• 2021
  Salje H, Wesolowski A, Brown TS, Kiang MV, Berry IM, Lefrancq N, Fernandez S, Jarman RG, Ruchusatsawat K, Iamsirithaworn S, Vandepitte WP, Suntarattiwong P, Read JM, Klungthong C, Thaisomboonsuk B, Engø-Monsen K, Buckee C, Cauchemez S, Cummings DAT, , Reconstructing unseen transmission events to infer dengue dynamics from viral sequences., Nat Commun 2021 03; 12(1): 1810.
• 2021
  Andronico A, Tran Kiem C, Paireau J, Succo T, Bosetti P, Lefrancq N, Nacher M, Djossou F, Sanna A, Flamand C, Salje H, Rousseau C, Cauchemez S, , Evaluating the impact of curfews and other measures on SARS-CoV-2 transmission in French Guiana., Nat Commun 2021 03; 12(1): 1634.
• 2021
  Bosetti P, Kiem CT, Yazdanpanah Y, Fontanet A, Lina B, Colizza V, Cauchemez S, , Impact of mass testing during an epidemic rebound of SARS-CoV-2: a modelling study using the example of France., Euro Surveill 2021 01; 26(1): .
• 2020
  O'Driscoll M, Dos Santos GR, Wang L, Cummings DAT, Azman AS, Paireau J, Fontanet A, Cauchemez S, Salje H, , Age-specific mortality and immunity patterns of SARS-CoV-2., Nature 2020 Nov; (): .
• 2020
  Cauchemez S, Kiem CT, Paireau J, Rolland P, Fontanet A, , Lockdown impact on COVID-19 epidemics in regions across metropolitan France., Lancet 2020 Sep; (): .
• 2020
  Fontanet A, Cauchemez S, , COVID-19 herd immunity: where are we?, Nat. Rev. Immunol. 2020 Sep; (): .
• 2020
  Kraemer MUG, Pigott DM, Hill SC, Vanderslott S, Reiner RC, Stasse S, Brownstein JS, Gutierrez B, Dennig F, Hay SI, Wint GRW, Pybus OG, Castro MC, Vinck P, Pham PN, Nilles EJ, Cauchemez S, , Dynamics of conflict during the Ebola outbreak in the Democratic Republic of the Congo 2018-2019., BMC Med 2020 Apr; 18(1): 113.
• 2019
  Nikolay B, Salje H, Hossain MJ, Khan AKMD, Sazzad HMS, Rahman M, Daszak P, Ströher U, Pulliam JRC, Kilpatrick AM, Nichol ST, Klena JD, Sultana S, Afroj S, Luby SP, Cauchemez S, Gurley ES, Transmission of Nipah Virus – 14 Years of Investigations in Bangladesh, N. Engl. J. Med. 2019 May;380(19):1804-1814.
• 2019
  Kraemer MUG, Reiner RC, Brady OJ, Messina JP, Gilbert M, Pigott DM, Yi D, Johnson K, Earl L, Marczak LB, Shirude S, Davis Weaver N, Bisanzio D, Perkins TA, Lai S, Lu X, Jones P, Coelho GE, Carvalho RG, Van Bortel W, Marsboom C, Hendrickx G, Schaffner F, Moore CG, Nax HH, Bengtsson L, Wetter E, Tatem AJ, Brownstein JS, Smith DL, Lambrechts L, Cauchemez S, Linard C, Faria NR, Pybus OG, Scott TW, Liu Q, Yu H, Wint GRW, Hay SI, Golding N, Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus, Nat Microbiol 2019 Mar;.
• 2019
  Cauchemez S, Hoze N, Cousien A, Nikolay B, Ten Bosch Q, How Modelling Can Enhance the Analysis of Imperfect Epidemic Data, Trends Parasitol. 2019 Feb;.
• 2019
  Tsang TK, Fang VJ, Ip DKM, Perera RAPM, So HC, Leung GM, Peiris JSM, Cowling BJ, Cauchemez S, Indirect protection from vaccinating children against influenza in households, Nat Commun 2019 01;10(1):106.
• 2019
  Mitchell PK, Mier-Y-Teran-Romero L, Biggerstaff BJ, Delorey MJ, Aubry M, Cao-Lormeau VM, Lozier MJ, Cauchemez S, Johansson MA, Reassessing Serosurvey-Based Estimates of the Symptomatic Proportion of Zika Virus Infections, Am. J. Epidemiol. 2019 Jan;188(1):206-213.
• 2018
  Cauchemez S, Bourhy H, Improving the provision of rabies post-exposure prophylaxis, Lancet Infect Dis 2019 Jan;19(1):12-13.
• 2018
  Demeure CE, Derbise A, Guillas C, Gerke C, Cauchemez S, Carniel E, Pizarro-Cerdá J, Humoral and cellular immune correlates of protection against bubonic plague by a live Yersinia pseudotuberculosis vaccine, Vaccine 2018 Nov;.
• 2018
  Tarantola A, Ly S, Chan M, In S, Peng Y, Hing C, Taing CN, Phoen C, Ly S, Cauchemez S, Buchy P, Dussart P, Bourhy H, Mary JY, Intradermal rabies post-exposure prophylaxis can be abridged with no measurable impact on clinical outcome in Cambodia, 2003-2014, Vaccine 2019 10;37 Suppl 1:A118-A127.
• 2018
  Kraemer MUG, Cummings DAT, Funk S, Reiner RC, Faria NR, Pybus OG, Cauchemez S, Reconstruction and prediction of viral disease epidemics, Epidemiol. Infect. 2018 Nov;:1-7.
• 2018
  O'Reilly KM, Lowe R, Edmunds WJ, Mayaud P, Kucharski A, Eggo RM, Funk S, Bhatia D, Khan K, Kraemer MUG, Wilder-Smith A, Rodrigues LC, Brasil P, Massad E, Jaenisch T, Cauchemez S, Brady OJ, Yakob L, Projecting the end of the Zika virus epidemic in Latin America: a modelling analysis, BMC Med 2018 10;16(1):180.
• 2018
  Winter AK, Wesolowski AP, Mensah KJ, Ramamonjiharisoa MB, Randriamanantena AH, Razafindratsimandresy R, Cauchemez S, Lessler J, Ferrari MJ, Metcalf CJE, Héraud JM, Revealing Measles Outbreak Risk With a Nested Immunoglobulin G Serosurvey in Madagascar, Am. J. Epidemiol. 2018 Oct;187(10):2219-2226.
• 2018
  Ihantamalala FA, Herbreteau V, Rakotoarimanana FMJ, Rakotondramanga JM, Cauchemez S, Rahoilijaona B, Pennober G, Buckee CO, Rogier C, Metcalf CJE, Wesolowski A, Estimating sources and sinks of malaria parasites in Madagascar, Nat Commun 2018 09;9(1):3897.
• 2018
  Nikolay B, Cauchemez S, Enterovirus outbreak dynamics, Science 2018 08;361(6404):755-756.
• 2018
  Faria NR, Kraemer MUG, Hill SC, Goes de Jesus J, Aguiar RS, Iani FCM, Xavier J, Quick J, du Plessis L, Dellicour S, Thézé J, Carvalho RDO, Baele G, Wu CH, Silveira PP, Arruda MB, Pereira MA, Pereira GC, Lourenço J, Obolski U, Abade L, Vasylyeva TI, Giovanetti M, Yi D, Weiss DJ, Wint GRW, Shearer FM, Funk S, Nikolay B, Fonseca V, Adelino TER, Oliveira MAA, Silva MVF, Sacchetto L, Figueiredo PO, Rezende IM, Mello EM, Said RFC, Santos DA, Ferraz ML, Brito MG, Santana LF, Menezes MT, Brindeiro RM, Tanuri A, Dos Santos FCP, Cunha MS, Nogueira JS, Rocco IM, da Costa AC, Komninakis SCV, Azevedo V, Chieppe AO, Araujo ESM, Mendonça MCL, Dos Santos CC, Dos Santos CD, Mares-Guia AM, Nogueira RMR, Sequeira PC, Abreu RG, Garcia MHO, Abreu AL, Okumoto O, Kroon EG, de Albuquerque CFC, Lewandowski K, Pullan ST, Carroll M, de Oliveira T, Sabino EC, Souza RP, Suchard MA, Lemey P, Trindade GS, Drumond BP, Filippis AMB, Loman NJ, Cauchemez S, Alcantara LCJ, Pybus OG, Genomic and epidemiological monitoring of yellow fever virus transmission potential, Science 2018 08;361(6405):894-899.
• 2018
  Paireau J, Pelat C, Caserio-Schönemann C, Pontais I, Le Strat Y, Lévy-Bruhl D, Cauchemez S, Mapping influenza activity in emergency departments in France using Bayesian model-based geostatistics, Influenza Other Respir Viruses 2018 11;12(6):772-779.
• 2018
  Ali ST, Wu P, Cauchemez S, He D, Fang VJ, Cowling BJ, Tian L, Ambient ozone and influenza transmissibility in Hong Kong, Eur. Respir. J. 2018 05;51(5).
• 2018
  Cortes MC, Cauchemez S, Lefrancq N, Luby SP, Jahangir Hossain M, Sazzad HMS, Rahman M, Daszak P, Salje H, Gurley ES, Characterization of the Spatial and Temporal Distribution of Nipah Virus Spillover Events in Bangladesh, 2007-2013, J. Infect. Dis. 2018 Apr;217(9):1390-1394.
• 2018
  Ihantamalala FA, Rakotoarimanana FMJ, Ramiadantsoa T, Rakotondramanga JM, Pennober G, Rakotomanana F, Cauchemez S, Metcalf CJE, Herbreteau V, Wesolowski A, Spatial and temporal dynamics of malaria in Madagascar, Malar. J. 2018 Feb;17(1):58.
• 2017
  Andronico A, Dorléans F, Fergé JL, Salje H, Ghawché F, Signate A, Daudens-Vaysse E, Baudouin L, Dub T, Aubry M, Cao-Lormeau VM, Ledrans M, Noel H, Mallet HP, Fontanet A, Cabié A, Cauchemez S, Real-Time Assessment of Health-Care Requirements During the Zika Virus Epidemic in Martinique, Am. J. Epidemiol. 2017 Nov;186(10):1194-1203.
• 2017
  Flamand C, Fritzell C, Matheus S, Dueymes M, Carles G, Favre A, Enfissi A, Adde A, Demar M, Kazanji M, Cauchemez S, Rousset D, The proportion of asymptomatic infections and spectrum of disease among pregnant women infected by Zika virus: systematic monitoring in French Guiana, 2016, Euro Surveill. 2017 Nov;22(44).
• 2017
  Faria NR, Quick J, Claro IM, Thézé J, de Jesus JG, Giovanetti M, Kraemer MUG, Hill SC, Black A, da Costa AC, Franco LC, Silva SP, Wu CH, Raghwani J, Cauchemez S, du Plessis L, Verotti MP, de Oliveira WK, Carmo EH, Coelho GE, Santelli ACFS, Vinhal LC, Henriques CM, Simpson JT, Loose M, Andersen KG, Grubaugh ND, Somasekar S, Chiu CY, Muñoz-Medina JE, Gonzalez-Bonilla CR, Arias CF, Lewis-Ximenez LL, Baylis SA, Chieppe AO, Aguiar SF, Fernandes CA, Lemos PS, Nascimento BLS, Monteiro HAO, Siqueira IC, de Queiroz MG, de Souza TR, Bezerra JF, Lemos MR, Pereira GF, Loudal D, Moura LC, Dhalia R, França RF, Magalhães T, Marques ET, Jaenisch T, Wallau GL, de Lima MC, Nascimento V, de Cerqueira EM, de Lima MM, Mascarenhas DL, Neto JPM, Levin AS, Tozetto-Mendoza TR, Fonseca SN, Mendes-Correa MC, Milagres FP, Segurado A, Holmes EC, Rambaut A, Bedford T, Nunes MRT, Sabino EC, Alcantara LCJ, Loman NJ, Pybus OG, Establishment and cryptic transmission of Zika virus in Brazil and the Americas, Nature 2017 06;546(7658):406-410.
• 2017
  Nikolay B, Salje H, Sturm-Ramirez K, Azziz-Baumgartner E, Homaira N, Ahmed M, Iuliano AD, Paul RC, Rahman M, Hossain MJ, Luby SP, Cauchemez S, Gurley ES, Evaluating Hospital-Based Surveillance for Outbreak Detection in Bangladesh: Analysis of Healthcare Utilization Data, PLoS Med. 2017 Jan;14(1):e1002218.
• 2016
  Kraemer MUG, Faria NR, Reiner RC, Golding N, Nikolay B, Stasse S, Johansson MA, Salje H, Faye O, Wint GRW, Niedrig M, Shearer FM, Hill SC, Thompson RN, Bisanzio D, Taveira N, Nax HH, Pradelski BSR, Nsoesie EO, Murphy NR, Bogoch II, Khan K, Brownstein JS, Tatem AJ, de Oliveira T, Smith DL, Sall AA, Pybus OG, Hay SI, Cauchemez S, Spread of yellow fever virus outbreak in Angola and the Democratic Republic of the Congo 2015-16: a modelling study, Lancet Infect Dis 2017 03;17(3):330-338.
• 2016
  Salje H, Lessler J, Paul KK, Azman AS, Rahman MW, Rahman M, Cummings D, Gurley ES, Cauchemez S, How social structures, space, and behaviors shape the spread of infectious diseases using chikungunya as a case study, Proc. Natl. Acad. Sci. U.S.A. 2016 11;113(47):13420-13425.
• 2016
  Cauchemez S, Nouvellet P, Cori A, Jombart T, Garske T, Clapham H, Moore S, Mills HL, Salje H, Collins C, Rodriquez-Barraquer I, Riley S, Truelove S, Algarni H, Alhakeem R, AlHarbi K, Turkistani A, Aguas RJ, Cummings DA, Van Kerkhove MD, Donnelly CA, Lessler J, Fraser C, Al-Barrak A, Ferguson NM, Unraveling the drivers of MERS-CoV transmission, Proc. Natl. Acad. Sci. U.S.A. 2016 08;113(32):9081-6.
• 2016
  Cauchemez S, Besnard M, Garel C, Fontanet A, Mallet HP, Could clinical symptoms be a predictor of complications in Zika virus infection? – Authors’ reply, Lancet 2016 Jul;388(10042):338-339.
• 2016
  Imai N, Dorigatti I, Cauchemez S, Ferguson NM, Estimating Dengue Transmission Intensity from Case-Notification Data from Multiple Countries, PLoS Negl Trop Dis 2016 07;10(7):e0004833.
• 2016
  Tsang TK, Fang VJ, Chan KH, Ip DK, Leung GM, Peiris JS, Cowling BJ, Cauchemez S, Individual Correlates of Infectivity of Influenza A Virus Infections in Households, PLoS ONE 2016;11(5):e0154418.
• 2016
  Bourhy H, Nakouné E, Hall M, Nouvellet P, Lepelletier A, Talbi C, Watier L, Holmes EC, Cauchemez S, Lemey P, Donnelly CA, Rambaut A, Revealing the Micro-scale Signature of Endemic Zoonotic Disease Transmission in an African Urban Setting, PLoS Pathog. 2016 Apr;12(4):e1005525.
• 2016
  Hem S, Ly S, Votsi I, Vogt F, Asgari N, Buchy P, Heng S, Picardeau M, Sok T, Ly S, Huy R, Guillard B, Cauchemez S, Tarantola A, Estimating the Burden of Leptospirosis among Febrile Subjects Aged below 20 Years in Kampong Cham Communities, Cambodia, 2007-2009, PLoS ONE 2016;11(4):e0151555.
• 2016
  Freeman G, Perera RA, Ngan E, Fang VJ, Cauchemez S, Ip DK, Peiris JS, Cowling BJ, Quantifying homologous and heterologous antibody titre rises after influenza virus infection, Epidemiol. Infect. 2016 08;144(11):2306-16.
• 2016
  Cauchemez S, Besnard M, Bompard P, Dub T, Guillemette-Artur P, Eyrolle-Guignot D, Salje H, Van Kerkhove MD, Abadie V, Garel C, Fontanet A, Mallet HP, Association between Zika virus and microcephaly in French Polynesia, 2013-15: a retrospective study, Lancet 2016 May;387(10033):2125-2132.
• 2016
  Cauchemez S, Besnard M, Bompard P, Dub T, Guillmette-Arthur P, Eyrolle-Guignot D, Salje H, Van Kerkhove MD, Abadie V, Garel C, Fontanet A, Mallet HP, Association between Zika virus and microcephaly in French Polynesia, 2013-2015: a retrospective study, The Lancet 2016; 387:2125-32..
• 2016
  Lessler J, Salje H, Van Kerkhove MD, Ferguson NM, Cauchemez S, Rodriquez-Barraquer I, Hakeem R, Jombart T, Aguas R, Al-Barrak A, Cummings DA, , Estimating the Severity and Subclinical Burden of Middle East Respiratory Syndrome Coronavirus Infection in the Kingdom of Saudi Arabia, Am. J. Epidemiol. 2016 Apr;183(7):657-63.
• 2016
  Fumanelli L, Ajelli M, Merler S, Ferguson NM, Cauchemez S, Model-Based Comprehensive Analysis of School Closure Policies for Mitigating Influenza Epidemics and Pandemics, PLoS Comput. Biol. 2016 Jan;12(1):e1004681.
• 2016
  Horwood PF, Andronico A, Tarantola A, Salje H, Duong V, Mey C, Ly S, Dussart P, Cauchemez S, Buchy P, Seroepidemiology of Human Enterovirus 71 Infection among Children, Cambodia, Emerging Infect. Dis. 2016 Jan;22(1):92-5.
• 2016
  Tsang TK, Fang VJ, Perera RA, Ip DK, Leung GM, Peiris JS, Cauchemez S, Cowling BJ, Interpreting Seroepidemiologic Studies of Influenza in a Context of Nonbracketing Sera, Epidemiology 2016 Jan;27(1):152-8.
• 2015
  Killingley B, Greatorex J, Digard P, Wise H, Garcia F, Varsani H, Cauchemez S, Enstone JE, Hayward A, Curran MD, Read RC, Lim WS, Nicholson KG, Nguyen-Van-Tam JS, The environmental deposition of influenza virus from patients infected with influenza A(H1N1)pdm09: Implications for infection prevention and control, J Infect Public Health 2016 May-Jun;9(3):278-88.
• 2015
  Faye O, Andronico A, Faye O, Salje H, Boëlle PY, Magassouba N, Bah EI, Koivogui L, Diallo B, Diallo AA, Keita S, Konde MK, Fowler R, Fall G, Cauchemez S, Sall AA, Use of Viremia to Evaluate the Baseline Case Fatality Ratio of Ebola Virus Disease and Inform Treatment Studies: A Retrospective Cohort Study, PLoS Med. 2015 Dec;12(12):e1001908.
• 2015
  Tsang TK, Lau LLH, Cauchemez S, Cowling BJ, Household Transmission of Influenza Virus, Trends Microbiol. 2016 Feb;24(2):123-133.
• 2015
  Salje H, Cauchemez S, Alera MT, Rodriguez-Barraquer I, Thaisomboonsuk B, Srikiatkhachorn A, Lago CB, Villa D, Klungthong C, Tac-An IA, Fernandez S, Velasco JM, Roque VG, Nisalak A, Macareo LR, Levy JW, Cummings D, Yoon IK, Reconstruction of 60 Years of Chikungunya Epidemiology in the Philippines Demonstrates Episodic and Focal Transmission, J. Infect. Dis. 2016 Feb;213(4):604-10.
• 2015
  Xu C, Chan KH, Tsang TK, Fang VJ, Fung RO, Ip DK, Cauchemez S, Leung GM, Peiris JS, Cowling BJ, Comparative Epidemiology of Influenza B Yamagata- and Victoria-Lineage Viruses in Households, Am. J. Epidemiol. 2015 Oct;182(8):705-13.
• 2015
  Iyengar P, von Mollendorf C, Tempia S, Moerdyk A, Valley-Omar Z, Hellferscee O, Martinson N, Chhagan M, McMorrow M, Gambhir M, Cauchemez S, Variava E, Masonoke K, Cohen AL, Cohen C, Case-ascertained study of household transmission of seasonal influenza – South Africa, 2013, J. Infect. 2015 Nov;71(5):578-86.
• 2015
  Gambhir M, Clark TA, Cauchemez S, Tartof SY, Swerdlow DL, Ferguson NM, A change in vaccine efficacy and duration of protection explains recent rises in pertussis incidence in the United States, PLoS Comput. Biol. 2015 Apr;11(4):e1004138.
• 2015
  Imai N, Dorigatti I, Cauchemez S, Ferguson NM, Estimating dengue transmission intensity from sero-prevalence surveys in multiple countries, PLoS Negl Trop Dis 2015 Apr;9(4):e0003719.
• 2015
  Tsang TK, Cowling BJ, Fang VJ, Chan KH, Ip DK, Leung GM, Peiris JS, Cauchemez S, Influenza A Virus Shedding and Infectivity in Households, J. Infect. Dis. 2015 Nov;212(9):1420-8.
• 2015
  Faye O, Boëlle PY, Heleze E, Faye O, Loucoubar C, Magassouba N, Soropogui B, Keita S, Gakou T, Bah el HI, Koivogui L, Sall AA, Cauchemez S, Chains of transmission and control of Ebola virus disease in Conakry, Guinea, in 2014: an observational study, Lancet Infect Dis 2015 Mar;15(3):320-6.
• 2014
  Tong SY, Holden MT, Nickerson EK, Cooper BS, Köser CU, Cori A, Jombart T, Cauchemez S, Fraser C, Wuthiekanun V, Thaipadungpanit J, Hongsuwan M, Day NP, Limmathurotsakul D, Parkhill J, Peacock SJ, Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting, Genome Res. 2015 Jan;25(1):111-8.
• 2014
  Lessler J, Rodriguez-Barraquer I, Cummings DA, Garske T, Van Kerkhove M, Mills H, Truelove S, Hakeem R, Albarrak A, Ferguson NM, , , Estimating Potential Incidence of MERS-CoV Associated with Hajj Pilgrims to Saudi Arabia, 2014, PLoS Curr 2014 Nov;6.
• 2014
  Mansiaux Y, Salez N, Lapidus N, Setbon M, Andreoletti L, Leruez-Ville M, Cauchemez S, Gougeon ML, Vély F, Schwarzinger M, Abel L, Delabre RM, Flahault A, de Lamballerie X, Carrat F, Causal analysis of H1N1pdm09 influenza infection risk in a household cohort, J Epidemiol Community Health 2015 Mar;69(3):272-7.
• 2014
  Pelat C, Ferguson NM, White PJ, Reed C, Finelli L, Cauchemez S, Fraser C, Optimizing the precision of case fatality ratio estimates under the surveillance pyramid approach, Am. J. Epidemiol. 2014 Nov;180(10):1036-46.
• 2014
  Biggerstaff M, Cauchemez S, Reed C, Gambhir M, Finelli L, Estimates of the reproduction number for seasonal, pandemic, and zoonotic influenza: a systematic review of the literature, BMC Infect. Dis. 2014 Sep;14:480.
• 2014
  Cauchemez S, Ferguson NM, Fox A, Mai le Q, Thanh le T, Thai PQ, Thoang DD, Duong TN, Minh Hoa le N, Tran Hien N, Horby P, Determinants of influenza transmission in South East Asia: insights from a household cohort study in Vietnam, PLoS Pathog. 2014 Aug;10(8):e1004310.
• 2014
  Cauchemez S, Ledrans M, Poletto C, Quenel P, de Valk H, Colizza V, Boëlle PY, Local and regional spread of chikungunya fever in the Americas, Euro Surveill. 2014 Jul;19(28):20854.
• 2014
  Churcher TS, Cohen JM, Novotny J, Ntshalintshali N, Kunene S, Cauchemez S, Public health. Measuring the path toward malaria elimination, Science 2014 Jun;344(6189):1230-2.
• 2014
  Jombart T, Aanensen DM, Baguelin M, Birrell P, Cauchemez S, Camacho A, Colijn C, Collins C, Cori A, Didelot X, Fraser C, Frost S, Hens N, Hugues J, Höhle M, Opatowski L, Rambaut A, Ratmann O, Soubeyrand S, Suchard MA, Wallinga J, Ypma R, Ferguson N., OutbreakTools: a new platform for disease outbreak analysis using the R software, Epidemics. 2014 Jun;7:28-34.
• 2014
  Jombart T, Aanensen DM, Baguelin M, Birrell P, Cauchemez S, Camacho A, Colijn C, Collins C, Cori A, Didelot X, Fraser C, Frost S, Hens N, Hugues J, Höhle M, Opatowski L, Rambaut A, Ratmann O, Soubeyrand S, Suchard MA, Wallinga J, Ypma R, Ferguson N, OutbreakTools: a new platform for disease outbreak analysis using the R software, Epidemics 2014 Jun;7:28-34.
• 2014
  Cauchemez S, Van Kerkhove MD, Archer BN, Cetron M, Cowling BJ, Grove P, Hunt D, Kojouharova M, Kon P, Ungchusak K, Oshitani H, Pugliese A, Rizzo C, Saour G, Sunagawa T, Uzicanin A, Wachtel C, Weisfuse I, Yu H, Nicoll A, School closures during the 2009 influenza pandemic: national and local experiences, BMC Infect. Dis. 2014 Apr;14:207.
• 2014
  Tsang TK, Cauchemez S, Perera RA, Freeman G, Fang VJ, Ip DK, Leung GM, Malik Peiris JS, Cowling BJ, Association between antibody titers and protection against influenza virus infection within households, J. Infect. Dis. 2014 Sep;210(5):684-92.
• 2014
  Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C, Ferguson N, Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data, PLoS Comput. Biol. 2014 Jan;10(1):e1003457.
• 2013
  Cauchemez S, Fraser C, Van Kerkhove MD, Donnelly CA, Riley S, Rambaut A, Enouf V, van der Werf S, Ferguson NM, Middle East respiratory syndrome coronavirus: quantification of the extent of the epidemic, surveillance biases, and transmissibility, Lancet Infect Dis 2014 Jan;14(1):50-56.
• 2013
  Cori A, Ferguson NM, Fraser C, Cauchemez S, A new framework and software to estimate time-varying reproduction numbers during epidemics, Am. J. Epidemiol. 2013 Nov;178(9):1505-12.
• 2013
  Cauchemez S, Epperson S, Biggerstaff M, Swerdlow D, Finelli L, Ferguson NM, Using routine surveillance data to estimate the epidemic potential of emerging zoonoses: application to the emergence of US swine origin influenza A H3N2v virus, PLoS Med. 2013;10(3):e1001399.
• 2012
  Cauchemez S, Horby P, Fox A, Mai le Q, Thanh le T, Thai PQ, Hoa le NM, Hien NT, Ferguson NM, Influenza infection rates, measurement errors and the interpretation of paired serology, PLoS Pathog. 2012;8(12):e1003061.
• 2011
  Opatowski L, Fraser C, Griffin J, de Silva E, Van Kerkhove MD, Lyons EJ, Cauchemez S, Ferguson NM., Transmission characteristics of the 2009 H1N1 influenza pandemic: comparison of 8 Southern hemisphere countries., PLoS Pathog. 2011 Sep;7(9):e1002225.
• 2011
  Cauchemez S, Bhattarai A, Marchbanks TL, Fagan RP, Ostroff S, Ferguson NM, Swerdlow D, , Role of social networks in shaping disease transmission during a community outbreak of 2009 H1N1 pandemic influenza, Proc. Natl. Acad. Sci. U.S.A. 2011 Feb;108(7):2825-30.
• 2009
  Cauchemez S, Donnelly CA, Reed C, Ghani AC, Fraser C, Kent CK, Finelli L, Ferguson NM, Household transmission of 2009 pandemic influenza A (H1N1) virus in the United States, N. Engl. J. Med. 2009 Dec;361(27):2619-27.
• 2009
  Fraser C, Donnelly CA, Cauchemez S, Hanage WP, Van Kerkhove MD, Hollingsworth TD, Griffin J, Baggaley RF, Jenkins HE, Lyons EJ, Jombart T, Hinsley WR, Grassly NC, Balloux F, Ghani AC, Ferguson NM, Rambaut A, Pybus OG, Lopez-Gatell H, Alpuche-Aranda CM, Chapela IB, Zavala EP, Guevara DM, Checchi F, Garcia E, Hugonnet S, Roth C, , Pandemic potential of a strain of influenza A (H1N1): early findings, Science 2009 Jun;324(5934):1557-61.
• 2008
  Cauchemez S, Valleron AJ, Boëlle PY, Flahault A, Ferguson NM, Estimating the impact of school closure on influenza transmission from Sentinel data, Nature 2008 Apr;452(7188):750-4.