• 2021
  Dupré M, Duchateau M, Sternke-Hoffmann R, Boquoi A, Malosse C, Fenk R, Haas R, Buell AK, Rey M, Chamot-Rooke J, , De Novo Sequencing of Antibody Light Chain Proteoforms from Patients with Multiple Myeloma., Anal Chem 2021 08; 93(30): 10627-10634.
• 2021
  Rey M, Dhenin J, Kong Y, Nouchikian L, Filella I, Duchateau M, Dupré M, Pellarin R, Duménil G, Chamot-Rooke J, , Advanced In Vivo Cross-Linking Mass Spectrometry Platform to Characterize Proteome-Wide Protein Interactions., Anal Chem 2021 Feb; (): .
• 2020
  Dumas G, Goubran-Botros H, Matondo M, Pagan C, Boulègue C, Chaze T, Chamot-Rooke J, Maronde E, Bourgeron T, , Mass-spectrometry analysis of the human pineal proteome during night and day and in autism., J Pineal Res 2020 Dec; (): e12713.
• 2020
  Lima DB, Dupré M, Duchateau M, Gianetto QG, Rey M, Matondo M, Chamot-Rooke J, , ProteoCombiner: integrating bottom-up with top-down proteomics data for improved proteoform assessment., Bioinformatics 2020 Nov; (): .
• 2020
  Leitner A, Bonvin AMJJ, Borchers CH, Chalkley RJ, Chamot-Rooke J, Combe CW, Cox J, Dong MQ, Fischer L, Götze M, Gozzo FC, Heck AJR, Hoopmann MR, Huang L, Ishihama Y, Jones AR, Kalisman N, Kohlbacher O, Mechtler K, Moritz RL, Netz E, Novak P, Petrotchenko E, Sali A, Scheltema RA, Schmidt C, Schriemer D, Sinz A, Sobott F, Stengel F, Thalassinos K, Urlaub H, Viner R, Vizcaíno JA, Wilkins MR, Rappsilber J, , Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry., Structure 2020 Nov; 28(11): 1259-1268.
• 2020
  Dupré M, Duchateau M, Malosse C, Borges-Lima D, Calvaresi V, Podglajen I, Clermont D, Rey M, Chamot-Rooke J, , Optimization of a Top-Down Proteomics Platform for Closely Related Pathogenic Bacterial Discrimination., J Proteome Res 2020 Oct; (): .
• 2020
  Srzentić K, Fornelli L, Tsybin YO, Loo JA, Seckler H, Agar JN, Anderson LC, Bai DL, Beck A, Brodbelt JS, van der Burgt YEM, Chamot-Rooke J, Chatterjee S, Chen Y, Clarke DJ, Danis PO, Diedrich JK, D'Ippolito RA, Dupré M, Gasilova N, Ge Y, Goo YA, Goodlett DR, Greer S, Haselmann KF, He L, Hendrickson CL, Hinkle JD, Holt MV, Hughes S, Hunt DF, Kelleher NL, Kozhinov AN, Lin Z, Malosse C, Marshall AG, Menin L, Millikin RJ, Nagornov KO, Nicolardi S, Paša-Tolić L, Pengelley S, Quebbemann NR, Resemann A, Sandoval W, Sarin R, Schmitt ND, Shabanowitz J, Shaw JB, Shortreed MR, Smith LM, Sobott F, Suckau D, Toby T, Weisbrod CR, Wildburger NC, Yates JR, Yoon SH, Young NL, Zhou M, , Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry., J Am Soc Mass Spectrom 2020 Sep; 31(9): 1783-1802.
• 2020
  Medits I, Vaney MC, Rouvinski A, Rey M, Chamot-Rooke J, Rey FA, Heinz FX, Stiasny K, , Extensive flavivirus E trimer breathing accompanies stem zippering of the post-fusion hairpin., EMBO Rep. 2020 Jun; (): e50069.
• 2020
  Flaugnatti N, Rapisarda C, Rey M, Beauvois SG, Nguyen VA, Canaan S, Durand E, Chamot-Rooke J, Cascales E, Fronzes R, Journet L, , Structural basis for loading and inhibition of a bacterial T6SS phospholipase effector by the VgrG spike., EMBO J. 2020 Jun; 39(11): e104129.
• 2020
  Williams AH, Wheeler R, Deghmane AE, Santecchia I, Schaub RE, Hicham S, Moya Nilges M, Malosse C, Chamot-Rooke J, Haouz A, Dillard JP, Robins WP, Taha MK, Gomperts Boneca I, , Defective lytic transglycosylase disrupts cell morphogenesis by hindering cell wall de-O-acetylation in Neisseria meningitidis., Elife 2020 Feb; 9(): .
• 2019
  Smith LM, Thomas PM, Shortreed MR, Schaffer LV, Fellers RT, LeDuc RD, Tucholski T, Ge Y, Agar JN, Anderson LC, Chamot-Rooke J, Gault J, Loo JA, Paša-Tolić L, Robinson CV, Schlüter H, Tsybin YO, Vilaseca M, Vizcaíno JA, Danis PO, Kelleher NL, A five-level classification system for proteoform identifications, Nat. Methods 2019 Oct;16(10):939-940.
• 2019
  Donnelly DP, Rawlins CM, DeHart CJ, Fornelli L, Schachner LF, Lin Z, Lippens JL, Aluri KC, Sarin R, Chen B, Lantz C, Jung W, Johnson KR, Koller A, Wolff JJ, Campuzano IDG, Auclair JR, Ivanov AR, Whitelegge JP, Paša-Tolić L, Chamot-Rooke J, Danis PO, Smith LM, Tsybin YO, Loo JA, Ge Y, Kelleher NL, Agar JN, Best practices and benchmarks for intact protein analysis for top-down mass spectrometry, Nat. Methods 2019 07;16(7):587-594.
• 2019
  Lima DB, Silva ARF, Dupré M, Santos MDM, Clasen MA, Kurt LU, Aquino PF, Barbosa VC, Carvalho PC, Chamot-Rooke J, , Top-Down Garbage Collector: a tool for selecting high-quality top-down proteomics mass spectra., Bioinformatics 2019 09; 35(18): 3489-3490.
• 2018
  Cirri E, Brier S, Assal R, Canul-Tec JC, Chamot-Rooke J, Reyes N, Consensus designs and thermal stability determinants of a human glutamate transporter, Elife 2018 10;7.
• 2018
  Cherrak Y, Rapisarda C, Pellarin R, Bouvier G, Bardiaux B, Allain F, Malosse C, Rey M, Chamot-Rooke J, Cascales E, Fronzes R, Durand E, Biogenesis and structure of a type VI secretion baseplate, Nat Microbiol 2018 Oct;.
• 2018
  Schiettekatte O, Vincent AT, Malosse C, Lechat P, Chamot-Rooke J, Veyrier FJ, Picardeau M, Bourhy P, , Characterization of LE3 and LE4, the only lytic phages known to infect the spirochete Leptospira., Sci Rep 2018 08; 8(1): 11781.
• 2018
  LeDuc RD, Schwämmle V, Shortreed MR, Cesnik AJ, Solntsev SK, Shaw JB, Martin MJ, Vizcaino JA, Alpi E, Danis P, Kelleher NL, Smith LM, Ge Y, Agar JN, Chamot-Rooke J, Loo JA, Pasa-Tolic L, Tsybin YO, ProForma: A Standard Proteoform Notation, J. Proteome Res. 2018 03;17(3):1321-1325.
• 2018
  Li J, Mouyna I, Henry C, Moyrand F, Malosse C, Chamot-Rooke J, Janbon G, Latgé JP, Fontaine T, Glycosylphosphatidylinositol Anchors from Galactomannan and GPI-Anchored Protein Are Synthesized by Distinct Pathways in Aspergillus fumigatus, J Fungi (Basel) 2018 Feb;4(1).
• 2018
  Lima DB, Melchior JT, Morris J, Barbosa VC, Chamot-Rooke J, Fioramonte M, Souza TACB, Fischer JSG, Gozzo FC, Carvalho PC, Davidson WS, Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins, Nat Protoc 2018 Mar;13(3):431-458.
• 2018
  O'Brien DP, Perez ACS, Karst J, Cannella SE, Enguéné VYN, Hessel A, Raoux-Barbot D, Voegele A, Subrini O, Davi M, Guijarro JI, Raynal B, Baron B, England P, Hernandez B, Ghomi M, Hourdel V, Malosse C, Chamot-Rooke J, Vachette P, Durand D, Brier S, Ladant D, Chenal A, Calcium-dependent disorder-to-order transitions are central to the secretion and folding of the CyaA toxin of Bordetella pertussis, the causative agent of whooping cough, Toxicon 2018 Jul;149:37-44.
• 2017
  Guilvout I, Brier S, Chami M, Hourdel V, Francetic O, Pugsley AP, Chamot-Rooke J, Huysmans GH., Prepore Stability Controls Productive Folding of the BAM-independent Multimeric Outer Membrane Secretin PulD., J Biol Chem. 2017 Jan 6;292(1):328-338..
• 2017
  Silva AR, Lima DB, Peña A, Duran R, Batthyany C, Aquino PF, Leal JC, Rodriguez JE, Domont GB, Santos MD, Chamot-Rooke J, Barbosa VC, Carvalho PC, DiagnoProt: a tool for discovery of new molecules by mass spectrometry, Bioinformatics 2017 Feb;.
• 2017
  Cannella SE, Ntsogo Enguéné VY, Davi M, Malosse C, Sotomayor Pérez AC, Chamot-Rooke J, Vachette P, Durand D, Ladant D, Chenal A, Stability, structural and functional properties of a monomeric, calcium-loaded adenylate cyclase toxin, CyaA, from Bordetella pertussis, Sci Rep 2017 Feb;7:42065.
• 2016
  Guilvout I, Brier S, Chami M, Hourdel V, Francetic O, Pugsley AP, Chamot-Rooke J, Huysmans GH, Prepore Stability Controls Productive Folding of the BAM-independent Multimeric Outer Membrane Secretin PulD, J. Biol. Chem. 2017 Jan;292(1):328-338.
• 2016
  Vorontsov EA, Rensen E, Prangishvili D, Krupovic M*, Chamot-Rooke J*, Abundant Lysine Methylation and N-Terminal Acetylation in Sulfolobus islandicus Revealed by Bottom-Up and Top-Down Proteomics, Mol. Cell Proteomics 2016 Nov;15(11):3388-3404.
• 2016
  Hourdel V, Volant S, O'Brien DP, Chenal A, Chamot-Rooke J, Dillies MA, Brier S, MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets, Bioinformatics 2016 Nov;32(22):3413-3419.
• 2016
  Nivaskumar M, Santos-Moreno J, Malosse C, Nadeau N, Chamot-Rooke J, Tran Van Nhieu G, Francetic O, Pseudopilin residue E5 is essential for recruitment by the type 2 secretion system assembly platform, Mol. Microbiol. 2016 09;101(6):924-41.
• 2016
  Nativel P, Rahantamalala A, Ramiandrisoa S, Rasoamampianinaa V, Duchateau M, Chamot-Rooke J, Guebey R, Rasamoelina-Andriamanivo H, Jambou R, Bio-guided identification of proteins for the diagnosis of cysticercosis in swine, Vet. Parasitol. 2016 Apr;220:23-7.
• 2015
  Bernier MC, Chamot-Rooke J, Wysocki VH, R vs. S fluoroproline ring substitution: trans/cis effects on the formation of b2 ions in gas-phase peptide fragmentation, Phys Chem Chem Phys 2016 Jan;18(3):2202-9.
• 2015
  D. Vinella, F. Fischer, E. Vorontsov, J. Gallaud, C. Malosse, V. Michel, C. Cavazza, M. Robbe-saule, P. Richaud, J. Chamot-rooke, C. Brochier-armanet, H. De Reuse, Evolution of Helicobacter: Acquisition by Gastric Species of Two Histidine-Rich Proteins Essential for Colonization, PLoS Pathog 11(12): e1005312. doi:10.1371/journal. ppat.1005312.
• 2015
  Clermont D, Gomard M, Hamon S, Bonne I, Fernandez JC, Wheeler R, Malosse C, Chamot-Rooke J, Gribaldo S, Boneca IG, Bizet C, , Paenibacillus faecis sp. nov., isolated from human faeces., Int J Syst Evol Microbiol 2015 Dec; 65(12): 4621-4626.
• 2015
  Gueguen C, Bouley J, Moussu H, Luce S, Duchateau M, Chamot-Rooke J, Pallardy M, Lombardi V, Nony E, Baron-Bodo V, Mascarell L, Moingeon P, , Changes in markers associated with dendritic cells driving the differentiation of either TH2 cells or regulatory T cells correlate with clinical benefit during allergen immunotherapy., J Allergy Clin Immunol 2016 Feb; 137(2): 545-58.
• 2015
  O'Brien DP, Hernandez B, Durand D, Hourdel V, Sotomayor-Pérez AC, Vachette P, Ghomi M, Chamot-Rooke J, Ladant D, Brier S, Chenal A, Structural models of intrinsically disordered and calcium-bound folded states of a protein adapted for secretion, Sci Rep 2015 Sep;5:14223.
• 2015
  Gault J, Ferber M, Machata S, Imhaus AF, Malosse C, Charles-Orszag A, Millien C, Bouvier G, Bardiaux B, Péhau-Arnaudet G, Klinge K, Podglajen I, Ploy MC, Seifert HS, Nilges M, Chamot-Rooke J, Duménil G, Neisseria meningitidis Type IV Pili Composed of Sequence Invariable Pilins Are Masked by Multisite Glycosylation, PLoS Pathog. 2015 Sep;11(9):e1005162.
• 2015
  Laurenceau R, Krasteva PV, Diallo A, Ouarti S, Duchateau M, Malosse C, Chamot-Rooke J, Fronzes R, Conserved Streptococcus pneumoniae spirosomes suggest a single type of transformation pilus in competence, PLoS Pathog. 2015 Apr;11(4):e1004835.
• 2015
  Nury C, Redeker V, Dautrey S, Romieu A, van der Rest G, Renard PY, Melki R, Chamot-Rooke J, A novel bio-orthogonal cross-linker for improved protein/protein interaction analysis, Anal. Chem. 2015 Feb;87(3):1853-60.
• 2014
  Meola A, Deville C, Jeffers SA, Guardado-Calvo P, Vasiliauskaite I, Sizun C, Girard-Blanc C, Malosse C, van Heijenoort C, Chamot-Rooke J, Krey T, Guittet E, Pêtres S, Rey FA, Bontems F, Robust and low cost uniform (15)N-labeling of proteins expressed in Drosophila S2 cells and Spodoptera frugiperda Sf9 cells for NMR applications, J. Struct. Biol. 2014 Oct;188(1):71-8.
• 2014
  Magalie Duchateau, Thomas J.D. Jørgensen, Ophélie Robine, Edith Nicol, Christian Malosse, Julia Chamot-Rooke, Guillaume van der Rest, Ion source parameters and hydrogen scrambling in the ECD of selectively deuterated peptides, IJMS, 2014, 367, 21:27.
• 2014
  Chaze T, Guillot A, Valot B, Langella O, Chamot-Rooke J, Di Guilmi AM, Trieu-Cuot P, Dramsi S, Mistou MY, O-Glycosylation of the N-terminal region of the serine-rich adhesin Srr1 of Streptococcus agalactiae explored by mass spectrometry, Mol. Cell Proteomics 2014 Sep;13(9):2168-82.
• 2014
  Morrison LJ, Chamot-Rooke J, Wysocki VH, IR action spectroscopy shows competitive oxazolone and diketopiperazine formation in peptides depends on peptide length and identity of terminal residue in the departing fragment, Analyst 2014 May;139(9):2137-43.
• 2014
  Subota I, Julkowska D, Vincensini L, Reeg N, Buisson J, Blisnick T, Huet D, Perrot S, Santi-Rocca J, Duchateau M, Hourdel V, Rousselle JC, Cayet N, Namane A, Chamot-Rooke J, Bastin P, Proteomic analysis of intact flagella of procyclic Trypanosoma brucei cells identifies novel flagellar proteins with unique sub-localization and dynamics, Mol. Cell Proteomics 2014 Jul;13(7):1769-86.
• 2014
  Gault J, Malosse C, Machata S, Millien C, Podglajen I, Ploy MC, Costello CE, Duménil G, Chamot-Rooke J, Complete posttranslational modification mapping of pathogenic Neisseria meningitidis pilins requires top-down mass spectrometry, Proteomics 2014 May;14(10):1141-51.
• 2013
  Gault J, Malosse C, Duménil G, Chamot-Rooke J, A combined mass spectrometry strategy for complete posttranslational modification mapping of Neisseria meningitidis major pilin, J Mass Spectrom 2013 Nov;48(11):1199-206.
• 2013
  Laurenceau R, Péhau-Arnaudet G, Baconnais S, Gault J, Malosse C, Dujeancourt A, Campo N, Chamot-Rooke J, Le Cam E, Claverys JP, Fronzes R, A type IV pilus mediates DNA binding during natural transformation in Streptococcus pneumoniae, PLoS Pathog. 2013;9(6):e1003473.
• 2013
  Quinton L, Servent D, Girard E, Molgó J, Le Caer JP, Malosse C, Haidar el A, Lecoq A, Gilles N, Chamot-Rooke J, Identification and functional characterization of a novel α-conotoxin (EIIA) from Conus ermineus, Anal Bioanal Chem 2013 Jun;405(15):5341-51.
• 2013
  Smith LM, Kelleher NL, , Proteoform: a single term describing protein complexity, Nat. Methods 2013 Mar;10(3):186-7.
• 2013
  Gucinski AC, Chamot-Rooke J, Steinmetz V, Somogyi Á, Wysocki VH, Influence of N-terminal residue composition on the structure of proline-containing b2+ ions, J Phys Chem A 2013 Feb;117(6):1291-8.
• 2012
  Gucinski AC, Chamot-Rooke J, Nicol E, Somogyi Á, Wysocki VH, Structural influences on preferential oxazolone versus diketopiperazine b(2+) ion formation for histidine analogue-containing peptides, J Phys Chem A 2012 May;116(17):4296-304.
• 2012
  Moss CL, Chamot-Rooke J, Nicol E, Brown J, Campuzano I, Richardson K, Williams JP, Bush MF, Bythell B, Paizs B, Turecek F, Assigning structures to gas-phase peptide cations and cation-radicals. An infrared multiphoton dissociation, ion mobility, electron transfer, and computational study of a histidine peptide ion, J Phys Chem B 2012 Mar;116(10):3445-56.
• 2011
  van der Rest G, Hui R, Frison G, Chamot-Rooke J, Dissociation channel dependence on peptide size observed in electron capture dissociation of tryptic peptides, J. Am. Soc. Mass Spectrom. 2011 Sep;22(9):1631-44.
• 2011
  Chamot-Rooke J, Mikaty G, Malosse C, Soyer M, Dumont A, Gault J, Imhaus AF, Martin P, Trellet M, Clary G, Chafey P, Camoin L, Nilges M, Nassif X, Duménil G, Posttranslational modification of pili upon cell contact triggers N. meningitidis dissemination, Science 2011 Feb;331(6018):778-82.
• 2010
  Rouget C, Quinton L, Maïga A, Gales C, Masuyer G, Malosse C, Chamot-Rooke J, Thai R, Mourier G, De Pauw E, Gilles N, Servent D, Identification of a novel snake peptide toxin displaying high affinity and antagonist behaviour for the α2-adrenoceptors, Br. J. Pharmacol. 2010 Nov;161(6):1361-74.
• 2010
  Turecek F, Chung TW, Moss CL, Wyer JA, Ehlerding A, Holm AI, Zettergren H, Nielsen SB, Hvelplund P, Chamot-Rooke J, Bythell B, Paizs B, The histidine effect. Electron transfer and capture cause different dissociations and rearrangements of histidine peptide cation-radicals, J. Am. Chem. Soc. 2010 Aug;132(31):10728-40.
• 2010
  Brun E, Blouquit Y, Duchambon P, Malosse C, Chamot-Rooke J, Sicard-Roselli C, Oxidative stress induces mainly human centrin 2 polymerisation, Int. J. Radiat. Biol. 2010 Aug;86(8):657-68.
• 2010
  Gucinski AC, Somogyi A, Chamot-Rooke J, Wysocki VH, Separation and identification of structural isomers by quadrupole collision-induced dissociation-hydrogen/deuterium exchange-infrared multiphoton dissociation (QCID-HDX-IRMPD), J. Am. Soc. Mass Spectrom. 2010 Aug;21(8):1329-38.
• 2009
  Perkins BR, Chamot-Rooke J, Yoon SH, Gucinski AC, Somogyi A, Wysocki VH, Evidence of diketopiperazine and oxazolone structures for HA b2+ ion, J. Am. Chem. Soc. 2009 Dec;131(48):17528-9.
• 2008
  Yoon SH, Chamot-Rooke J, Perkins BR, Hilderbrand AE, Poutsma JC, Wysocki VH, IRMPD spectroscopy shows that AGG forms an oxazolone b2+ ion, J. Am. Chem. Soc. 2008 Dec;130(52):17644-5.
• 2008
  Frison G, van der Rest G, Turecek F, Besson T, Lemaire J, Maître P, Chamot-Rooke J, Structure of electron-capture dissociation fragments from charge-tagged peptides probed by tunable infrared multiple photon dissociation, J. Am. Chem. Soc. 2008 Nov;130(45):14916-7.
• 2007
  André M, Morelle W, Planchon S, Milhiet PE, Rubinstein E, Mollicone R, Chamot-Rooke J, Le Naour F, Glycosylation status of the membrane protein CD9P-1, Proteomics 2007 Nov;7(21):3880-95.
• 2007
  Chamot-Rooke J, Malosse C, Frison G, Turecek F, Electron capture in charge-tagged peptides. Evidence for the role of excited electronic states, J. Am. Soc. Mass Spectrom. 2007 Dec;18(12):2146-61.
• 2007
  Chamot-Rooke J, Rousseau B, Lanternier F, Mikaty G, Mairey E, Malosse C, Bouchoux G, Pelicic V, Camoin L, Nassif X, Duménil G, Alternative Neisseria spp. type IV pilin glycosylation with a glyceramido acetamido trideoxyhexose residue, Proc. Natl. Acad. Sci. U.S.A. 2007 Sep;104(37):14783-8.
• 2007
  Chamot-Rooke J, van der Rest G, Dalleu A, Bay S, Lemoine J, The combination of electron capture dissociation and fixed charge derivatization increases sequence coverage for O-glycosylated and O-phosphorylated peptides, J. Am. Soc. Mass Spectrom. 2007 Aug;18(8):1405-13.
• 2006
  Quinton L, Le Caër JP, Vinh J, Gilles N, Chamot-Rooke J, Fourier transform mass spectrometry: a powerful tool for toxin analysis, Toxicon 2006 May;47(6):715-26.
• 2006
  André M, Le Caer JP, Greco C, Planchon S, El Nemer W, Boucheix C, Rubinstein E, Chamot-Rooke J, Le Naour F, Proteomic analysis of the tetraspanin web using LC-ESI-MS/MS and MALDI-FTICR-MS, Proteomics 2006 Mar;6(5):1437-49.
• 2005
  Quinton L, Le Caer JP, Phan G, Ligny-Lemaire C, Bourdais-Jomaron J, Ducancel F, Chamot-Rooke J, Characterization of toxins within crude venoms by combined use of Fourier transform mass spectrometry and cloning, Anal. Chem. 2005 Oct;77(20):6630-9.
• 1975
  Korelitz BI, Sommers SC, Responses to drug therapy in ulcerative colitis. Evaluation by rectal biopsy and histopathological changes, Am. J. Gastroenterol. 1975 Nov;64(5):365-70.