, Pulliam JRC, Kilpatrick AM, Sultana S, Afroj S, Daszak P, Luby S, Cauchemez S, Salje H, Gurley ES, , Changing Contact Patterns Over Disease Progression: Nipah Virus as a Case Study., J Infect Dis 2020 07; 222(3): 438-442.
• 2020
  Besombes C, Njouom R, Paireau J, Lachenal G, Texier G, Tejiokem M, Cauchemez S, Pépin J, Fontanet A, , The epidemiology of hepatitis delta virus infection in Cameroon., Gut 2020 07; 69(7): 1294-1300.
• 2020
  Nguyen-Van-Tam JS, Killingley B, Enstone J, Hewitt M, Pantelic J, Grantham ML, Bueno de Mesquita PJ, Lambkin-Williams R, Gilbert A, Mann A, Forni J, Noakes CJ, Levine MZ, Berman L, Lindstrom S, Cauchemez S, Bischoff W, Tellier R, Milton DK, , , Minimal transmission in an influenza A (H3N2) human challenge-transmission model within a controlled exposure environment., PLoS Pathog 2020 07; 16(7): e1008704.
• 2020
  Hozé N, Salje H, Rousset D, Fritzell C, Vanhomwegen J, Bailly S, Najm M, Enfissi A, Manuguerra JC, Flamand C, Cauchemez S, , Reconstructing Mayaro virus circulation in French Guiana shows frequent spillovers., Nat Commun 2020 06; 11(1): 2842.
• 2020
  Nikolay B, Salje H, Khan AKMD, Sazzad HMS, Satter SM, Rahman M, Doan S, Knust B, Flora MS, Luby SP, Cauchemez S, Gurley ES, , A Framework to Monitor Changes in Transmission and Epidemiology of Emerging Pathogens: Lessons From Nipah Virus., J Infect Dis 2020 05; 221(Suppl 4): S363-S369.
• 2020
  Diarra I, Nurtop E, Sangaré AK, Sagara I, Pastorino B, Sacko S, Zeguimé A, Coulibaly D, Fofana B, Gallian P, Priet S, Drexler JF, Failloux AB, Dabo A, Thera MA, Djimdé A, Kouriba B, Cauchemez S, de Lamballerie X, Hozé N, Doumbo OK, , Zika Virus Circulation in Mali., Emerg Infect Dis 2020 05; 26(5): 945-952.
• 2020
  Du Z, Wang L, Cauchemez S, Xu X, Wang X, Cowling BJ, Meyers LA, , Risk for Transportation of Coronavirus Disease from Wuhan to Other Cities in China., Emerg Infect Dis 2020 05; 26(5): 1049-1052.
• 2020
  Kraemer MUG, Pigott DM, Hill SC, Vanderslott S, Reiner RC, Stasse S, Brownstein JS, Gutierrez B, Dennig F, Hay SI, Wint GRW, Pybus OG, Castro MC, Vinck P, Pham PN, Nilles EJ, Cauchemez S, , Dynamics of conflict during the Ebola outbreak in the Democratic Republic of the Congo 2018-2019., BMC Med 2020 04; 18(1): 113.
• 2020
  Kraemer MUG, Yang CH, Gutierrez B, Wu CH, Klein B, Pigott DM, , du Plessis L, Faria NR, Li R, Hanage WP, Brownstein JS, Layan M, Vespignani A, Tian H, Dye C, Cauchemez S, Pybus OG, Scarpino SV, , The effect of human mobility and control measures on the COVID-19 epidemic in China., medRxiv 2020 Mar; (): .
• 2020
  Chen J, Zhu H, Horby PW, Wang Q, Zhou J, Jiang H, Liu L, Zhang T, Zhang Y, Chen X, Deng X, Nikolay B, Wang W, Cauchemez S, Guan Y, Uyeki TM, Yu H, , Specificity, kinetics and longevity of antibody responses to avian influenza A(H7N9) virus infection in humans., J Infect 2020 03; 80(3): 310-319.
• 2020
  Du Z, Wang L, Cauchemez S, Xu X, Wang X, Cowling BJ, Meyers LA, , Risk for Transportation of 2019 Novel Coronavirus (COVID-19) from Wuhan to Cities in China., medRxiv 2020 Feb; (): .
• 2020
  Pellis L, Cauchemez S, Ferguson NM, Fraser C, , Systematic selection between age and household structure for models aimed at emerging epidemic predictions., Nat Commun 2020 02; 11(1): 906.
• 2020
  Sow A, Nikolay B, Faye O, Cauchemez S, Cano J, Diallo M, Faye O, Sadio B, Ndiaye O, Weaver SC, Dia AT, Sall AA, Malvy D, , Changes in the Transmission Dynamic of Chikungunya Virus in Southeastern Senegal., Viruses 2020 02; 12(2): .
• 2020
  Capai L, Hozé N, Chiaroni J, Gross S, Djoudi R, Charrel R, Izopet J, Bosseur F, Priet S, Cauchemez S, de Lamballerie X, Falchi A, Gallian P, , Seroprevalence of hepatitis E virus among blood donors on Corsica, France, 2017., Euro Surveill 2020 02; 25(5): .
• 2019
  Thompson RN, Stockwin JE, van Gaalen RD, Polonsky JA, Kamvar ZN, Demarsh PA, Dahlqwist E, Li S, Miguel E, Jombart T, Lessler J, Cauchemez S, Cori A, , Improved inference of time-varying reproduction numbers during infectious disease outbreaks., Epidemics 2019 12; 29(): 100356.
• 2019
  Cousien A, Ledien J, Souv K, Leang R, Huy R, Fontenille D, Ly S, Duong V, Dussart P, Piola P, Cauchemez S, Tarantola A, , Predicting Dengue Outbreaks in Cambodia., Emerg Infect Dis 2019 12; 25(12): 2281-2283.
• 2019
  Courtejoie N, Cauchemez S, Zanella G, Durand B, , A network-based approach to modelling bluetongue spread in France., Prev Vet Med 2019 Oct; 170(): 104744.
• 2019
  Donnelly CA, Malik MR, Elkholy A, Cauchemez S, Van Kerkhove MD, , Worldwide Reduction in MERS Cases and Deaths since 2016., Emerg Infect Dis 2019 09; 25(9): 1758-1760.
• 2019
  Andronico A, Courcoul A, Bronner A, Scoizec A, Lebouquin-Leneveu S, Guinat C, Paul MC, Durand B, Cauchemez S, , Highly pathogenic avian influenza H5N8 in south-west France 2016-2017: A modeling study of control strategies., Epidemics 2019 09; 28(): 100340.
• 2019
  Flamand C, Bailly S, Fritzell C, Berthelot L, Vanhomwegen J, Salje H, Paireau J, Matheus S, Enfissi A, Fernandes-Pellerin S, Djossou F, Linares S, Carod JF, Kazanji M, Manuguerra JC, Cauchemez S, Rousset D, , Impact of Zika Virus Emergence in French Guiana: A Large General Population Seroprevalence Survey., J Infect Dis 2019 11; 220(12): 1915-1925.
• 2019
  Cousien A, Abel S, Monthieux A, Andronico A, Calmont I, Cervantes M, Césaire R, Gallian P, de Lamballerie X, Laouénan C, Najioullah F, Pierre-François S, Pircher M, Salje H, Ten Bosch QA, Cabié A, Cauchemez S, , Assessing Zika Virus Transmission Within Households During an Outbreak in Martinique, 2015-2016., Am J Epidemiol 2019 07; 188(7): 1389-1396.
• 2019
  Bernard-Stoecklin S, Nikolay B, Assiri A, Bin Saeed AA, Ben Embarek PK, El Bushra H, Ki M, Malik MR, Fontanet A, Cauchemez S, Van Kerkhove MD, , Comparative Analysis of Eleven Healthcare-Associated Outbreaks of Middle East Respiratory Syndrome Coronavirus (Mers-Cov) from 2015 to 2017., Sci Rep 2019 05; 9(1): 7385.
• 2019
  Nikolay B, Salje H, Hossain MJ, Khan AKMD, Sazzad HMS, Rahman M, Daszak P, Ströher U, Pulliam JRC, Kilpatrick AM, Nichol ST, Klena JD, Sultana S, Afroj S, Luby SP, Cauchemez S, Gurley ES, , Transmission of Nipah Virus – 14 Years of Investigations in Bangladesh., N Engl J Med 2019 05; 380(19): 1804-1814.
• 2019
  Kraemer MUG, Reiner RC, Brady OJ, Messina JP, Gilbert M, Pigott DM, Yi D, Johnson K, Earl L, Marczak LB, Shirude S, Weaver ND, Bisanzio D, Perkins TA, Lai S, Lu X, Jones P, Coelho GE, Carvalho RG, Van Bortel W, Marsboom C, Hendrickx G, Schaffner F, Moore CG, Nax HH, Bengtsson L, Wetter E, Tatem AJ, Brownstein JS, Smith DL, Lambrechts L, Cauchemez S, Linard C, Faria NR, Pybus OG, Scott TW, Liu Q, Yu H, Wint GRW, Hay SI, Golding N, , Publisher Correction: Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus., Nat Microbiol 2019 May; 4(5): 901.
• 2019
  Kraemer MUG, Reiner RC, Brady OJ, Messina JP, Gilbert M, Pigott DM, Yi D, Johnson K, Earl L, Marczak LB, Shirude S, Weaver ND, Bisanzio D, Perkins TA, Lai S, Lu X, Jones P, Coelho GE, Carvalho RG, Van Bortel W, Marsboom C, Hendrickx G, Schaffner F, Moore CG, Nax HH, Bengtsson L, Wetter E, Tatem AJ, Brownstein JS, Smith DL, Lambrechts L, Cauchemez S, Linard C, Faria NR, Pybus OG, Scott TW, Liu Q, Yu H, Wint GRW, Hay SI, Golding N, , Publisher Correction: Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus., Nat Microbiol 2019 May; 4(5): 900.
• 2019
  Churakov M, Villabona-Arenas CJ, Kraemer MUG, Salje H, Cauchemez S, , Spatio-temporal dynamics of dengue in Brazil: Seasonal travelling waves and determinants of regional synchrony., PLoS Negl Trop Dis 2019 04; 13(4): e0007012.
• 2019
  Randremanana R, Andrianaivoarimanana V, Nikolay B, Ramasindrazana B, Paireau J, Ten Bosch QA, Rakotondramanga JM, Rahajandraibe S, Rahelinirina S, Rakotomanana F, Rakotoarimanana FM, Randriamampionona LB, Razafimbia V, De Dieu Randria MJ, Raberahona M, Mikaty G, Le Guern AS, Rakotonjanabelo LA, Ndiaye CF, Rasolofo V, Bertherat E, Ratsitorahina M, Cauchemez S, Baril L, Spiegel A, Rajerison M, , Epidemiological characteristics of an urban plague epidemic in Madagascar, August-November, 2017: an outbreak report., Lancet Infect Dis 2019 05; 19(5): 537-545.
• 2019
  Kraemer MUG, Reiner RC, Brady OJ, Messina JP, Gilbert M, Pigott DM, Yi D, Johnson K, Earl L, Marczak LB, Shirude S, Davis Weaver N, Bisanzio D, Perkins TA, Lai S, Lu X, Jones P, Coelho GE, Carvalho RG, Van Bortel W, Marsboom C, Hendrickx G, Schaffner F, Moore CG, Nax HH, Bengtsson L, Wetter E, Tatem AJ, Brownstein JS, Smith DL, Lambrechts L, Cauchemez S, Linard C, Faria NR, Pybus OG, Scott TW, Liu Q, Yu H, Wint GRW, Hay SI, Golding N, , Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus., Nat Microbiol 2019 05; 4(5): 854-863.
• 2019
  Cauchemez S, Hoze N, Cousien A, Nikolay B, Ten Bosch Q, , How Modelling Can Enhance the Analysis of Imperfect Epidemic Data., Trends Parasitol 2019 05; 35(5): 369-379.
• 2019
  Tsang TK, Fang VJ, Ip DKM, Perera RAPM, So HC, Leung GM, Peiris JSM, Cowling BJ, Cauchemez S, , Indirect protection from vaccinating children against influenza in households., Nat Commun 2019 01; 10(1): 106.
• 2019
  Mitchell PK, Mier-Y-Teran-Romero L, Biggerstaff BJ, Delorey MJ, Aubry M, Cao-Lormeau VM, Lozier MJ, Cauchemez S, Johansson MA, , Reassessing Serosurvey-Based Estimates of the Symptomatic Proportion of Zika Virus Infections., Am J Epidemiol 2019 01; 188(1): 206-213.
• 2018
  Cauchemez S, Bourhy H, , Improving the provision of rabies post-exposure prophylaxis., Lancet Infect Dis 2019 01; 19(1): 12-13.
• 2018
  Demeure CE, Derbise A, Guillas C, Gerke C, Cauchemez S, Carniel E, Pizarro-Cerdá J, , Humoral and cellular immune correlates of protection against bubonic plague by a live Yersinia pseudotuberculosis vaccine., Vaccine 2019 01; 37(1): 123-129.
• 2018
  Tarantola A, Ly S, Chan M, In S, Peng Y, Hing C, Taing CN, Phoen C, Ly S, Cauchemez S, Buchy P, Dussart P, Bourhy H, Mary JY, , Intradermal rabies post-exposure prophylaxis can be abridged with no measurable impact on clinical outcome in Cambodia, 2003-2014., Vaccine 2019 10; 37 Suppl 1(): A118-A127.
• 2018
  Kraemer MUG, Cummings DAT, Funk S, Reiner RC, Faria NR, Pybus OG, Cauchemez S, , Reconstruction and prediction of viral disease epidemics., Epidemiol Infect 2018 Nov; 147(): e34.
• 2018
  O'Reilly KM, Lowe R, Edmunds WJ, Mayaud P, Kucharski A, Eggo RM, Funk S, Bhatia D, Khan K, Kraemer MUG, Wilder-Smith A, Rodrigues LC, Brasil P, Massad E, Jaenisch T, Cauchemez S, Brady OJ, Yakob L, , Projecting the end of the Zika virus epidemic in Latin America: a modelling analysis., BMC Med 2018 10; 16(1): 180.
• 2018
  Winter AK, Wesolowski AP, Mensah KJ, Ramamonjiharisoa MB, Randriamanantena AH, Razafindratsimandresy R, Cauchemez S, Lessler J, Ferrari MJ, Metcalf CJE, Héraud JM, , Revealing Measles Outbreak Risk With a Nested Immunoglobulin G Serosurvey in Madagascar., Am J Epidemiol 2018 10; 187(10): 2219-2226.
• 2018
  Ihantamalala FA, Herbreteau V, Rakotoarimanana FMJ, Rakotondramanga JM, Cauchemez S, Rahoilijaona B, Pennober G, Buckee CO, Rogier C, Metcalf CJE, Wesolowski A, , Estimating sources and sinks of malaria parasites in Madagascar., Nat Commun 2018 09; 9(1): 3897.
• 2018
  Nikolay B, Cauchemez S, , Enterovirus outbreak dynamics., Science 2018 08; 361(6404): 755-756.
• 2018
  Faria NR, Kraemer MUG, Hill SC, Goes de Jesus J, Aguiar RS, Iani FCM, Xavier J, Quick J, du Plessis L, Dellicour S, Thézé J, Carvalho RDO, Baele G, Wu CH, Silveira PP, Arruda MB, Pereira MA, Pereira GC, Lourenço J, Obolski U, Abade L, Vasylyeva TI, Giovanetti M, Yi D, Weiss DJ, Wint GRW, Shearer FM, Funk S, Nikolay B, Fonseca V, Adelino TER, Oliveira MAA, Silva MVF, Sacchetto L, Figueiredo PO, Rezende IM, Mello EM, Said RFC, Santos DA, Ferraz ML, Brito MG, Santana LF, Menezes MT, Brindeiro RM, Tanuri A, Dos Santos FCP, Cunha MS, Nogueira JS, Rocco IM, da Costa AC, Komninakis SCV, Azevedo V, Chieppe AO, Araujo ESM, Mendonça MCL, Dos Santos CC, Dos Santos CD, Mares-Guia AM, Nogueira RMR, Sequeira PC, Abreu RG, Garcia MHO, Abreu AL, Okumoto O, Kroon EG, de Albuquerque CFC, Lewandowski K, Pullan ST, Carroll M, de Oliveira T, Sabino EC, Souza RP, Suchard MA, Lemey P, Trindade GS, Drumond BP, Filippis AMB, Loman NJ, Cauchemez S, Alcantara LCJ, Pybus OG, , Genomic and epidemiological monitoring of yellow fever virus transmission potential., Science 2018 08; 361(6405): 894-899.
• 2018
  Paireau J, Pelat C, Caserio-Schönemann C, Pontais I, Le Strat Y, Lévy-Bruhl D, Cauchemez S, , Mapping influenza activity in emergency departments in France using Bayesian model-based geostatistics., Influenza Other Respir Viruses 2018 11; 12(6): 772-779.
• 2018
  Succo T, Noël H, Nikolay B, Maquart M, Cochet A, Leparc-Goffart I, Catelinois O, Salje H, Pelat C, de Crouy-Chanel P, de Valk H, Cauchemez S, Rousseau C, , Dengue serosurvey after a 2-month long outbreak in Nîmes, France, 2015: was there more than met the eye?, Euro Surveill 2018 06; 23(23): .
• 2018
  Salje H, Cummings DAT, Rodriguez-Barraquer I, Katzelnick LC, Lessler J, Klungthong C, Thaisomboonsuk B, Nisalak A, Weg A, Ellison D, Macareo L, Yoon IK, Jarman R, Thomas S, Rothman AL, Endy T, Cauchemez S, , Reconstruction of antibody dynamics and infection histories to evaluate dengue risk., Nature 2018 05; 557(7707): 719-723.
• 2018
  Courtejoie N, Salje H, Durand B, Zanella G, Cauchemez S, , Using serological studies to reconstruct the history of bluetongue epidemic in French cattle under successive vaccination campaigns., Epidemics 2018 12; 25(): 54-60.
• 2018
  Ali ST, Wu P, Cauchemez S, He D, Fang VJ, Cowling BJ, Tian L, , Ambient ozone and influenza transmissibility in Hong Kong., Eur Respir J 2018 05; 51(5): .
• 2018
  Cortes MC, Cauchemez S, Lefrancq N, Luby SP, Jahangir Hossain M, Sazzad HMS, Rahman M, Daszak P, Salje H, Gurley ES, , Characterization of the Spatial and Temporal Distribution of Nipah Virus Spillover Events in Bangladesh, 2007-2013., J Infect Dis 2018 04; 217(9): 1390-1394.
• 2018
  Ihantamalala FA, Rakotoarimanana FMJ, Ramiadantsoa T, Rakotondramanga JM, Pennober G, Rakotomanana F, Cauchemez S, Metcalf CJE, Herbreteau V, Wesolowski A, , Spatial and temporal dynamics of malaria in Madagascar., Malar J 2018 Feb; 17(1): 58.
• 2018
  Yan J, Grantham M, Pantelic J, Bueno de Mesquita PJ, Albert B, Liu F, Ehrman S, Milton DK, , , Infectious virus in exhaled breath of symptomatic seasonal influenza cases from a college community., Proc Natl Acad Sci U S A 2018 01; 115(5): 1081-1086.
• 2017
  Andronico A, Dorléans F, Fergé JL, Salje H, Ghawché F, Signate A, Daudens-Vaysse E, Baudouin L, Dub T, Aubry M, Cao-Lormeau VM, Ledrans M, Noel H, Mallet HP, Fontanet A, Cabié A, Cauchemez S, , Real-Time Assessment of Health-Care Requirements During the Zika Virus Epidemic in Martinique., Am J Epidemiol 2017 Nov; 186(10): 1194-1203.
• 2017
  Flamand C, Fritzell C, Matheus S, Dueymes M, Carles G, Favre A, Enfissi A, Adde A, Demar M, Kazanji M, Cauchemez S, Rousset D, , The proportion of asymptomatic infections and spectrum of disease among pregnant women infected by Zika virus: systematic monitoring in French Guiana, 2016., Euro Surveill 2017 Nov; 22(44): .
• 2017
  Faria NR, Quick J, Claro IM, Thézé J, de Jesus JG, Giovanetti M, Kraemer MUG, Hill SC, Black A, da Costa AC, Franco LC, Silva SP, Wu CH, Raghwani J, Cauchemez S, du Plessis L, Verotti MP, de Oliveira WK, Carmo EH, Coelho GE, Santelli ACFS, Vinhal LC, Henriques CM, Simpson JT, Loose M, Andersen KG, Grubaugh ND, Somasekar S, Chiu CY, Muñoz-Medina JE, Gonzalez-Bonilla CR, Arias CF, Lewis-Ximenez LL, Baylis SA, Chieppe AO, Aguiar SF, Fernandes CA, Lemos PS, Nascimento BLS, Monteiro HAO, Siqueira IC, de Queiroz MG, de Souza TR, Bezerra JF, Lemos MR, Pereira GF, Loudal D, Moura LC, Dhalia R, França RF, Magalhães T, Marques ET, Jaenisch T, Wallau GL, de Lima MC, Nascimento V, de Cerqueira EM, de Lima MM, Mascarenhas DL, Neto JPM, Levin AS, Tozetto-Mendoza TR, Fonseca SN, Mendes-Correa MC, Milagres FP, Segurado A, Holmes EC, Rambaut A, Bedford T, Nunes MRT, Sabino EC, Alcantara LCJ, Loman NJ, Pybus OG, , Establishment and cryptic transmission of Zika virus in Brazil and the Americas., Nature 2017 06; 546(7658): 406-410.
• 2017
  Nikolay B, Salje H, Sturm-Ramirez K, Azziz-Baumgartner E, Homaira N, Ahmed M, Iuliano AD, Paul RC, Rahman M, Hossain MJ, Luby SP, Cauchemez S, Gurley ES, , Evaluating Hospital-Based Surveillance for Outbreak Detection in Bangladesh: Analysis of Healthcare Utilization Data., PLoS Med 2017 Jan; 14(1): e1002218.
• 2016
  Kraemer MUG, Faria NR, Reiner RC, Golding N, Nikolay B, Stasse S, Johansson MA, Salje H, Faye O, Wint GRW, Niedrig M, Shearer FM, Hill SC, Thompson RN, Bisanzio D, Taveira N, Nax HH, Pradelski BSR, Nsoesie EO, Murphy NR, Bogoch II, Khan K, Brownstein JS, Tatem AJ, de Oliveira T, Smith DL, Sall AA, Pybus OG, Hay SI, Cauchemez S, , Spread of yellow fever virus outbreak in Angola and the Democratic Republic of the Congo 2015-16: a modelling study., Lancet Infect Dis 2017 03; 17(3): 330-338.
• 2016
  Salje H, Lessler J, Paul KK, Azman AS, Rahman MW, Rahman M, Cummings D, Gurley ES, Cauchemez S, How social structures, space, and behaviors shape the spread of infectious diseases using chikungunya as a case study, Proc. Natl. Acad. Sci. U.S.A. 2016 11;113(47):13420-13425.
• 2016
  Cauchemez S, Nouvellet P, Cori A, Jombart T, Garske T, Clapham H, Moore S, Mills HL, Salje H, Collins C, Rodriquez-Barraquer I, Riley S, Truelove S, Algarni H, Alhakeem R, AlHarbi K, Turkistani A, Aguas RJ, Cummings DA, Van Kerkhove MD, Donnelly CA, Lessler J, Fraser C, Al-Barrak A, Ferguson NM, Unraveling the drivers of MERS-CoV transmission, Proc. Natl. Acad. Sci. U.S.A. 2016 08;113(32):9081-6.
• 2016
  Cauchemez S, Besnard M, Garel C, Fontanet A, Mallet HP, Could clinical symptoms be a predictor of complications in Zika virus infection? – Authors’ reply, Lancet 2016 Jul;388(10042):338-339.
• 2016
  Imai N, Dorigatti I, Cauchemez S, Ferguson NM, Estimating Dengue Transmission Intensity from Case-Notification Data from Multiple Countries, PLoS Negl Trop Dis 2016 07;10(7):e0004833.
• 2016
  Tsang TK, Fang VJ, Chan KH, Ip DK, Leung GM, Peiris JS, Cowling BJ, Cauchemez S, Individual Correlates of Infectivity of Influenza A Virus Infections in Households, PLoS ONE 2016;11(5):e0154418.
• 2016
  Bourhy H, Nakouné E, Hall M, Nouvellet P, Lepelletier A, Talbi C, Watier L, Holmes EC, Cauchemez S, Lemey P, Donnelly CA, Rambaut A, Revealing the Micro-scale Signature of Endemic Zoonotic Disease Transmission in an African Urban Setting, PLoS Pathog. 2016 Apr;12(4):e1005525.
• 2016
  Hem S, Ly S, Votsi I, Vogt F, Asgari N, Buchy P, Heng S, Picardeau M, Sok T, Ly S, Huy R, Guillard B, Cauchemez S, Tarantola A, Estimating the Burden of Leptospirosis among Febrile Subjects Aged below 20 Years in Kampong Cham Communities, Cambodia, 2007-2009, PLoS ONE 2016;11(4):e0151555.
• 2016
  Freeman G, Perera RA, Ngan E, Fang VJ, Cauchemez S, Ip DK, Peiris JS, Cowling BJ, Quantifying homologous and heterologous antibody titre rises after influenza virus infection, Epidemiol. Infect. 2016 08;144(11):2306-16.
• 2016
  Cauchemez S, Besnard M, Bompard P, Dub T, Guillemette-Artur P, Eyrolle-Guignot D, Salje H, Van Kerkhove MD, Abadie V, Garel C, Fontanet A, Mallet HP, Association between Zika virus and microcephaly in French Polynesia, 2013-15: a retrospective study, Lancet 2016 May;387(10033):2125-2132.
• 2016
  Cauchemez S, Besnard M, Bompard P, Dub T, Guillmette-Arthur P, Eyrolle-Guignot D, Salje H, Van Kerkhove MD, Abadie V, Garel C, Fontanet A, Mallet HP, Association between Zika virus and microcephaly in French Polynesia, 2013-2015: a retrospective study, The Lancet 2016; 387:2125-32..
• 2016
  Lessler J, Salje H, Van Kerkhove MD, Ferguson NM, Cauchemez S, Rodriquez-Barraquer I, Hakeem R, Jombart T, Aguas R, Al-Barrak A, Cummings DA, , Estimating the Severity and Subclinical Burden of Middle East Respiratory Syndrome Coronavirus Infection in the Kingdom of Saudi Arabia, Am. J. Epidemiol. 2016 Apr;183(7):657-63.
• 2016
  Fumanelli L, Ajelli M, Merler S, Ferguson NM, Cauchemez S, Model-Based Comprehensive Analysis of School Closure Policies for Mitigating Influenza Epidemics and Pandemics, PLoS Comput. Biol. 2016 Jan;12(1):e1004681.
• 2016
  Horwood PF, Andronico A, Tarantola A, Salje H, Duong V, Mey C, Ly S, Dussart P, Cauchemez S, Buchy P, Seroepidemiology of Human Enterovirus 71 Infection among Children, Cambodia, Emerging Infect. Dis. 2016 Jan;22(1):92-5.
• 2016
  Tsang TK, Fang VJ, Perera RA, Ip DK, Leung GM, Peiris JS, Cauchemez S, Cowling BJ, Interpreting Seroepidemiologic Studies of Influenza in a Context of Nonbracketing Sera, Epidemiology 2016 Jan;27(1):152-8.
• 2015
  Killingley B, Greatorex J, Digard P, Wise H, Garcia F, Varsani H, Cauchemez S, Enstone JE, Hayward A, Curran MD, Read RC, Lim WS, Nicholson KG, Nguyen-Van-Tam JS, The environmental deposition of influenza virus from patients infected with influenza A(H1N1)pdm09: Implications for infection prevention and control, J Infect Public Health 2016 May-Jun;9(3):278-88.
• 2015
  Faye O, Andronico A, Faye O, Salje H, Boëlle PY, Magassouba N, Bah EI, Koivogui L, Diallo B, Diallo AA, Keita S, Konde MK, Fowler R, Fall G, Cauchemez S, Sall AA, Use of Viremia to Evaluate the Baseline Case Fatality Ratio of Ebola Virus Disease and Inform Treatment Studies: A Retrospective Cohort Study, PLoS Med. 2015 Dec;12(12):e1001908.
• 2015
  Tsang TK, Lau LLH, Cauchemez S, Cowling BJ, Household Transmission of Influenza Virus, Trends Microbiol. 2016 Feb;24(2):123-133.
• 2015
  Salje H, Cauchemez S, Alera MT, Rodriguez-Barraquer I, Thaisomboonsuk B, Srikiatkhachorn A, Lago CB, Villa D, Klungthong C, Tac-An IA, Fernandez S, Velasco JM, Roque VG, Nisalak A, Macareo LR, Levy JW, Cummings D, Yoon IK, Reconstruction of 60 Years of Chikungunya Epidemiology in the Philippines Demonstrates Episodic and Focal Transmission, J. Infect. Dis. 2016 Feb;213(4):604-10.
• 2015
  Xu C, Chan KH, Tsang TK, Fang VJ, Fung RO, Ip DK, Cauchemez S, Leung GM, Peiris JS, Cowling BJ, Comparative Epidemiology of Influenza B Yamagata- and Victoria-Lineage Viruses in Households, Am. J. Epidemiol. 2015 Oct;182(8):705-13.
• 2015
  Iyengar P, von Mollendorf C, Tempia S, Moerdyk A, Valley-Omar Z, Hellferscee O, Martinson N, Chhagan M, McMorrow M, Gambhir M, Cauchemez S, Variava E, Masonoke K, Cohen AL, Cohen C, Case-ascertained study of household transmission of seasonal influenza – South Africa, 2013, J. Infect. 2015 Nov;71(5):578-86.
• 2015
  Gambhir M, Clark TA, Cauchemez S, Tartof SY, Swerdlow DL, Ferguson NM, A change in vaccine efficacy and duration of protection explains recent rises in pertussis incidence in the United States, PLoS Comput. Biol. 2015 Apr;11(4):e1004138.
• 2015
  Imai N, Dorigatti I, Cauchemez S, Ferguson NM, Estimating dengue transmission intensity from sero-prevalence surveys in multiple countries, PLoS Negl Trop Dis 2015 Apr;9(4):e0003719.
• 2015
  Tsang TK, Cowling BJ, Fang VJ, Chan KH, Ip DK, Leung GM, Peiris JS, Cauchemez S, Influenza A Virus Shedding and Infectivity in Households, J. Infect. Dis. 2015 Nov;212(9):1420-8.
• 2015
  Faye O, Boëlle PY, Heleze E, Faye O, Loucoubar C, Magassouba N, Soropogui B, Keita S, Gakou T, Bah el HI, Koivogui L, Sall AA, Cauchemez S, Chains of transmission and control of Ebola virus disease in Conakry, Guinea, in 2014: an observational study, Lancet Infect Dis 2015 Mar;15(3):320-6.
• 2014
  Tong SY, Holden MT, Nickerson EK, Cooper BS, Köser CU, Cori A, Jombart T, Cauchemez S, Fraser C, Wuthiekanun V, Thaipadungpanit J, Hongsuwan M, Day NP, Limmathurotsakul D, Parkhill J, Peacock SJ, Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting, Genome Res. 2015 Jan;25(1):111-8.
• 2014
  Lessler J, Rodriguez-Barraquer I, Cummings DA, Garske T, Van Kerkhove M, Mills H, Truelove S, Hakeem R, Albarrak A, Ferguson NM, , , Estimating Potential Incidence of MERS-CoV Associated with Hajj Pilgrims to Saudi Arabia, 2014, PLoS Curr 2014 Nov;6.
• 2014
  Mansiaux Y, Salez N, Lapidus N, Setbon M, Andreoletti L, Leruez-Ville M, Cauchemez S, Gougeon ML, Vély F, Schwarzinger M, Abel L, Delabre RM, Flahault A, de Lamballerie X, Carrat F, Causal analysis of H1N1pdm09 influenza infection risk in a household cohort, J Epidemiol Community Health 2015 Mar;69(3):272-7.
• 2014
  Pelat C, Ferguson NM, White PJ, Reed C, Finelli L, Cauchemez S, Fraser C, Optimizing the precision of case fatality ratio estimates under the surveillance pyramid approach, Am. J. Epidemiol. 2014 Nov;180(10):1036-46.
• 2014
  Biggerstaff M, Cauchemez S, Reed C, Gambhir M, Finelli L, Estimates of the reproduction number for seasonal, pandemic, and zoonotic influenza: a systematic review of the literature, BMC Infect. Dis. 2014 Sep;14:480.
• 2014
  Cauchemez S, Ferguson NM, Fox A, Mai le Q, Thanh le T, Thai PQ, Thoang DD, Duong TN, Minh Hoa le N, Tran Hien N, Horby P, Determinants of influenza transmission in South East Asia: insights from a household cohort study in Vietnam, PLoS Pathog. 2014 Aug;10(8):e1004310.
• 2014
  Cauchemez S, Ledrans M, Poletto C, Quenel P, de Valk H, Colizza V, Boëlle PY, Local and regional spread of chikungunya fever in the Americas, Euro Surveill. 2014 Jul;19(28):20854.
• 2014
  Churcher TS, Cohen JM, Novotny J, Ntshalintshali N, Kunene S, Cauchemez S, Public health. Measuring the path toward malaria elimination, Science 2014 Jun;344(6189):1230-2.
• 2014
  Jombart T, Aanensen DM, Baguelin M, Birrell P, Cauchemez S, Camacho A, Colijn C, Collins C, Cori A, Didelot X, Fraser C, Frost S, Hens N, Hugues J, Höhle M, Opatowski L, Rambaut A, Ratmann O, Soubeyrand S, Suchard MA, Wallinga J, Ypma R, Ferguson N., OutbreakTools: a new platform for disease outbreak analysis using the R software, Epidemics. 2014 Jun;7:28-34.
• 2014
  Jombart T, Aanensen DM, Baguelin M, Birrell P, Cauchemez S, Camacho A, Colijn C, Collins C, Cori A, Didelot X, Fraser C, Frost S, Hens N, Hugues J, Höhle M, Opatowski L, Rambaut A, Ratmann O, Soubeyrand S, Suchard MA, Wallinga J, Ypma R, Ferguson N, OutbreakTools: a new platform for disease outbreak analysis using the R software, Epidemics 2014 Jun;7:28-34.
• 2014
  Cauchemez S, Van Kerkhove MD, Archer BN, Cetron M, Cowling BJ, Grove P, Hunt D, Kojouharova M, Kon P, Ungchusak K, Oshitani H, Pugliese A, Rizzo C, Saour G, Sunagawa T, Uzicanin A, Wachtel C, Weisfuse I, Yu H, Nicoll A, School closures during the 2009 influenza pandemic: national and local experiences, BMC Infect. Dis. 2014 Apr;14:207.
• 2014
  Tsang TK, Cauchemez S, Perera RA, Freeman G, Fang VJ, Ip DK, Leung GM, Malik Peiris JS, Cowling BJ, Association between antibody titers and protection against influenza virus infection within households, J. Infect. Dis. 2014 Sep;210(5):684-92.
• 2014
  Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C, Ferguson N, Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data, PLoS Comput. Biol. 2014 Jan;10(1):e1003457.
• 2013
  Cauchemez S, Fraser C, Van Kerkhove MD, Donnelly CA, Riley S, Rambaut A, Enouf V, van der Werf S, Ferguson NM, Middle East respiratory syndrome coronavirus: quantification of the extent of the epidemic, surveillance biases, and transmissibility, Lancet Infect Dis 2014 Jan;14(1):50-56.
• 2013
  Cori A, Ferguson NM, Fraser C, Cauchemez S, A new framework and software to estimate time-varying reproduction numbers during epidemics, Am. J. Epidemiol. 2013 Nov;178(9):1505-12.
• 2013
  Cauchemez S, Epperson S, Biggerstaff M, Swerdlow D, Finelli L, Ferguson NM, Using routine surveillance data to estimate the epidemic potential of emerging zoonoses: application to the emergence of US swine origin influenza A H3N2v virus, PLoS Med. 2013;10(3):e1001399.
• 2012
  Cauchemez S, Horby P, Fox A, Mai le Q, Thanh le T, Thai PQ, Hoa le NM, Hien NT, Ferguson NM, Influenza infection rates, measurement errors and the interpretation of paired serology, PLoS Pathog. 2012;8(12):e1003061.
• 2011
  Opatowski L, Fraser C, Griffin J, de Silva E, Van Kerkhove MD, Lyons EJ, Cauchemez S, Ferguson NM., Transmission characteristics of the 2009 H1N1 influenza pandemic: comparison of 8 Southern hemisphere countries., PLoS Pathog. 2011 Sep;7(9):e1002225.
• 2011
  Cauchemez S, Bhattarai A, Marchbanks TL, Fagan RP, Ostroff S, Ferguson NM, Swerdlow D, , Role of social networks in shaping disease transmission during a community outbreak of 2009 H1N1 pandemic influenza, Proc. Natl. Acad. Sci. U.S.A. 2011 Feb;108(7):2825-30.
• 2009
  Cauchemez S, Donnelly CA, Reed C, Ghani AC, Fraser C, Kent CK, Finelli L, Ferguson NM, Household transmission of 2009 pandemic influenza A (H1N1) virus in the United States, N. Engl. J. Med. 2009 Dec;361(27):2619-27.
• 2009
  Fraser C, Donnelly CA, Cauchemez S, Hanage WP, Van Kerkhove MD, Hollingsworth TD, Griffin J, Baggaley RF, Jenkins HE, Lyons EJ, Jombart T, Hinsley WR, Grassly NC, Balloux F, Ghani AC, Ferguson NM, Rambaut A, Pybus OG, Lopez-Gatell H, Alpuche-Aranda CM, Chapela IB, Zavala EP, Guevara DM, Checchi F, Garcia E, Hugonnet S, Roth C, , Pandemic potential of a strain of influenza A (H1N1): early findings, Science 2009 Jun;324(5934):1557-61.
• 2008
  Cauchemez S, Valleron AJ, Boëlle PY, Flahault A, Ferguson NM, Estimating the impact of school closure on influenza transmission from Sentinel data, Nature 2008 Apr;452(7188):750-4.