• 2024
  Marchment G, Brancotte B, Schmit M, Lemoine F, Cohen-Boulakia S, BioFlow-Insight: facilitating reuse of Nextflow workflows with structure reconstruction and visualization., NAR Genom Bioinform 2024 Sep; 6(3): lqae092.
• 2022
  Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S, , A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies., Nat Commun 2022 Jul; 13(1): 3807.
• 2021
  Jamet A, Guglielmini J, Brancotte B, Coureuil M, Euphrasie D, Meyer J, Roux J, Barnier JP, Bille E, Ferroni A, Magny JF, Bôle-Feysot C, Charbit A, Nassif X, Brisse S, , High-Resolution Typing of Staphylococcus epidermidis Based on Core Genome Multilocus Sequence Typing To Investigate the Hospital Spread of Multidrug-Resistant Clones., J Clin Microbiol 2021 Feb; 59(3): .
• 2021
  Lamy-Besnier Q, Brancotte B, Ménager H, Debarbieux L, , Viral Host Range database, an online tool for recording, analyzing and disseminating virus-host interactions., Bioinformatics 2021 Feb; (): .
• 2021
  Torchet R, Druart K, Ruano LC, Moine-Franel A, Borges H, Doppelt-Azeroual O, Brancotte B, Mareuil F, Nilges M, Ménager H, Sperandio O, The iPPI-DB initiative: a community-centered database of protein-protein interaction modulators., Bioinformatics 2021 Apr; 37(1): 89-96.
• 2018
  Bryan Brancotte, Christophe Blanchet, Hervé Ménager, A reusable tree-based web-visualization to browse EDAM ontology, and contribute to it., JOSS 2018.
• 2015
  Bryan Brancotte, Agrégation de classements avec égalités: algorithmes, guides à l’utilisateur et applications aux données biologiques, Thesis.
• 2015
  Bryan Brancotte, Bo Yang, Guillaume Blin, Sarah Cohen-Boulakia, Alain Denise, Sylvie Hamel, Rank aggregation with ties: Experiments and analysis, PVLDB 2015.
• 2015
  Bryan Brancotte, Bastien Rance, Alain Denise, Sarah Cohen-Boulakia, Interrogation de bases de données biologiques publiques par reformulation de requêtes et classement des résultats avec ConQuR-Bio, JOBIM 2015.
• 2014
  Johannes Starlinger, Bryan Brancotte, Sarah Cohen-Boulakia, Ulf Leser, Similarity search for scientific workflows, PVLDB 2014.
• 2014
  International Conference on Data Integration in the Life Sciences, Conqur-bio: Consensus ranking with query reformulation for biological data, DILS 2014.
• 2011
  Brancotte B, Biton A, Bernard-Pierrot I, Radvanyi F, Reyal F, Cohen-Boulakia S, Gene List significance at-a-glance with GeneValorization, Bioinformatics 2011 Apr;27(8):1187-9.