• 2024
  Marchment G, Brancotte B, Schmit M, Lemoine F, Cohen-Boulakia S, BioFlow-Insight: facilitating reuse of Nextflow workflows with structure reconstruction and visualization., NAR Genom Bioinform 2024 Sep; 6(3): lqae092.
• 2024
  Bryan Brancotte, Elodie Chapeaublanc, Shiny-K8s, a toolkit to easily and reproducibly deploy your (R)Shiny app thanks to docker and Kubernetes (without mastering them!), JOBIM 2024, Jun 2024, Toulouse (FRANCE), France. .
• 2024
  Juliette Bonche, Bryan Brancotte, Elodie Chapeaublanc, Amanda Dieuaide, Simon Malesys, Fabien Mareuil, Rémi Planel, Marie Schmit, Raphael Tackx, Rachel Torchet, Web development, expertise of the Web INTEgRation group in the Bioinformatic and Biostatistics Hub, Journée Départementale du Département de Biologie Computationnelle de l'Institut Pasteur, Mar 2024, Annecy (France), France.
• 2022
  Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S, , A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies., Nat Commun 2022 Jul; 13(1): 3807.
• 2021
  Jamet A, Guglielmini J, Brancotte B, Coureuil M, Euphrasie D, Meyer J, Roux J, Barnier JP, Bille E, Ferroni A, Magny JF, Bôle-Feysot C, Charbit A, Nassif X, Brisse S, , High-Resolution Typing of Staphylococcus epidermidis Based on Core Genome Multilocus Sequence Typing To Investigate the Hospital Spread of Multidrug-Resistant Clones., J Clin Microbiol 2021 Feb; 59(3): .
• 2021
  Lamy-Besnier Q, Brancotte B, Ménager H, Debarbieux L, , Viral Host Range database, an online tool for recording, analyzing and disseminating virus-host interactions., Bioinformatics 2021 Feb; (): .
• 2021
  Torchet R, Druart K, Ruano LC, Moine-Franel A, Borges H, Doppelt-Azeroual O, Brancotte B, Mareuil F, Nilges M, Ménager H, Sperandio O, The iPPI-DB initiative: a community-centered database of protein-protein interaction modulators., Bioinformatics 2021 Apr; 37(1): 89-96.
• 2018
  Bryan Brancotte, Christophe Blanchet, Hervé Ménager, A reusable tree-based web-visualization to browse EDAM ontology, and contribute to it., JOSS 2018.
• 2015
  Bryan Brancotte, Agrégation de classements avec égalités: algorithmes, guides à l’utilisateur et applications aux données biologiques, Thesis.
• 2015
  Bryan Brancotte, Bo Yang, Guillaume Blin, Sarah Cohen-Boulakia, Alain Denise, Sylvie Hamel, Rank aggregation with ties: Experiments and analysis, PVLDB 2015.
• 2015
  Bryan Brancotte, Bastien Rance, Alain Denise, Sarah Cohen-Boulakia, Interrogation de bases de données biologiques publiques par reformulation de requêtes et classement des résultats avec ConQuR-Bio, JOBIM 2015.
• 2014
  Johannes Starlinger, Bryan Brancotte, Sarah Cohen-Boulakia, Ulf Leser, Similarity search for scientific workflows, PVLDB 2014.
• 2014
  International Conference on Data Integration in the Life Sciences, Conqur-bio: Consensus ranking with query reformulation for biological data, DILS 2014.
• 2011
  Brancotte B, Biton A, Bernard-Pierrot I, Radvanyi F, Reyal F, Cohen-Boulakia S, Gene List significance at-a-glance with GeneValorization, Bioinformatics 2011 Apr;27(8):1187-9.