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2024Belt and braces: Two escape ways to maintain the cassette reservoir of large chromosomal integrons., PLoS Genet 2024 Apr; 20(4): e1011231.
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2024Cassette recombination dynamics within chromosomal integrons are regulated by toxin-antitoxin systems., Science Advances , 2024, 10 (2), pp.eadj3498. ⟨10.1126/sciadv.adj3498⟩.
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2024Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites., Nat Microbiol 2024 Jan; 9(1): 228-240.
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2023Cell cycle-coordinated maintenance of the Vibrio bipartite genome., EcoSal Plus 2023 Dec; 11(1): eesp00082022.
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2023Escherichia coli survival in response to ciprofloxacin antibiotic stress correlates with increased nucleoid length and effective misfolded protein management, Butler George, Bos Julia, Austin Robert H., Amend Sarah R. and Pienta Kenneth J. 2023Escherichia coli survival in response to ciprofloxacin antibiotic stress correlates with increased nucleoid length and effective misfolded protein managementR. Soc. open sci.10230338230338.
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2023Identification of the active mechanism of aminoglycoside entry in V. cholerae through characterization of sRNA ctrR, regulating carbohydrate utilization and transport., bioRxiv 2023 Jul; (): .
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2023Chromosomal Position of Ribosomal Protein Genes Affects Long-Term Evolution of Vibrio cholerae., mBio 2023 Apr; 14(2): e0343222.
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2022Systematic transcriptome analysis allows the identification of new type I and type II Toxin/Antitoxin systems located in the superintegron of Vibrio cholerae., Res Microbiol 2023 ; 174(1-2): 103997.
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2022Nonessential tRNA and rRNA modifications impact the bacterial response to sub-MIC antibiotic stress, microLife, Volume 3, 2022, uqac019.
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2022Differential Localization and Functional Specialization of parS Centromere-Like Sites in repABC Replicons of Alphaproteobacteria., Appl Environ Microbiol 2022 04; 88(8): e0020722.
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2022Unbridled Integrons: A Matter of Host Factors., Cells 2022 Mar; 11(6): .
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2022A qnr-plasmid allows aminoglycosides to induce SOS in Escherichia coli., Elife 2022 Jan; 11(): .
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2021Interplay between Sublethal Aminoglycosides and Quorum Sensing: Consequences on Survival in V. cholerae., Cells 2021 11; 10(11): .
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2021The coordinated replication of Vibrio cholerae’s two chromosomes required the acquisition of a unique domain by the RctB initiator., Nucleic Acids Res 2021 Nov; 49(19): 11119-11133.
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2021Sleeping ribosomes: Bacterial signaling triggers RaiA mediated persistence to aminoglycosides., iScience 2021 Oct; 24(10): 103128.
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2021Deficiency in cytosine DNA methylation leads to high chaperonin expression and tolerance to aminoglycosides in Vibrio cholerae., PLoS Genet 2021 10; 17(10): e1009748.
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2020Macromolecular crowding links ribosomal protein gene dosage to growth rate in Vibrio cholerae., BMC Biol 2020 Apr; 18(1): 43.
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2019RadD Contributes to R-Loop Avoidance in Sub-MIC Tobramycin., mBio 2019 07; 10(4): .
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2019Gamblers: An Antibiotic-Induced Evolvable Cell Subpopulation Differentiated by Reactive-Oxygen-Induced General Stress Response., Mol Cell 2019 05; 74(4): 785-800.e7.
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2019Structural heterogeneity of attC integron recombination sites revealed by optical tweezers., Nucleic Acids Res 2019 Feb; 47(4): 1861-1870.
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2019Engineered toxin-intein antimicrobials can selectively target and kill antibiotic-resistant bacteria in mixed populations, Nat Biotechnol. 2019 Jul;37(7):755-760. doi: 10.1038/s41587-019-0105-3. Epub 2019 Apr 15..
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2018Emergence of Escherichia coli critically buckled motile helices under stress., Proc Natl Acad Sci U S A 2018 12; 115(51): 12979-12984.
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2018Vibrio cholerae chromosome 2 copy number is controlled by the methylation-independent binding of its monomeric initiator to the chromosome 1 crtS site., Nucleic Acids Res 2018 Nov; 46(19): 10145-10156.
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2018Vibrio cholerae chromosome 2 copy number is controlled by the methylation-independent binding of its monomeric initiator to the chromosome 1 crtS site., Nucleic Acids Res 2018 11; 46(19): 10145-10156.
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2018Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation, BMC Genomics 2018 May;19(1):373.
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2018Recoding of synonymous genes to expand evolutionary landscapes requires control of secondary structure affecting translation., Biotechnol Bioeng 2018 Jan; 115(1): 184-191.
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2018Replicate Once Per Cell Cycle: Replication Control of Secondary Chromosomes., Front Microbiol 2018 ; 9(): 1833.
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2018A bacterial antibiotic resistance accelerator and applications., Methods Cell Biol 2018 ; 147(): 41-57.
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2017Dynamic stepwise opening of integron attC DNA hairpins by SSB prevents toxicity and ensures functionality, Nucleic Acids Research (2017) 45(18):10555-10563. doi: 10.1093/nar/gkx670 .
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2017Differences in Integron Cassette Excision Dynamics Shape a Trade-Off between Evolvability and Genetic Capacitance., mBio, 2017, 8 (2), pp.e02296-16. ⟨10.1128/mBio.02296-16⟩.
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2017Bacterial population solitary waves can defeat rings of funnels, New J. Phys. 19 (2017) 035002.
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2017The Proximity of Ribosomal Protein Genes to oriC Enhances Vibrio cholerae Fitness in the Absence of Multifork Replication, MBio. 2017 Feb 28;8(1). pii: e00097-17. doi: 10.1128/mBio.00097-17..
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2016Efficiency of integron cassette insertion in correct orientation is ensured by the interplay of the three unpaired features of attC recombination sites., Nucleic Acids Res 2016 Sep; 44(16): 7792-803.
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2016Adaptation to Global Change: A Transposable Element-Epigenetics Perspective., Trends Ecol Evol 2016 Jul; 31(7): 514-526.
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2016A checkpoint control orchestrates the replication of the two chromosomes of Vibrio cholerae., Sci Adv 2016 Apr; 2(4): e1501914.
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2016Unmasking the ancestral activity of integron integrases reveals a smooth evolutionary transition during functional innovation., Nat Commun 2016 Mar; 7(): 10937.
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2016Reproducibility of Fluorescent Expression from Engineered Biological Constructs in E. coli, PLoS One. 2016 Mar 3;11(3):e0150182. doi: 10.1371/journal.pone.0150182. eCollection 2016..
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2015Repairing oxidized proteins in the bacterial envelope using respiratory chain electrons., Nature 2015 Dec; 528(7582): 409-412.
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2015A single regulatory gene is sufficient to alter Vibrio aestuarianus pathogenicity in oysters, Environ Microbiol. 2015 Nov;17(11):4189-99.
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2015External guide sequence technology: a path to development of novel antimicrobial therapeutics, Ann. N. Y. Acad. Sci. 2015 Apr;.
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2015Genomic location of the major ribosomal protein gene locus determines Vibrio cholerae global growth and infectivity., PLoS Genet 2015 Apr; 11(4): e1005156.
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2015The Integron: Adaptation On Demand., Microbiol Spectr 2015 Apr; 3(2): MDNA3-0019-2014.
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2014Management of multipartite genomes: the Vibrio cholerae model., Curr Opin Microbiol 2014 Dec; 22(): 120-6.
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2014SOS, the formidable strategy of bacteria against aggressions., FEMS Microbiol Rev 2014 Nov; 38(6): 1126-45.
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2014VIBRIO 2014 meeting report, Res. Microbiol. 2014 Dec;165(10):857-64.
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2014You cannot tell a book by looking at the cover: Cryptic complexity in bacterial evolution., Biomicrofluidics 2014 Sep; 8(5): 052004.
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2014Influence of very short patch mismatch repair on SOS inducing lesions after aminoglycoside treatment in Escherichia coli, Res. Microbiol. 2014 Jul-Aug;165(6):476-80.
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2014Culturable aerobic and facultative bacteria from the gut of the polyphagic dung beetle Thorectes lusitanicus, Insect Sci. 2015 Apr;22(2):178-90.
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2014The superintegron integrase and the cassette promoters are co-regulated in Vibrio cholerae, PLoS ONE 2014;9(3):e91194.
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2014Fuse or die: how to survive the loss of Dam in Vibrio cholerae., Mol Microbiol 2014 Feb; 91(4): 665-78.
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2014Identification of genes involved in low aminoglycoside-induced SOS response in Vibrio cholerae: a role for transcription stalling and Mfd helicase., Nucleic Acids Res 2014 Feb; 42(4): 2366-79.
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2014The integron integrase efficiently prevents the melting effect of Escherichia coli single-stranded DNA-binding protein on folded attC sites., J Bacteriol 2014 Feb; 196(4): 762-71.
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2013First identification of Salmonella Urbana and Salmonella Ouakam in humans in Africa, J Infect Dev Ctries 2013;7(10):691-5.
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2013RpoS plays a central role in the SOS induction by sub-lethal aminoglycoside concentrations in Vibrio cholerae., PLoS Genet 2013 ; 9(4): e1003421.
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2013β-Lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity, Nat Commun 2013;4:1610.
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2013The sRNA RyhB regulates the synthesis of the Escherichia coli methionine sulfoxide reductase MsrB but not MsrA., PLoS One 2013 ; 8(5): e63647.
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2012BapE DNA endonuclease induces an apoptotic-like response to DNA damage in Caulobacter., Proc Natl Acad Sci U S A 2012 Oct; 109(44): 18096-101.
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2012Inhibition of cell division induced by external guide sequences (EGS Technology) targeting ftsZ, PLoS ONE 2012;7(10):e47690.
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2012Antibiotics as physiological stress inducers and bacterial response to the challenge, Curr. Opin. Microbiol. 2012 Oct;15(5):553-4.
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2012Initial characterization of the Pf-Int recombinase from the malaria parasite Plasmodium falciparum, PLoS ONE 2012;7(10):e46507.
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2012Internalization of Locked Nucleic Acids/DNA Hybrid Oligomers into Escherichia coli, Biores Open Access 2012 Oct;1(5):260-3.
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2012Replicative resolution of integron cassette insertion., Nucleic Acids Res 2012 Sep; 40(17): 8361-70.
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2012Ecology of antimicrobial resistance: humans, animals, food and environment, Int. Microbiol. 2012 Sep;15(3):101-9.
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2012Identification of DNA binding motifs of the Mycobacterium tuberculosis PhoP/PhoR two-component signal transduction system, PLoS ONE 2012;7(8):e42876.
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2012Evidence for induction of integron-based antibiotic resistance by the SOS response in a clinical setting, PLoS Pathog. 2012;8(6):e1002778.
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2012RPA facilitates telomerase activity at chromosome ends in budding and fission yeasts., EMBO J 2012 Apr; 31(8): 2034-46.
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2012Connecting environment and genome plasticity in the characterization of transformation-induced SOS regulation and carbon catabolite control of the Vibrio cholerae integron integrase., J Bacteriol 2012 Apr; 194(7): 1659-67.
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2012Fitness cost and interference of Arm/Rmt aminoglycoside resistance with the RsmF housekeeping methyltransferases, Antimicrob. Agents Chemother. 2012 May;56(5):2335-41.
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2012Small plasmids harboring qnrB19: a model for plasmid evolution mediated by site-specific recombination at oriT and Xer sites, Antimicrob. Agents Chemother. 2012 Apr;56(4):1821-7.
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2012A natural system of chromosome transfer in Yersinia pseudotuberculosis., PLoS Genet 2012 ; 8(3): e1002529.
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2012Genome engineering in Vibrio cholerae: a feasible approach to address biological issues., PLoS Genet 2012 Jan; 8(1): e1002472.
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2011Fluoroquinolone efflux in Streptococcus suis is mediated by SatAB and not by SmrA, Antimicrob. Agents Chemother. 2011 Dec;55(12):5850-60.
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2011ArmA methyltransferase in a monophasic Salmonella enterica isolate from food, Antimicrob. Agents Chemother. 2011 Nov;55(11):5262-6.
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2011High-level gene cassette transcription prevents integrase expression in class 1 integrons, J. Bacteriol. 2011 Oct;193(20):5675-82.
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2011Vibrio cholerae triggers SOS and mutagenesis in response to a wide range of antibiotics: a route towards multiresistance., Antimicrob Agents Chemother 2011 May; 55(5): 2438-41.
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2011Prevalence of SOS-mediated control of integron integrase expression as an adaptive trait of chromosomal and mobile integrons, Mob DNA 2011;2(1):6.
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2011Formation of a stable RuvA protein double tetramer is required for efficient branch migration in vitro and for replication fork reversal in vivo, J. Biol. Chem. 2011 Jun;286(25):22372-83.
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2010Folded DNA in action: hairpin formation and biological functions in prokaryotes., Microbiol Mol Biol Rev 2010 Dec; 74(4): 570-88.
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2010Contribution of ROB-1 and PBP3 mutations to the resistance phenotype of a β-lactamase-positive amoxicillin/clavulanic acid-resistant Haemophilus influenzae carrying plasmid pB1000 in Italy, J. Antimicrob. Chemother. 2011 Jan;66(1):96-9.
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2010Conjugative DNA transfer induces the bacterial SOS response and promotes antibiotic resistance development through integron activation., PLoS Genet 2010 Oct; 6(10): e1001165.
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2010Silent mischief: bacteriophage Mu insertions contaminate products of Escherichia coli random mutagenesis performed using suicidal transposon delivery plasmids mobilized by broad-host-range RP4 conjugative machinery, J. Bacteriol. 2010 Dec;192(24):6418-27.
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2010Virulence of an emerging pathogenic lineage of Vibrio nigripulchritudo is dependent on two plasmids, Environ. Microbiol. 2011 Feb;13(2):296-306.
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2010Vibrio2009: the third international conference on the biology of Vibrios, Mol. Microbiol. 2010 Sep;77(5):1065-71.
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2010Cellular pathways controlling integron cassette site folding., EMBO J 2010 Aug; 29(15): 2623-34.
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2010Vibrio aestuarianus zinc metalloprotease causes lethality in the Pacific oyster Crassostrea gigas and impairs the host cellular immune defenses, Fish Shellfish Immunol. 2010 Nov;29(5):753-8.
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2010The synthetic integron: an in vivo genetic shuffling device, Nucleic Acids Res. 2010 Aug;38(15):e153.
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2010RNA polymerase mutations that facilitate replication progression in the rep uvrD recF mutant lacking two accessory replicative helicases, Mol. Microbiol. 2010 Jul;77(2):324-36.
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2010Naturally competent Acinetobacter baumannii clinical isolate as a convenient model for genetic studies, J. Clin. Microbiol. 2010 Apr;48(4):1488-90.
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2010An end-joining repair mechanism in Escherichia coli., Proc Natl Acad Sci U S A 2010 Feb; 107(5): 2141-6.
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2010Molecular keys of the tropism of integration of the cholera toxin phage., Proc Natl Acad Sci U S A 2010 Mar; 107(9): 4377-82.
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2010Haemophilus influenzae clinical isolates with plasmid pB1000 bearing blaROB-1: fitness cost and interspecies dissemination, Antimicrob. Agents Chemother. 2010 Apr;54(4):1506-11.
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2010The major outer membrane protein OmpU of Vibrio splendidus contributes to host antimicrobial peptide resistance and is required for virulence in the oyster Crassostrea gigas, Environ. Microbiol. 2010 Apr;12(4):951-63.
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2010Inverse correlation between promoter strength and excision activity in class 1 integrons, PLoS Genet. 2010 Jan;6(1):e1000793.
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2010Integrons, Annu. Rev. Genet. 2010;44:141-66.
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2009The relaxed requirements of the integron cleavage site allow predictable changes in integron target specificity, Nucleic Acids Res. 2010 Jan;38(2):559-69.
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2009Comparative genomics of protoploid Saccharomycetaceae., Genome Res 2009 Oct; 19(10): 1696-709.
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2009Novel genetic environment of qnrB2 associated with TEM-1 and SHV-12 on pB1004, an IncHI2 plasmid, in Salmonella Bredeney BB1047 from Spain, J. Antimicrob. Chemother. 2009 Dec;64(6):1334-6.
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2009Structural features of single-stranded integron cassette attC sites and their role in strand selection., PLoS Genet 2009 Sep; 5(9): e1000632.
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2009Inhibition of aac(6′)-Ib-mediated amikacin resistance by nuclease-resistant external guide sequences in bacteria, Proc. Natl. Acad. Sci. U.S.A. 2009 Aug;106(32):13230-5.
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2009Multiresistance in Pasteurella multocida is mediated by coexistence of small plasmids, Antimicrob. Agents Chemother. 2009 Aug;53(8):3399-404.
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2009Translation regulation of integrons gene cassette expression by the attC sites, Mol. Microbiol. 2009 Jun;72(6):1475-86.
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2009The SOS response controls integron recombination, Science 2009 May;324(5930):1034.
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2009Genome sequence of Vibrio splendidus: an abundant planctonic marine species with a large genotypic diversity, Environ. Microbiol. 2009 Aug;11(8):1959-70.
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2008Synonymous genes explore different evolutionary landscapes, PLoS Genet. 2008 Nov;4(11):e1000256.
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2008FtsK-dependent dimer resolution on multiple chromosomes in the pathogen Vibrio cholerae., PLoS Genet 2008 Sep; 4(9): e1000201.
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2008Different strategies to persist: the pogo-like Lemi1 transposon produces miniature inverted-repeat transposable elements or typical defective elements in different plant genomes., Genetics 2008 Sep; 180(1): 83-92.
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2008Correlation between detection of a plasmid and high-level virulence of Vibrio nigripulchritudo, a pathogen of the shrimp Litopenaeus stylirostris, Appl. Environ. Microbiol. 2008 May;74(10):3038-47.
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2008Klebsiella pneumoniae multiresistance plasmid pMET1: similarity with the Yersinia pestis plasmid pCRY and integrative conjugative elements, PLoS ONE 2008;3(3):e1800.
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2008Delineation of the recombination sites necessary for integration of pathogenicity islands II and III into the Escherichia coli 536 chromosome, Mol. Microbiol. 2008 Apr;68(1):139-51.
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2007Complex class 1 integrons with diverse variable regions, including aac(6′)-Ib-cr, and a novel allele, qnrB10, associated with ISCR1 in clinical enterobacterial isolates from Argentina, Antimicrob. Agents Chemother. 2007 Dec;51(12):4466-70.
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2007Identification of key structural determinants of the IntI1 integron integrase that influence attC x attI1 recombination efficiency, Nucleic Acids Res. 2007;35(19):6475-89.
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2007Vibrio splendidus as the source of plasmid-mediated QnrS-like quinolone resistance determinants, Antimicrob. Agents Chemother. 2007 Jul;51(7):2650-1.
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2005Comparative study of class 1 integron and Vibrio cholerae superintegron integrase activities, J. Bacteriol. 2005 Mar;187(5):1740-50.
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2003Erythromycin esterase gene ere(A) is located in a functional gene cassette in an unusual class 2 integron, Antimicrob. Agents Chemother. 2003 Oct;47(10):3326-31.
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